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The map label for this gene is rbfA

Identifier: 103486106

GI number: 103486106

Start: 624839

End: 625249

Strand: Direct

Name: rbfA

Synonym: Sala_0613

Alternate gene names: 103486106

Gene position: 624839-625249 (Clockwise)

Preceding gene: 103486105

Following gene: 103486107

Centisome position: 18.68

GC content: 63.02

Gene sequence:

>411_bases
ATGCGCCACAAGGAACAATCCGAAGGCCCCTCCGTCCGCGTGCTGCGTGTGGGCGAACAGGTGCGCCATGTGCTGAGCGA
AATCCTCGCGCGCGGCGACGTGCACGACGATGTGCTCGCGACGCATCCGGTCAGCGTGACCGAGGTGCGCATGTCTCCCG
ACCTTCGCCACGCGACGGTCTTTGTGAAGCCCCTGCTCGGCAAGGATGAGGAGGCGGTGCTGAAAGCGATGCGGACAAAC
ACCGCCTATCTTCAGCGCGAGGTCGCGCATCGTATCCGGATGAAATATGCAGCGAAACTGAAGTTCCTCGCTGACGACAG
CTTTGACGAGGCCAGCCATATCGACCGGCTGCTGCGCGATCCGAAGGTGGCGCGCGATCTGGAAGGCGGCGACGAAGGCG
ATCAGGGTTGA

Upstream 100 bases:

>100_bases
GATCACCTCGAAGTCTTCGAGGTCGAGCTGCGCGAACGCACGCTGTAGTGGAACCATCCCTGCACCCCCGCCGGCGCGGG
GGTGCAGGAGGAATTGACCG

Downstream 100 bases:

>100_bases
AGCCTGCCCGAACGGACCTGTCCGGTCGATGGACCCGAAGGCGGCGTGCATGACCGACCCCGACGCCCCCTATCACGCCC
ATGTCTATTATGATCCTGCC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MRHKEQSEGPSVRVLRVGEQVRHVLSEILARGDVHDDVLATHPVSVTEVRMSPDLRHATVFVKPLLGKDEEAVLKAMRTN
TAYLQREVAHRIRMKYAAKLKFLADDSFDEASHIDRLLRDPKVARDLEGGDEGDQG

Sequences:

>Translated_136_residues
MRHKEQSEGPSVRVLRVGEQVRHVLSEILARGDVHDDVLATHPVSVTEVRMSPDLRHATVFVKPLLGKDEEAVLKAMRTN
TAYLQREVAHRIRMKYAAKLKFLADDSFDEASHIDRLLRDPKVARDLEGGDEGDQG
>Mature_136_residues
MRHKEQSEGPSVRVLRVGEQVRHVLSEILARGDVHDDVLATHPVSVTEVRMSPDLRHATVFVKPLLGKDEEAVLKAMRTN
TAYLQREVAHRIRMKYAAKLKFLADDSFDEASHIDRLLRDPKVARDLEGGDEGDQG

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_SPHAL (Q1GVI8)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_615667.1
- ProteinModelPortal:   Q1GVI8
- GeneID:   4082549
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_0613
- NMPDR:   fig|317655.9.peg.569
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- BioCyc:   SALA317655:SALA_0613-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15347; Mature: 15347

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHKEQSEGPSVRVLRVGEQVRHVLSEILARGDVHDDVLATHPVSVTEVRMSPDLRHATV
CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCHHHHH
FVKPLLGKDEEAVLKAMRTNTAYLQREVAHRIRMKYAAKLKFLADDSFDEASHIDRLLRD
EEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
PKVARDLEGGDEGDQG
CHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRHKEQSEGPSVRVLRVGEQVRHVLSEILARGDVHDDVLATHPVSVTEVRMSPDLRHATV
CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCHHHHH
FVKPLLGKDEEAVLKAMRTNTAYLQREVAHRIRMKYAAKLKFLADDSFDEASHIDRLLRD
EEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
PKVARDLEGGDEGDQG
CHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA