Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is fyuA [H]

Identifier: 103487149

GI number: 103487149

Start: 1750515

End: 1752908

Strand: Direct

Name: fyuA [H]

Synonym: Sala_1664

Alternate gene names: 103487149

Gene position: 1750515-1752908 (Clockwise)

Preceding gene: 103487141

Following gene: 103487152

Centisome position: 52.33

GC content: 62.7

Gene sequence:

>2394_bases
ATGCCGAAACAAGAGGCGCTTTCCCTGTGGCCGGGGCCGGCCGCAGAAACGCGCCCAGATCGCTTATGGGAGGAGAATGC
CATGCGTGCGTCCAGCTTTACCTTTATTCGTACCGTGCCCGCTGCGGTCAGCGCGATCGCAATCGCCTTTGCCACGTCCG
CCCAGGCGCAAGAAGTCGAAGAGATCATCGTCACCGCGCAAAAGGTCGAGGAAAATGTCCAGAAGGTCCCGATCGCGATC
ACCGCGGTGTCCGGCGACCGCCTCGAAGCCACCGGCACGACCAGCCTGGAAGGGATCACGCGCCTTGTCCCGTCGGTGAC
CTTCCGCAAGGGCACGACAAGCGCGAACAGCGCCATCGTGATGCGCGGCGTCGGGACGATCACCTTTTCGATCGCCGCCG
AACCGAGCGTATCGACGGTGATCGACGGCATCGTGCTCAGTCGCTCGGGGCAGGCTTTCATGGACCTCGTCGATGCCGAA
CGTCTCGAGGTGCTGCGCGGGCCGCAGGGAACGCTCTTCGGCAAGAATGCGTCGGCGGGGCTCGTCAACATCGTGTCGAA
AGGGGGCACGGACCAGCTCGAAGCCGAAGCGAAGGCCGAATGGTTCGAAGGCGACGAGTATCGCCTGCGCGCCTCGGTCG
CAGGACCGCTCGGCGGCGACTGGAGCGGCCGCGTCACCGGCTTCTACGGCAGCTACGACGGCAATGTCACGAACATCAAC
GGCGGTCGAAACCGCAAGGTCAATGGTTACGAACATTGGGGCACGCGGGGCATCGTGGACTATCGGGGCGACGGCGCGCG
CCTCCGCTTCATCGCGGACTATTTCAAGGCCGACGACGATTGCTGCGCCGACGTGACGGGAGCGAGCCGCGGCGCCGTGC
TCGATGCCGAACTCGGTCTTCCCGATGGCGTGGCGCTTGGCGAGAACCAGCGCTTCATCAACCACAATCTGGTCACGCAA
ACGCGCGACAAGCAGTGGAGCCTGACCGCCAGCGGCGACTTCGACCTCACCGATACGCACACGCTCAGCGTGGTCGCCGG
TTATCGCAACTGGGAGAATCGAGAGATTCGCGAAGGCGACTTCCTGCCGCGCGCGATCGTCGGAACGGCGGAGCTGCACG
ATGACGGGCTGGTGAAAACGCAGCAATTCTCGGTAGAGGCGCGTATCGCATCCGACCAGTCGATGCCCTTTTTCTATCAG
GTCGGCGCCTTTGCCTGGCATTCGGACAACAAGCAGGACTTCACGCGTCGCGACATCAGCTGCGCCACCTCGACGCTGCC
GGTCGATCCGGCGACGGGAGCACGGCCCTGCAATGTCAACGACATGGTCAATACGCTGTTCCCGACAGCGACGTCCAACA
GCGACGTCAATTCGACCAACTTCGCGCTCTTCGGACAGGCGACCTATCGCTTCAACGATCTGATCGCGCTGACCGGCGGC
CTTCGCTACACGTGGGACGATCTGAGCTTCACGCACATCCGCGCGCCCGGCGTCAATGCGTCGACCGGCCTGCCCGCAAC
CGGACCTGGCATCTCGGGCAACCCCGCGGGCGGCACCGTCGCATCCGGCGGCACGGGTCTCAACACCTCAAGCGGGTCGA
GCAGCAACGGCAATCTGTCGGGCAAGGCGGTGCTCCAGTTCACGCCGTCGGACGACATCATGCTCTATGGCAGCTATACA
CGCGGGTATAAGGGGCCGGCGTTCAACGTTTTCTTCAACCACACGGCGCCGACCAACGCGGTTCCGATCGACGAGGAAAC
ATCGGACGCTTTCGAGATCGGCCTCAAATCGCGCTTCCTCGACAACAAGGTTCAGCTCAACCTCGCGGGTTTCAGCGTCG
AATATGACGGCTTTCAGGCGAATAATTTCGTGCTTCTGAACGGCGCGGTCGTCACGAACCTGACCAACGCTGGCACGGTA
AAGAGCGAAGGTTTCGAGGCCGATCTCACCGCCGTGCCGGTGGACGGGCTGACCCTGCGCGGAAGTGCGGCCTATGCCGA
TGCGAAGGTCAAGAGGTTCAACCCGAACCCGCTGACCAACGCGCCCGATGCGCGCGATGGAACGCGGCTCCCGCTTGCAC
CGAAGTTCACCTATACGCTCGGCGCCGACTATGACGTTCCGGTGGGTGGCATGATATTGTATCTGGGCACGGATTATCGA
CACGTCTCGAAGCAATTTTCCGATCTCGGCGAACAGGGCGTTATCGACGCCTATGGCCAATGGAATGCGTCGATCGGCAT
TTCGGATGCGGAGGATCGTTACCGCCTGACTTTCCACGCCCGGAACATCAGCGACGAAAGCTACGTCCTGCTCAATGTCT
CAAATGGTCAGCGCCTCCAGATCCCGCGCGACGCCGACCGCTATTTCGGCGTCAGCCTGCGCGCGCGTATGTAA

Upstream 100 bases:

>100_bases
CCTTGCTTCCTCTCGCCGCGTGATTTTTGAACCATAAATCCCGCGCCACCGCAAGCTCAATATGACACCGCTTGACATAT
GCAGTCGGCGGGAGCATGCA

Downstream 100 bases:

>100_bases
CCGGATGGGCCCGTCCCCCGCAAGCGACGGGGGCGGGCTCATTCCGGACGTCTACGGGATCGGCAGCCCTCCTGCGACCA
TCGCAGGGGGCATTTTCTTT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: IPR65; IRPC [H]

Number of amino acids: Translated: 797; Mature: 796

Protein sequence:

>797_residues
MPKQEALSLWPGPAAETRPDRLWEENAMRASSFTFIRTVPAAVSAIAIAFATSAQAQEVEEIIVTAQKVEENVQKVPIAI
TAVSGDRLEATGTTSLEGITRLVPSVTFRKGTTSANSAIVMRGVGTITFSIAAEPSVSTVIDGIVLSRSGQAFMDLVDAE
RLEVLRGPQGTLFGKNASAGLVNIVSKGGTDQLEAEAKAEWFEGDEYRLRASVAGPLGGDWSGRVTGFYGSYDGNVTNIN
GGRNRKVNGYEHWGTRGIVDYRGDGARLRFIADYFKADDDCCADVTGASRGAVLDAELGLPDGVALGENQRFINHNLVTQ
TRDKQWSLTASGDFDLTDTHTLSVVAGYRNWENREIREGDFLPRAIVGTAELHDDGLVKTQQFSVEARIASDQSMPFFYQ
VGAFAWHSDNKQDFTRRDISCATSTLPVDPATGARPCNVNDMVNTLFPTATSNSDVNSTNFALFGQATYRFNDLIALTGG
LRYTWDDLSFTHIRAPGVNASTGLPATGPGISGNPAGGTVASGGTGLNTSSGSSSNGNLSGKAVLQFTPSDDIMLYGSYT
RGYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSRFLDNKVQLNLAGFSVEYDGFQANNFVLLNGAVVTNLTNAGTV
KSEGFEADLTAVPVDGLTLRGSAAYADAKVKRFNPNPLTNAPDARDGTRLPLAPKFTYTLGADYDVPVGGMILYLGTDYR
HVSKQFSDLGEQGVIDAYGQWNASIGISDAEDRYRLTFHARNISDESYVLLNVSNGQRLQIPRDADRYFGVSLRARM

Sequences:

