| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is fyuA [H]
Identifier: 103487149
GI number: 103487149
Start: 1750515
End: 1752908
Strand: Direct
Name: fyuA [H]
Synonym: Sala_1664
Alternate gene names: 103487149
Gene position: 1750515-1752908 (Clockwise)
Preceding gene: 103487141
Following gene: 103487152
Centisome position: 52.33
GC content: 62.7
Gene sequence:
>2394_bases ATGCCGAAACAAGAGGCGCTTTCCCTGTGGCCGGGGCCGGCCGCAGAAACGCGCCCAGATCGCTTATGGGAGGAGAATGC CATGCGTGCGTCCAGCTTTACCTTTATTCGTACCGTGCCCGCTGCGGTCAGCGCGATCGCAATCGCCTTTGCCACGTCCG CCCAGGCGCAAGAAGTCGAAGAGATCATCGTCACCGCGCAAAAGGTCGAGGAAAATGTCCAGAAGGTCCCGATCGCGATC ACCGCGGTGTCCGGCGACCGCCTCGAAGCCACCGGCACGACCAGCCTGGAAGGGATCACGCGCCTTGTCCCGTCGGTGAC CTTCCGCAAGGGCACGACAAGCGCGAACAGCGCCATCGTGATGCGCGGCGTCGGGACGATCACCTTTTCGATCGCCGCCG AACCGAGCGTATCGACGGTGATCGACGGCATCGTGCTCAGTCGCTCGGGGCAGGCTTTCATGGACCTCGTCGATGCCGAA CGTCTCGAGGTGCTGCGCGGGCCGCAGGGAACGCTCTTCGGCAAGAATGCGTCGGCGGGGCTCGTCAACATCGTGTCGAA AGGGGGCACGGACCAGCTCGAAGCCGAAGCGAAGGCCGAATGGTTCGAAGGCGACGAGTATCGCCTGCGCGCCTCGGTCG CAGGACCGCTCGGCGGCGACTGGAGCGGCCGCGTCACCGGCTTCTACGGCAGCTACGACGGCAATGTCACGAACATCAAC GGCGGTCGAAACCGCAAGGTCAATGGTTACGAACATTGGGGCACGCGGGGCATCGTGGACTATCGGGGCGACGGCGCGCG CCTCCGCTTCATCGCGGACTATTTCAAGGCCGACGACGATTGCTGCGCCGACGTGACGGGAGCGAGCCGCGGCGCCGTGC TCGATGCCGAACTCGGTCTTCCCGATGGCGTGGCGCTTGGCGAGAACCAGCGCTTCATCAACCACAATCTGGTCACGCAA ACGCGCGACAAGCAGTGGAGCCTGACCGCCAGCGGCGACTTCGACCTCACCGATACGCACACGCTCAGCGTGGTCGCCGG TTATCGCAACTGGGAGAATCGAGAGATTCGCGAAGGCGACTTCCTGCCGCGCGCGATCGTCGGAACGGCGGAGCTGCACG ATGACGGGCTGGTGAAAACGCAGCAATTCTCGGTAGAGGCGCGTATCGCATCCGACCAGTCGATGCCCTTTTTCTATCAG GTCGGCGCCTTTGCCTGGCATTCGGACAACAAGCAGGACTTCACGCGTCGCGACATCAGCTGCGCCACCTCGACGCTGCC GGTCGATCCGGCGACGGGAGCACGGCCCTGCAATGTCAACGACATGGTCAATACGCTGTTCCCGACAGCGACGTCCAACA GCGACGTCAATTCGACCAACTTCGCGCTCTTCGGACAGGCGACCTATCGCTTCAACGATCTGATCGCGCTGACCGGCGGC CTTCGCTACACGTGGGACGATCTGAGCTTCACGCACATCCGCGCGCCCGGCGTCAATGCGTCGACCGGCCTGCCCGCAAC CGGACCTGGCATCTCGGGCAACCCCGCGGGCGGCACCGTCGCATCCGGCGGCACGGGTCTCAACACCTCAAGCGGGTCGA GCAGCAACGGCAATCTGTCGGGCAAGGCGGTGCTCCAGTTCACGCCGTCGGACGACATCATGCTCTATGGCAGCTATACA CGCGGGTATAAGGGGCCGGCGTTCAACGTTTTCTTCAACCACACGGCGCCGACCAACGCGGTTCCGATCGACGAGGAAAC ATCGGACGCTTTCGAGATCGGCCTCAAATCGCGCTTCCTCGACAACAAGGTTCAGCTCAACCTCGCGGGTTTCAGCGTCG AATATGACGGCTTTCAGGCGAATAATTTCGTGCTTCTGAACGGCGCGGTCGTCACGAACCTGACCAACGCTGGCACGGTA AAGAGCGAAGGTTTCGAGGCCGATCTCACCGCCGTGCCGGTGGACGGGCTGACCCTGCGCGGAAGTGCGGCCTATGCCGA TGCGAAGGTCAAGAGGTTCAACCCGAACCCGCTGACCAACGCGCCCGATGCGCGCGATGGAACGCGGCTCCCGCTTGCAC CGAAGTTCACCTATACGCTCGGCGCCGACTATGACGTTCCGGTGGGTGGCATGATATTGTATCTGGGCACGGATTATCGA CACGTCTCGAAGCAATTTTCCGATCTCGGCGAACAGGGCGTTATCGACGCCTATGGCCAATGGAATGCGTCGATCGGCAT TTCGGATGCGGAGGATCGTTACCGCCTGACTTTCCACGCCCGGAACATCAGCGACGAAAGCTACGTCCTGCTCAATGTCT CAAATGGTCAGCGCCTCCAGATCCCGCGCGACGCCGACCGCTATTTCGGCGTCAGCCTGCGCGCGCGTATGTAA
Upstream 100 bases:
>100_bases CCTTGCTTCCTCTCGCCGCGTGATTTTTGAACCATAAATCCCGCGCCACCGCAAGCTCAATATGACACCGCTTGACATAT GCAGTCGGCGGGAGCATGCA
Downstream 100 bases:
>100_bases CCGGATGGGCCCGTCCCCCGCAAGCGACGGGGGCGGGCTCATTCCGGACGTCTACGGGATCGGCAGCCCTCCTGCGACCA TCGCAGGGGGCATTTTCTTT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 797; Mature: 796
Protein sequence:
>797_residues MPKQEALSLWPGPAAETRPDRLWEENAMRASSFTFIRTVPAAVSAIAIAFATSAQAQEVEEIIVTAQKVEENVQKVPIAI TAVSGDRLEATGTTSLEGITRLVPSVTFRKGTTSANSAIVMRGVGTITFSIAAEPSVSTVIDGIVLSRSGQAFMDLVDAE RLEVLRGPQGTLFGKNASAGLVNIVSKGGTDQLEAEAKAEWFEGDEYRLRASVAGPLGGDWSGRVTGFYGSYDGNVTNIN GGRNRKVNGYEHWGTRGIVDYRGDGARLRFIADYFKADDDCCADVTGASRGAVLDAELGLPDGVALGENQRFINHNLVTQ TRDKQWSLTASGDFDLTDTHTLSVVAGYRNWENREIREGDFLPRAIVGTAELHDDGLVKTQQFSVEARIASDQSMPFFYQ VGAFAWHSDNKQDFTRRDISCATSTLPVDPATGARPCNVNDMVNTLFPTATSNSDVNSTNFALFGQATYRFNDLIALTGG LRYTWDDLSFTHIRAPGVNASTGLPATGPGISGNPAGGTVASGGTGLNTSSGSSSNGNLSGKAVLQFTPSDDIMLYGSYT RGYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSRFLDNKVQLNLAGFSVEYDGFQANNFVLLNGAVVTNLTNAGTV KSEGFEADLTAVPVDGLTLRGSAAYADAKVKRFNPNPLTNAPDARDGTRLPLAPKFTYTLGADYDVPVGGMILYLGTDYR HVSKQFSDLGEQGVIDAYGQWNASIGISDAEDRYRLTFHARNISDESYVLLNVSNGQRLQIPRDADRYFGVSLRARM
Sequences:
>Translated_797_residues MPKQEALSLWPGPAAETRPDRLWEENAMRASSFTFIRTVPAAVSAIAIAFATSAQAQEVEEIIVTAQKVEENVQKVPIAI TAVSGDRLEATGTTSLEGITRLVPSVTFRKGTTSANSAIVMRGVGTITFSIAAEPSVSTVIDGIVLSRSGQAFMDLVDAE RLEVLRGPQGTLFGKNASAGLVNIVSKGGTDQLEAEAKAEWFEGDEYRLRASVAGPLGGDWSGRVTGFYGSYDGNVTNIN GGRNRKVNGYEHWGTRGIVDYRGDGARLRFIADYFKADDDCCADVTGASRGAVLDAELGLPDGVALGENQRFINHNLVTQ TRDKQWSLTASGDFDLTDTHTLSVVAGYRNWENREIREGDFLPRAIVGTAELHDDGLVKTQQFSVEARIASDQSMPFFYQ VGAFAWHSDNKQDFTRRDISCATSTLPVDPATGARPCNVNDMVNTLFPTATSNSDVNSTNFALFGQATYRFNDLIALTGG LRYTWDDLSFTHIRAPGVNASTGLPATGPGISGNPAGGTVASGGTGLNTSSGSSSNGNLSGKAVLQFTPSDDIMLYGSYT RGYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSRFLDNKVQLNLAGFSVEYDGFQANNFVLLNGAVVTNLTNAGTV KSEGFEADLTAVPVDGLTLRGSAAYADAKVKRFNPNPLTNAPDARDGTRLPLAPKFTYTLGADYDVPVGGMILYLGTDYR HVSKQFSDLGEQGVIDAYGQWNASIGISDAEDRYRLTFHARNISDESYVLLNVSNGQRLQIPRDADRYFGVSLRARM >Mature_796_residues PKQEALSLWPGPAAETRPDRLWEENAMRASSFTFIRTVPAAVSAIAIAFATSAQAQEVEEIIVTAQKVEENVQKVPIAIT AVSGDRLEATGTTSLEGITRLVPSVTFRKGTTSANSAIVMRGVGTITFSIAAEPSVSTVIDGIVLSRSGQAFMDLVDAER LEVLRGPQGTLFGKNASAGLVNIVSKGGTDQLEAEAKAEWFEGDEYRLRASVAGPLGGDWSGRVTGFYGSYDGNVTNING GRNRKVNGYEHWGTRGIVDYRGDGARLRFIADYFKADDDCCADVTGASRGAVLDAELGLPDGVALGENQRFINHNLVTQT RDKQWSLTASGDFDLTDTHTLSVVAGYRNWENREIREGDFLPRAIVGTAELHDDGLVKTQQFSVEARIASDQSMPFFYQV GAFAWHSDNKQDFTRRDISCATSTLPVDPATGARPCNVNDMVNTLFPTATSNSDVNSTNFALFGQATYRFNDLIALTGGL RYTWDDLSFTHIRAPGVNASTGLPATGPGISGNPAGGTVASGGTGLNTSSGSSSNGNLSGKAVLQFTPSDDIMLYGSYTR GYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSRFLDNKVQLNLAGFSVEYDGFQANNFVLLNGAVVTNLTNAGTVK SEGFEADLTAVPVDGLTLRGSAAYADAKVKRFNPNPLTNAPDARDGTRLPLAPKFTYTLGADYDVPVGGMILYLGTDYRH VSKQFSDLGEQGVIDAYGQWNASIGISDAEDRYRLTFHARNISDESYVLLNVSNGQRLQIPRDADRYFGVSLRARM
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=204, Percent_Identity=28.4313725490196, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 85665; Mature: 85534
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKQEALSLWPGPAAETRPDRLWEENAMRASSFTFIRTVPAAVSAIAIAFATSAQAQEVE CCCCCCEEECCCCCCCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHH EIIVTAQKVEENVQKVPIAITAVSGDRLEATGTTSLEGITRLVPSVTFRKGTTSANSAIV HHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCHHHHHHHHCCCEEECCCCCCCCEEE MRGVGTITFSIAAEPSVSTVIDGIVLSRSGQAFMDLVDAERLEVLRGPQGTLFGKNASAG EEECCEEEEEEECCCCHHHHHCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCC LVNIVSKGGTDQLEAEAKAEWFEGDEYRLRASVAGPLGGDWSGRVTGFYGSYDGNVTNIN EEEEECCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEECC GGRNRKVNGYEHWGTRGIVDYRGDGARLRFIADYFKADDDCCADVTGASRGAVLDAELGL CCCCCCCCCHHCCCCCCEEEECCCCCEEEEEEHHHCCCCCHHCCCCCCCCCEEEEECCCC PDGVALGENQRFINHNLVTQTRDKQWSLTASGDFDLTDTHTLSVVAGYRNWENREIREGD CCCEEECCCCEEECCCCEECCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCC FLPRAIVGTAELHDDGLVKTQQFSVEARIASDQSMPFFYQVGAFAWHSDNKQDFTRRDIS CCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCEEEEECEEEEECCCCCHHHHHHHH CATSTLPVDPATGARPCNVNDMVNTLFPTATSNSDVNSTNFALFGQATYRFNDLIALTGG HHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECEEEEEECC LRYTWDDLSFTHIRAPGVNASTGLPATGPGISGNPAGGTVASGGTGLNTSSGSSSNGNLS CEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC GKAVLQFTPSDDIMLYGSYTRGYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSRFL CEEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCHHHHCC DNKVQLNLAGFSVEYDGFQANNFVLLNGAVVTNLTNAGTVKSEGFEADLTAVPVDGLTLR CCEEEEEEEEEEEEECCEECCCEEEECCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEC GSAAYADAKVKRFNPNPLTNAPDARDGTRLPLAPKFTYTLGADYDVPVGGMILYLGTDYR CCCEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCHH HVSKQFSDLGEQGVIDAYGQWNASIGISDAEDRYRLTFHARNISDESYVLLNVSNGQRLQ HHHHHHHHCCCCCCEECCCCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEE IPRDADRYFGVSLRARM CCCCCCHHCCEEEEECC >Mature Secondary Structure PKQEALSLWPGPAAETRPDRLWEENAMRASSFTFIRTVPAAVSAIAIAFATSAQAQEVE CCCCCEEECCCCCCCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHH EIIVTAQKVEENVQKVPIAITAVSGDRLEATGTTSLEGITRLVPSVTFRKGTTSANSAIV HHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCHHHHHHHHCCCEEECCCCCCCCEEE MRGVGTITFSIAAEPSVSTVIDGIVLSRSGQAFMDLVDAERLEVLRGPQGTLFGKNASAG EEECCEEEEEEECCCCHHHHHCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCC LVNIVSKGGTDQLEAEAKAEWFEGDEYRLRASVAGPLGGDWSGRVTGFYGSYDGNVTNIN EEEEECCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEECC GGRNRKVNGYEHWGTRGIVDYRGDGARLRFIADYFKADDDCCADVTGASRGAVLDAELGL CCCCCCCCCHHCCCCCCEEEECCCCCEEEEEEHHHCCCCCHHCCCCCCCCCEEEEECCCC PDGVALGENQRFINHNLVTQTRDKQWSLTASGDFDLTDTHTLSVVAGYRNWENREIREGD CCCEEECCCCEEECCCCEECCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCC FLPRAIVGTAELHDDGLVKTQQFSVEARIASDQSMPFFYQVGAFAWHSDNKQDFTRRDIS CCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCEEEEECEEEEECCCCCHHHHHHHH CATSTLPVDPATGARPCNVNDMVNTLFPTATSNSDVNSTNFALFGQATYRFNDLIALTGG HHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECEEEEEECC LRYTWDDLSFTHIRAPGVNASTGLPATGPGISGNPAGGTVASGGTGLNTSSGSSSNGNLS CEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC GKAVLQFTPSDDIMLYGSYTRGYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSRFL CEEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCHHHHCC DNKVQLNLAGFSVEYDGFQANNFVLLNGAVVTNLTNAGTVKSEGFEADLTAVPVDGLTLR CCEEEEEEEEEEEEECCEECCCEEEECCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEC GSAAYADAKVKRFNPNPLTNAPDARDGTRLPLAPKFTYTLGADYDVPVGGMILYLGTDYR CCCEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCHH HVSKQFSDLGEQGVIDAYGQWNASIGISDAEDRYRLTFHARNISDESYVLLNVSNGQRLQ HHHHHHHHCCCCCCEECCCCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEE IPRDADRYFGVSLRARM CCCCCCHHCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA