| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yeiH [C]
Identifier: 103487152
GI number: 103487152
Start: 1754744
End: 1755844
Strand: Direct
Name: yeiH [C]
Synonym: Sala_1667
Alternate gene names: 103487152
Gene position: 1754744-1755844 (Clockwise)
Preceding gene: 103487149
Following gene: 103487162
Centisome position: 52.46
GC content: 66.58
Gene sequence:
>1101_bases GTGAAAGACTGCGAAGCGATGACCCGCGGCCCCGCCCCTTCCGAACCGTATCGCGGGGATCTTTTCGGGGAAATCCACCT CGCCGATATGACCGATGCTGCGCCAACGCCCGGGATCGCCCGATATTTCCCCGGCCTGGCGATCTGCGCCGCGGCGGCTG GCGCGGCCGGATGGCTCTCGGACCATTATGGTGTGCCCGTCATCCTGCTCGGCCTGCTCATCGGGCTCGCGCTCAATTTC GTCGCGCGCGATGCGCGCACCCATCGCGGTCTCGACTTCGCCTCGCACACCTTCCTGCGGATCGGAATTGTGCTTCTCGG CTTTCAGGTCAGCATCGCACAGATCGTCGCGCTGGGAGCGCTCCCGTTTGCCGCACTGATCCTCATCATGGCGGTGGCCT TTGCCGCCGGACTTGCCGGCGCTCGCCTGTCGCGCCAGTCACCATATGCGGGCCTCCTTGCCGGTGGCGCGACGGCGATT TGCGGCGCCAGCGCCGCGCTCGCGCTCTATGGCATCGTCGGCAAAGAGCGGCTCAGCCAGGCACAATTTGCGCTGACGCT GGTGGGTGTGTCGATGGCCAGTGCGCTGGCGATGTCGCTTTATCCCGCCATTGCGGCCGAACTGGAACTCAGCGACGCGC AGGCCGGTTACCTGATCGGCGCCTCGATACACGATGTCGGCCAGGCAATCGGCGGCGCTTATGCTGTTTCGGACGCAGCA GGCATCGATGCCACGATCGTCAAGCTGGCGCGCGTTACGCTGCTTGCCCCCGTCGTGCTGCTCGTTTCGCTGGTGATCGG CCCGGCGCGCGCCGGGCCGTCCCGACCCAGCTGGCGGCGACTGGGCATGCCGTGGTTCATCACGCTCTTTCTTGCCGTTG TCGCGGTCAACAGCCTGATCGACCTTCCTGCCGTCGCGGCAACCAAGGCGCTTGCCGCATCCAAGGCGCTGCTGCTGCTC GCCGTGACGGCCACCGCCATGCGTTCACGCACCGACCTGCTCCTCGAGCTCGGCTGGCGGGCGGCCGCTCCCGTCATGGC GGCTTCGCTGGCAAGCTTTGCGGCCGCACTTTTCTTCGTAATGATCGGGGTGGGTGACTGA
Upstream 100 bases:
>100_bases CTCTCCCTCGCCCTTTGAGCTGTTTCGACTTGCAACCTAGCGCCCGCTGCCGATAAGGGAAGAAAAATATGACACCGTAG GACATACCGTAGGACATAAG
Downstream 100 bases:
>100_bases GGCGTCACAACCCGGCGCGGTCAGAGCGCGTCGACGGATCGGATCGGCCCCCTGGCGCTGTCGAACTGGGCCGCGACGTG GCGCGCATAGGGAAGACCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MKDCEAMTRGPAPSEPYRGDLFGEIHLADMTDAAPTPGIARYFPGLAICAAAAGAAGWLSDHYGVPVILLGLLIGLALNF VARDARTHRGLDFASHTFLRIGIVLLGFQVSIAQIVALGALPFAALILIMAVAFAAGLAGARLSRQSPYAGLLAGGATAI CGASAALALYGIVGKERLSQAQFALTLVGVSMASALAMSLYPAIAAELELSDAQAGYLIGASIHDVGQAIGGAYAVSDAA GIDATIVKLARVTLLAPVVLLVSLVIGPARAGPSRPSWRRLGMPWFITLFLAVVAVNSLIDLPAVAATKALAASKALLLL AVTATAMRSRTDLLLELGWRAAAPVMAASLASFAAALFFVMIGVGD
Sequences:
>Translated_366_residues MKDCEAMTRGPAPSEPYRGDLFGEIHLADMTDAAPTPGIARYFPGLAICAAAAGAAGWLSDHYGVPVILLGLLIGLALNF VARDARTHRGLDFASHTFLRIGIVLLGFQVSIAQIVALGALPFAALILIMAVAFAAGLAGARLSRQSPYAGLLAGGATAI CGASAALALYGIVGKERLSQAQFALTLVGVSMASALAMSLYPAIAAELELSDAQAGYLIGASIHDVGQAIGGAYAVSDAA GIDATIVKLARVTLLAPVVLLVSLVIGPARAGPSRPSWRRLGMPWFITLFLAVVAVNSLIDLPAVAATKALAASKALLLL AVTATAMRSRTDLLLELGWRAAAPVMAASLASFAAALFFVMIGVGD >Mature_366_residues MKDCEAMTRGPAPSEPYRGDLFGEIHLADMTDAAPTPGIARYFPGLAICAAAAGAAGWLSDHYGVPVILLGLLIGLALNF VARDARTHRGLDFASHTFLRIGIVLLGFQVSIAQIVALGALPFAALILIMAVAFAAGLAGARLSRQSPYAGLLAGGATAI CGASAALALYGIVGKERLSQAQFALTLVGVSMASALAMSLYPAIAAELELSDAQAGYLIGASIHDVGQAIGGAYAVSDAA GIDATIVKLARVTLLAPVVLLVSLVIGPARAGPSRPSWRRLGMPWFITLFLAVVAVNSLIDLPAVAATKALAASKALLLL AVTATAMRSRTDLLLELGWRAAAPVMAASLASFAAALFFVMIGVGD
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=333, Percent_Identity=26.7267267267267, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 37342; Mature: 37342
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS00501 SPASE_I_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDCEAMTRGPAPSEPYRGDLFGEIHLADMTDAAPTPGIARYFPGLAICAAAAGAAGWLS CCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHCCHHHHHHHHHCHHHHHH DHYGVPVILLGLLIGLALNFVARDARTHRGLDFASHTFLRIGIVLLGFQVSIAQIVALGA CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPFAALILIMAVAFAAGLAGARLSRQSPYAGLLAGGATAICGASAALALYGIVGKERLSQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AQFALTLVGVSMASALAMSLYPAIAAELELSDAQAGYLIGASIHDVGQAIGGAYAVSDAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHCCHHEECCCC GIDATIVKLARVTLLAPVVLLVSLVIGPARAGPSRPSWRRLGMPWFITLFLAVVAVNSLI CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHH DLPAVAATKALAASKALLLLAVTATAMRSRTDLLLELGWRAAAPVMAASLASFAAALFFV HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH MIGVGD HHCCCC >Mature Secondary Structure MKDCEAMTRGPAPSEPYRGDLFGEIHLADMTDAAPTPGIARYFPGLAICAAAAGAAGWLS CCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHCCHHHHHHHHHCHHHHHH DHYGVPVILLGLLIGLALNFVARDARTHRGLDFASHTFLRIGIVLLGFQVSIAQIVALGA CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPFAALILIMAVAFAAGLAGARLSRQSPYAGLLAGGATAICGASAALALYGIVGKERLSQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AQFALTLVGVSMASALAMSLYPAIAAELELSDAQAGYLIGASIHDVGQAIGGAYAVSDAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHCCHHEECCCC GIDATIVKLARVTLLAPVVLLVSLVIGPARAGPSRPSWRRLGMPWFITLFLAVVAVNSLI CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHH DLPAVAATKALAASKALLLLAVTATAMRSRTDLLLELGWRAAAPVMAASLASFAAALFFV HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH MIGVGD HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12093901 [H]