| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yusZ [H]
Identifier: 103487104
GI number: 103487104
Start: 1699270
End: 1700259
Strand: Direct
Name: yusZ [H]
Synonym: Sala_1619
Alternate gene names: 103487104
Gene position: 1699270-1700259 (Clockwise)
Preceding gene: 103487103
Following gene: 103487106
Centisome position: 50.8
GC content: 68.69
Gene sequence:
>990_bases ATGCCGCATACCCCCAATCGCCGCGAAATCCTGGCCGGGGCCGCCGCGCTGTCCGCCGCCCCTGCCCTGCTCCACGCCGC GACGCCCGCGGGCGACCCGTCGCTGAAAGGCCGCACCATACTGATCACCGGCTGTTCGAGCGGGTTTGGGCGCATCGGCG CGCTCCACTATGCCCGGCTCGGCGCGAAGGTCATCGCGACGATGCGCGGGCTGCCGCGCCCCGAAGCCGAAAGCCTGGCG GCCGAAGCCGCGAAGGATAAGCTCGACCTCGATATCGTCGAGATCGACGTGACGAGCGATGCGTCGGTTGCGAGCGGGAC TGCAAAGGCGCTCGCCATCGCGGGCGGGCGCATCGACACGCTGGTCAACAATGCCGGGATCGGCATCACCGGGCCGGTCG AGGTGCAGGATATGGAAGCGACGCAGCTCATCTTCGACACCAATGTTTTTGGCATCCAGCGCATGCTGCGCGCGCTGTTG CCACAGATGCGCGCGGCGAAGGGCGGGCAGGTCTTCAACATTTCGTCGCAGCTCGGGCGCGTCATCGTGCCGGGTGGCGG CCATTATTCGGCGACCAAGTTCGCGGTCGAGGCGCTGTCCGAGCAGATGGCCTATGAACTGGTGCCGCATGGCATCGACG TGACGGTGATCCAGCCGGGGGGCTATCCGACGAAGGTGTGGGTCAATCGCAACGCCTATACCGGGGCATTAAAGGCGCGA AGCGATGCGGCGCTGCTCGACGCCTATGCGCCCTTCACGCGCGGCATGGGGACCGAGGACGGCAGCGGGCGCAGCGCCGA TCCCGCCGACGTGCCGCGCGCGATTGCCGAGATCATGGCGATGCCCGCGGGCAAACGGCCGCTGCGCCGCGCGGTGCATC CGGGGACCAGGCCGCAGGAAGCGATCAACCGCGTGTCGGCCGAGGTGCAGCTCGCGTGGCTGGGCGGGTCGCCGACGCTG GGACCACTGGTCAAGGCGGTCCACGACTGA
Upstream 100 bases:
>100_bases GCCAAAGGCGGACGTCGCGATCCCAAAGCCGCAGTCCAACCACCGATTTGGCACGCGCCGCCAACTAAGGCATGATGGCG TCCGAAAGGAGCCGTTCGCC
Downstream 100 bases:
>100_bases GGCGCGGGCGGGCCTATGGCGTCCGTTTGGGCGGCGGCGGCGGCGATCCGTCAGCGGTCTGCGACATCAAGGCGACACAC ATGGTCCGGTGGACCGGATG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MPHTPNRREILAGAAALSAAPALLHAATPAGDPSLKGRTILITGCSSGFGRIGALHYARLGAKVIATMRGLPRPEAESLA AEAAKDKLDLDIVEIDVTSDASVASGTAKALAIAGGRIDTLVNNAGIGITGPVEVQDMEATQLIFDTNVFGIQRMLRALL PQMRAAKGGQVFNISSQLGRVIVPGGGHYSATKFAVEALSEQMAYELVPHGIDVTVIQPGGYPTKVWVNRNAYTGALKAR SDAALLDAYAPFTRGMGTEDGSGRSADPADVPRAIAEIMAMPAGKRPLRRAVHPGTRPQEAINRVSAEVQLAWLGGSPTL GPLVKAVHD
Sequences:
>Translated_329_residues MPHTPNRREILAGAAALSAAPALLHAATPAGDPSLKGRTILITGCSSGFGRIGALHYARLGAKVIATMRGLPRPEAESLA AEAAKDKLDLDIVEIDVTSDASVASGTAKALAIAGGRIDTLVNNAGIGITGPVEVQDMEATQLIFDTNVFGIQRMLRALL PQMRAAKGGQVFNISSQLGRVIVPGGGHYSATKFAVEALSEQMAYELVPHGIDVTVIQPGGYPTKVWVNRNAYTGALKAR SDAALLDAYAPFTRGMGTEDGSGRSADPADVPRAIAEIMAMPAGKRPLRRAVHPGTRPQEAINRVSAEVQLAWLGGSPTL GPLVKAVHD >Mature_328_residues PHTPNRREILAGAAALSAAPALLHAATPAGDPSLKGRTILITGCSSGFGRIGALHYARLGAKVIATMRGLPRPEAESLAA EAAKDKLDLDIVEIDVTSDASVASGTAKALAIAGGRIDTLVNNAGIGITGPVEVQDMEATQLIFDTNVFGIQRMLRALLP QMRAAKGGQVFNISSQLGRVIVPGGGHYSATKFAVEALSEQMAYELVPHGIDVTVIQPGGYPTKVWVNRNAYTGALKARS DAALLDAYAPFTRGMGTEDGSGRSADPADVPRAIAEIMAMPAGKRPLRRAVHPGTRPQEAINRVSAEVQLAWLGGSPTLG PLVKAVHD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=286, Percent_Identity=33.5664335664336, Blast_Score=135, Evalue=7e-32, Organism=Homo sapiens, GI223718074, Length=193, Percent_Identity=37.3056994818653, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI44680136, Length=222, Percent_Identity=34.2342342342342, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI44680133, Length=222, Percent_Identity=34.2342342342342, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI17738292, Length=222, Percent_Identity=34.2342342342342, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI150247226, Length=194, Percent_Identity=36.5979381443299, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI20149619, Length=205, Percent_Identity=31.7073170731707, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI22507405, Length=195, Percent_Identity=32.3076923076923, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI19743808, Length=215, Percent_Identity=33.0232558139535, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI40548397, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI214010158, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI214010156, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI22758144, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI119392083, Length=191, Percent_Identity=31.9371727748691, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI50726952, Length=189, Percent_Identity=34.9206349206349, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI4503817, Length=188, Percent_Identity=27.1276595744681, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI40807363, Length=226, Percent_Identity=30.0884955752212, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=29.0155440414508, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI157739938, Length=189, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI4504503, Length=191, Percent_Identity=28.7958115183246, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI7705925, Length=194, Percent_Identity=32.4742268041237, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1786701, Length=210, Percent_Identity=32.3809523809524, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87082100, Length=187, Percent_Identity=36.3636363636364, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=34.2391304347826, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787526, Length=192, Percent_Identity=31.25, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787335, Length=195, Percent_Identity=31.7948717948718, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790717, Length=224, Percent_Identity=33.0357142857143, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786812, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788459, Length=185, Percent_Identity=31.3513513513514, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115534660, Length=193, Percent_Identity=34.1968911917098, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17507613, Length=223, Percent_Identity=35.4260089686099, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI32563809, Length=223, Percent_Identity=35.4260089686099, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71994604, Length=239, Percent_Identity=30.1255230125523, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17557780, Length=203, Percent_Identity=31.5270935960591, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71994600, Length=240, Percent_Identity=29.1666666666667, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193210355, Length=194, Percent_Identity=32.4742268041237, Blast_Score=78, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17559104, Length=190, Percent_Identity=33.6842105263158, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17567345, Length=197, Percent_Identity=30.4568527918782, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193204405, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562990, Length=195, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203115, Length=211, Percent_Identity=28.436018957346, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17562908, Length=214, Percent_Identity=29.9065420560748, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17562904, Length=203, Percent_Identity=29.5566502463054, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17531453, Length=218, Percent_Identity=29.3577981651376, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI193203117, Length=209, Percent_Identity=28.7081339712919, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71982365, Length=219, Percent_Identity=29.6803652968037, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=32.994923857868, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560150, Length=199, Percent_Identity=29.1457286432161, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=30.8080808080808, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17538486, Length=194, Percent_Identity=31.9587628865979, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17563726, Length=187, Percent_Identity=28.3422459893048, Blast_Score=65, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17538480, Length=195, Percent_Identity=29.2307692307692, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=31.5270935960591, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=33.1632653061224, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=32.258064516129, Blast_Score=63, Evalue=6e-11, Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=31.0204081632653, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=30.0813008130081, Blast_Score=89, Evalue=5e-18, Organism=Drosophila melanogaster, GI21358495, Length=210, Percent_Identity=30, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI281364892, Length=198, Percent_Identity=34.3434343434343, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI23397609, Length=213, Percent_Identity=33.8028169014084, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=29.6747967479675, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI21356301, Length=200, Percent_Identity=29.5, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24643142, Length=192, Percent_Identity=32.2916666666667, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI24651139, Length=190, Percent_Identity=29.4736842105263, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI24584752, Length=206, Percent_Identity=29.126213592233, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24640442, Length=232, Percent_Identity=26.2931034482759, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580925, Length=213, Percent_Identity=29.1079812206573, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24581726, Length=181, Percent_Identity=30.3867403314917, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 34242; Mature: 34111
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHTPNRREILAGAAALSAAPALLHAATPAGDPSLKGRTILITGCSSGFGRIGALHYARL CCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH GAKVIATMRGLPRPEAESLAAEAAKDKLDLDIVEIDVTSDASVASGTAKALAIAGGRIDT HHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHEEEEECCCHHH LVNNAGIGITGPVEVQDMEATQLIFDTNVFGIQRMLRALLPQMRAAKGGQVFNISSQLGR HHCCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCE VIVPGGGHYSATKFAVEALSEQMAYELVPHGIDVTVIQPGGYPTKVWVNRNAYTGALKAR EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCEECEEECC SDAALLDAYAPFTRGMGTEDGSGRSADPADVPRAIAEIMAMPAGKRPLRRAVHPGTRPQE CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHH AINRVSAEVQLAWLGGSPTLGPLVKAVHD HHHHHCCEEEEEEECCCCCHHHHHHHHCC >Mature Secondary Structure PHTPNRREILAGAAALSAAPALLHAATPAGDPSLKGRTILITGCSSGFGRIGALHYARL CCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH GAKVIATMRGLPRPEAESLAAEAAKDKLDLDIVEIDVTSDASVASGTAKALAIAGGRIDT HHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHEEEEECCCHHH LVNNAGIGITGPVEVQDMEATQLIFDTNVFGIQRMLRALLPQMRAAKGGQVFNISSQLGR HHCCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCE VIVPGGGHYSATKFAVEALSEQMAYELVPHGIDVTVIQPGGYPTKVWVNRNAYTGALKAR EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCEECEEECC SDAALLDAYAPFTRGMGTEDGSGRSADPADVPRAIAEIMAMPAGKRPLRRAVHPGTRPQE CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHH AINRVSAEVQLAWLGGSPTLGPLVKAVHD HHHHHCCEEEEEEECCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9384377; 8396117 [H]