>Translated_797_residues
MPKQEALSLWPGPAAETRPDRLWEENAMRASSFTFIRTVPAAVSAIAIAFATSAQAQEVEEIIVTAQKVEENVQKVPIAI
TAVSGDRLEATGTTSLEGITRLVPSVTFRKGTTSANSAIVMRGVGTITFSIAAEPSVSTVIDGIVLSRSGQAFMDLVDAE
RLEVLRGPQGTLFGKNASAGLVNIVSKGGTDQLEAEAKAEWFEGDEYRLRASVAGPLGGDWSGRVTGFYGSYDGNVTNIN
GGRNRKVNGYEHWGTRGIVDYRGDGARLRFIADYFKADDDCCADVTGASRGAVLDAELGLPDGVALGENQRFINHNLVTQ
TRDKQWSLTASGDFDLTDTHTLSVVAGYRNWENREIREGDFLPRAIVGTAELHDDGLVKTQQFSVEARIASDQSMPFFYQ
VGAFAWHSDNKQDFTRRDISCATSTLPVDPATGARPCNVNDMVNTLFPTATSNSDVNSTNFALFGQATYRFNDLIALTGG
LRYTWDDLSFTHIRAPGVNASTGLPATGPGISGNPAGGTVASGGTGLNTSSGSSSNGNLSGKAVLQFTPSDDIMLYGSYT
RGYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSRFLDNKVQLNLAGFSVEYDGFQANNFVLLNGAVVTNLTNAGTV
KSEGFEADLTAVPVDGLTLRGSAAYADAKVKRFNPNPLTNAPDARDGTRLPLAPKFTYTLGADYDVPVGGMILYLGTDYR
HVSKQFSDLGEQGVIDAYGQWNASIGISDAEDRYRLTFHARNISDESYVLLNVSNGQRLQIPRDADRYFGVSLRARM
>Mature_796_residues
PKQEALSLWPGPAAETRPDRLWEENAMRASSFTFIRTVPAAVSAIAIAFATSAQAQEVEEIIVTAQKVEENVQKVPIAIT
AVSGDRLEATGTTSLEGITRLVPSVTFRKGTTSANSAIVMRGVGTITFSIAAEPSVSTVIDGIVLSRSGQAFMDLVDAER
LEVLRGPQGTLFGKNASAGLVNIVSKGGTDQLEAEAKAEWFEGDEYRLRASVAGPLGGDWSGRVTGFYGSYDGNVTNING
GRNRKVNGYEHWGTRGIVDYRGDGARLRFIADYFKADDDCCADVTGASRGAVLDAELGLPDGVALGENQRFINHNLVTQT
RDKQWSLTASGDFDLTDTHTLSVVAGYRNWENREIREGDFLPRAIVGTAELHDDGLVKTQQFSVEARIASDQSMPFFYQV
GAFAWHSDNKQDFTRRDISCATSTLPVDPATGARPCNVNDMVNTLFPTATSNSDVNSTNFALFGQATYRFNDLIALTGGL
RYTWDDLSFTHIRAPGVNASTGLPATGPGISGNPAGGTVASGGTGLNTSSGSSSNGNLSGKAVLQFTPSDDIMLYGSYTR
GYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSRFLDNKVQLNLAGFSVEYDGFQANNFVLLNGAVVTNLTNAGTVK
SEGFEADLTAVPVDGLTLRGSAAYADAKVKRFNPNPLTNAPDARDGTRLPLAPKFTYTLGADYDVPVGGMILYLGTDYRH
VSKQFSDLGEQGVIDAYGQWNASIGISDAEDRYRLTFHARNISDESYVLLNVSNGQRLQIPRDADRYFGVSLRARM

Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1788478, Length=204, Percent_Identity=28.4313725490196, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 85665; Mature: 85534

