| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487123
Identifier: 103487123
GI number: 103487123
Start: 1720378
End: 1721358
Strand: Direct
Name: 103487123
Synonym: Sala_1638
Alternate gene names: NA
Gene position: 1720378-1721358 (Clockwise)
Preceding gene: 103487122
Following gene: 103487124
Centisome position: 51.43
GC content: 64.93
Gene sequence:
>981_bases ATGGCTTTCAAGACGCGGATTACGGAGATGCTGGGGATTGCGCATCCGATCGTCCAGGGGGGGATGCAGAGCGTGGGCTA TGCCGAACTGGCGAGTGCGGTGTCGAACGCGGGCGGGCTTGGCATATTGACCGCGCTGACGCAGCCGGACCCTGGGGCAT TGCGCGCCGAGATCGAGCGCTGCCGCGCGATGACCGACAAGCCGTTCGGCGTGAACCTGACTGTATTTCCGACGATCAAC GCCCCCGACTACAAGGCCTATGCGCAGGCGATCATCGACGGCGGGGTCAAGATCGTCGAGACCGCGGGCACGCAGGCGGT GCGCGAGATATGGGAGATGCTGAAGCCGCACGGGGTCACCATCCTCCACAAATGCACCGCGGTGCGCCACGCGCTGTCGG CCGAGCGCGCGGGCTGCGACATCATTTCGATCGACGGCTTCGAATGCGCGGGCCACCCCGGCGAGGACGATGTTCCCGGC CTGATCCTGATCCCGGCCGCCGCCGACAAGGTGAAGATCCCGATGCTCGCCTCGGGCGGCTTCGGCGACGGGCGGGGGCT CGTCGCGGCGCTGTCGCTCGGCGCCGAAGGCATCAACATGGGCACACGCTTCTGCGCGACGGTCGAGGCGCCGATCCACG ACAATGTCAAACAGGCCTATATCGACAATGACGAGCGCGGCAGCTTCCTGATCTTCCGCAGCCTGAAAAACACCGCGCGG GTCGGCAAAAACGCGGTCAGCGAGGAGGTCGTGCGCCGCCTTTCGGTTCCCGGCGCCACCTTCGCCGACGTGGCCGAACT GGTCAACGGCAAGGCAGGTCGCGAACTGCTCGAAACCGGCGACCTTTCCAGGGGCGTGTTCTGGGCCGGAATGGTCCAGG GGCTCATCCACGACATCCCAACATGCCAGCAACTCGTCGAACGCATCATCAAGGAAGCACAAGATATCCTCGACCAAAGA CTCGCCGGGTTCAGAAGGTAG
Upstream 100 bases:
>100_bases GCGGTCGTTACGGCCTCGTCACCATGTGCGCCGCAGGCGGCATGGCGCCAGCGATCATCATCGAGCGGATCTGACCGGCT TTCCTGCGGGAGAATAGGAA
Downstream 100 bases:
>100_bases AGGCGGGAGCCGGGAGGAGCAGGCGCCGGGACGCGGAAGACGTGAACCAGTCCTCCGCAGCCTTTCCCTGGAAAATCGGC ACGAACTCCAGCCTGCTTGA
Product: 2-nitropropane dioxygenase, NPD
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MAFKTRITEMLGIAHPIVQGGMQSVGYAELASAVSNAGGLGILTALTQPDPGALRAEIERCRAMTDKPFGVNLTVFPTIN APDYKAYAQAIIDGGVKIVETAGTQAVREIWEMLKPHGVTILHKCTAVRHALSAERAGCDIISIDGFECAGHPGEDDVPG LILIPAAADKVKIPMLASGGFGDGRGLVAALSLGAEGINMGTRFCATVEAPIHDNVKQAYIDNDERGSFLIFRSLKNTAR VGKNAVSEEVVRRLSVPGATFADVAELVNGKAGRELLETGDLSRGVFWAGMVQGLIHDIPTCQQLVERIIKEAQDILDQR LAGFRR
Sequences:
>Translated_326_residues MAFKTRITEMLGIAHPIVQGGMQSVGYAELASAVSNAGGLGILTALTQPDPGALRAEIERCRAMTDKPFGVNLTVFPTIN APDYKAYAQAIIDGGVKIVETAGTQAVREIWEMLKPHGVTILHKCTAVRHALSAERAGCDIISIDGFECAGHPGEDDVPG LILIPAAADKVKIPMLASGGFGDGRGLVAALSLGAEGINMGTRFCATVEAPIHDNVKQAYIDNDERGSFLIFRSLKNTAR VGKNAVSEEVVRRLSVPGATFADVAELVNGKAGRELLETGDLSRGVFWAGMVQGLIHDIPTCQQLVERIIKEAQDILDQR LAGFRR >Mature_325_residues AFKTRITEMLGIAHPIVQGGMQSVGYAELASAVSNAGGLGILTALTQPDPGALRAEIERCRAMTDKPFGVNLTVFPTINA PDYKAYAQAIIDGGVKIVETAGTQAVREIWEMLKPHGVTILHKCTAVRHALSAERAGCDIISIDGFECAGHPGEDDVPGL ILIPAAADKVKIPMLASGGFGDGRGLVAALSLGAEGINMGTRFCATVEAPIHDNVKQAYIDNDERGSFLIFRSLKNTARV GKNAVSEEVVRRLSVPGATFADVAELVNGKAGRELLETGDLSRGVFWAGMVQGLIHDIPTCQQLVERIIKEAQDILDQRL AGFRR
Specific function: Catalyzes the oxidative denitrification of nitronates to their corresponding aldehydes and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 34667; Mature: 34536
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFKTRITEMLGIAHPIVQGGMQSVGYAELASAVSNAGGLGILTALTQPDPGALRAEIER CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHH CRAMTDKPFGVNLTVFPTINAPDYKAYAQAIIDGGVKIVETAGTQAVREIWEMLKPHGVT HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCH ILHKCTAVRHALSAERAGCDIISIDGFECAGHPGEDDVPGLILIPAAADKVKIPMLASGG HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCEECEEEECCC FGDGRGLVAALSLGAEGINMGTRFCATVEAPIHDNVKQAYIDNDERGSFLIFRSLKNTAR CCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEHHHHHHHH VGKNAVSEEVVRRLSVPGATFADVAELVNGKAGRELLETGDLSRGVFWAGMVQGLIHDIP HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCH TCQQLVERIIKEAQDILDQRLAGFRR HHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AFKTRITEMLGIAHPIVQGGMQSVGYAELASAVSNAGGLGILTALTQPDPGALRAEIER CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHH CRAMTDKPFGVNLTVFPTINAPDYKAYAQAIIDGGVKIVETAGTQAVREIWEMLKPHGVT HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCH ILHKCTAVRHALSAERAGCDIISIDGFECAGHPGEDDVPGLILIPAAADKVKIPMLASGG HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCEECEEEECCC FGDGRGLVAALSLGAEGINMGTRFCATVEAPIHDNVKQAYIDNDERGSFLIFRSLKNTAR CCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEHHHHHHHH VGKNAVSEEVVRRLSVPGATFADVAELVNGKAGRELLETGDLSRGVFWAGMVQGLIHDIP HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCH TCQQLVERIIKEAQDILDQRLAGFRR HHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]