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKQEALSLWPGPAAETRPDRLWEENAMRASSFTFIRTVPAAVSAIAIAFATSAQAQEVE
CCCCCCEEECCCCCCCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHH
EIIVTAQKVEENVQKVPIAITAVSGDRLEATGTTSLEGITRLVPSVTFRKGTTSANSAIV
HHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCHHHHHHHHCCCEEECCCCCCCCEEE
MRGVGTITFSIAAEPSVSTVIDGIVLSRSGQAFMDLVDAERLEVLRGPQGTLFGKNASAG
EEECCEEEEEEECCCCHHHHHCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCC
LVNIVSKGGTDQLEAEAKAEWFEGDEYRLRASVAGPLGGDWSGRVTGFYGSYDGNVTNIN
EEEEECCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEECC
GGRNRKVNGYEHWGTRGIVDYRGDGARLRFIADYFKADDDCCADVTGASRGAVLDAELGL
CCCCCCCCCHHCCCCCCEEEECCCCCEEEEEEHHHCCCCCHHCCCCCCCCCEEEEECCCC
PDGVALGENQRFINHNLVTQTRDKQWSLTASGDFDLTDTHTLSVVAGYRNWENREIREGD
CCCEEECCCCEEECCCCEECCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCC
FLPRAIVGTAELHDDGLVKTQQFSVEARIASDQSMPFFYQVGAFAWHSDNKQDFTRRDIS
CCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCEEEEECEEEEECCCCCHHHHHHHH
CATSTLPVDPATGARPCNVNDMVNTLFPTATSNSDVNSTNFALFGQATYRFNDLIALTGG
HHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECEEEEEECC
LRYTWDDLSFTHIRAPGVNASTGLPATGPGISGNPAGGTVASGGTGLNTSSGSSSNGNLS
CEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
GKAVLQFTPSDDIMLYGSYTRGYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSRFL
CEEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCHHHHCC
DNKVQLNLAGFSVEYDGFQANNFVLLNGAVVTNLTNAGTVKSEGFEADLTAVPVDGLTLR
CCEEEEEEEEEEEEECCEECCCEEEECCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEC
GSAAYADAKVKRFNPNPLTNAPDARDGTRLPLAPKFTYTLGADYDVPVGGMILYLGTDYR
CCCEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCHH
HVSKQFSDLGEQGVIDAYGQWNASIGISDAEDRYRLTFHARNISDESYVLLNVSNGQRLQ
HHHHHHHHCCCCCCEECCCCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEE
IPRDADRYFGVSLRARM
CCCCCCHHCCEEEEECC
>Mature Secondary Structure 
PKQEALSLWPGPAAETRPDRLWEENAMRASSFTFIRTVPAAVSAIAIAFATSAQAQEVE
CCCCCEEECCCCCCCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHH
EIIVTAQKVEENVQKVPIAITAVSGDRLEATGTTSLEGITRLVPSVTFRKGTTSANSAIV
HHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCHHHHHHHHCCCEEECCCCCCCCEEE
MRGVGTITFSIAAEPSVSTVIDGIVLSRSGQAFMDLVDAERLEVLRGPQGTLFGKNASAG
EEECCEEEEEEECCCCHHHHHCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCC
LVNIVSKGGTDQLEAEAKAEWFEGDEYRLRASVAGPLGGDWSGRVTGFYGSYDGNVTNIN
EEEEECCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEECC
GGRNRKVNGYEHWGTRGIVDYRGDGARLRFIADYFKADDDCCADVTGASRGAVLDAELGL
CCCCCCCCCHHCCCCCCEEEECCCCCEEEEEEHHHCCCCCHHCCCCCCCCCEEEEECCCC
PDGVALGENQRFINHNLVTQTRDKQWSLTASGDFDLTDTHTLSVVAGYRNWENREIREGD
CCCEEECCCCEEECCCCEECCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCC
FLPRAIVGTAELHDDGLVKTQQFSVEARIASDQSMPFFYQVGAFAWHSDNKQDFTRRDIS
CCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCEEEEECEEEEECCCCCHHHHHHHH
CATSTLPVDPATGARPCNVNDMVNTLFPTATSNSDVNSTNFALFGQATYRFNDLIALTGG
HHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECEEEEEECC
LRYTWDDLSFTHIRAPGVNASTGLPATGPGISGNPAGGTVASGGTGLNTSSGSSSNGNLS
CEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
GKAVLQFTPSDDIMLYGSYTRGYKGPAFNVFFNHTAPTNAVPIDEETSDAFEIGLKSRFL
CEEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCHHHHCC
DNKVQLNLAGFSVEYDGFQANNFVLLNGAVVTNLTNAGTVKSEGFEADLTAVPVDGLTLR
CCEEEEEEEEEEEEECCEECCCEEEECCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEC
GSAAYADAKVKRFNPNPLTNAPDARDGTRLPLAPKFTYTLGADYDVPVGGMILYLGTDYR
CCCEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCHH
HVSKQFSDLGEQGVIDAYGQWNASIGISDAEDRYRLTFHARNISDESYVLLNVSNGQRLQ
HHHHHHHHCCCCCCEECCCCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEE
IPRDADRYFGVSLRARM
CCCCCCHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA