Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486098
Identifier: 103486098
GI number: 103486098
Start: 614727
End: 616436
Strand: Direct
Name: 103486098
Synonym: Sala_0605
Alternate gene names: NA
Gene position: 614727-616436 (Clockwise)
Preceding gene: 103486097
Following gene: 103486102
Centisome position: 18.38
GC content: 64.04
Gene sequence:
>1710_bases ATGGACATGCAGGGCGGATTCGGCGCCGGGGATTCGACGGCGGTGCAACATGTGCGCCTGGCGGGCGGGGGTGTCGCGGC CCCGGTGACACCGGGCACCGCCCATCATCGCGACGAGTTGCTGATCGGTGAGGTTGTCGATGTCTCGGGTTCGGCGTCGC GCATCCTGCTCGACGCCGCGACAATCGCCAGACTGTCGTCGTCGGGCGATGCCACGGTCGCGATGGCGGGGCAGGTCGGC GCGCAGGTCAAGGTCCGCGTCGGCAACATATGGCTCGTCGCCAGCATCCGCGACCAGCAGTTGCACGAACGCGGCGAGGG ATTGATCCTCGCGACGATCGACTTGCTCGGCGAAGGCGAAGAGGAAAAGATTACCGGCCGCATCCACAATTTCCGTCGCG GCGTGACGCGCTACCCCGTTCCGGGAAGCCCGGTCTTTGCGGCGACCAGCGCCGATCTCAAGCAAATCTACGCCGCCGAC GAGCGCGCACATGTCGAGATCGGCACCGTCCACCCGACCAAGGATGTCCGCGGTTCGCTCTATGTCGACGCGATGCTGGG CAAGCATTTCGCGCTGCTGGGATCGACGGGTACCGGCAAGTCGACCAGCGCCGCGCTGATCCTCCACAAGATCTGCGAAC TCGCGCCGCAGGGCCATATCGTGATGATCGACCCGCACGGCGAATATTCGGCGGCGTTCAAGGGCACGGGCGCATTGTTC GACGTCGACAATCTGGCGATGCCCTATTGGCTGATGAACTTCGAGGAACATTGCGAGGTGTTCGTCACGGCCGAGGGGCG CGACCGCCAGGCCGACTGCGACGTGCTGGCGCGCTGCCTTCTCCAGGCGCGGATCAAGAACCGGCTGGCCGAAGGGATGA CCAAGATCACGGTCGATTCGCCGATTCCCTATCTGCTCTCCGACCTGCTCAGCATCCTGACCAATGAAATGGGCAAGCTC GACAAGGCGACCTCCAGCGCCCCCTTTATGCGGATCAAGGGCAAGATCGAGGAAATGCGCGCCGACCCGCGCTATAATTT CATGTTTTCGGGCATGCTCGTCGCCGACACGATGGCGAACTTCCTCAGCAAGATTTTCCGCCTGCCCTCCGATGGGCGGC CGATTTCGATCATCGACGTGTCGGGGGTGCCCAGCGACATTACCGGGGTTGTCGTCGCGGTGCTGTCGCGGCTGACCTTC GACTATGCGATCTGGTCGCGCGGCGAACCGCAGCGCCCGATCCTGCTCGTGTGCGAGGAAGCGCACCGCTACATCCCCTC GAAGGACATCGGCCAGGGACAGGCGGTGCGCAAGATTCTGGAACGTATCGCCAAGGAAGGGCGCAAATATGGCGTGTCGC TGGGTCTGATCACCCAGCGTCCGTCGGACCTTGCCGAAGGCGTGCTGTCGCAGTGCGGCACCATCATCGCGATGCGCCTC AACAACGAGCGAGACCAGCATTTCGTGAAAGCGGCGATGCCCGAAGGCGCGCGCGGCTTCATCGATTCGATCCCCGCGCT GCGCAATCGCGAGTGCATCGTCTGCGGTGAGGGCGTGTCGATCCCGATCCGCGTCTACCTCGACACGCTCGAAGAGGAAA AACGCCCGGCGTCGAGCGATCCACTCTTCTCGAAACTGTGGCGCGAAACGGGTGGCGAGGCCGAAATCGTCGAGCGCGTG GTGAAACGCTGGCGCAGTCAGGGGCGGTAG
Upstream 100 bases:
>100_bases CCGCCGTCGCTGAACCATATAGAGCACGCCGCTCTAAGCGCTTTGTTTACCCTCCTCTGCGATAGCTGAAAGCGGGACCA CAAAGGCGGGGGCAGGATTT
Downstream 100 bases:
>100_bases GCGCACCGTTTGCAGCTTTGTGTTCGCGGAAGGGCGGTTTTGGAGTGGGGAGCGGACGTAGCCCTCTCCCCTTCAGGGGA GAGGATAGCGCAGCTTGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 569; Mature: 569
Protein sequence:
>569_residues MDMQGGFGAGDSTAVQHVRLAGGGVAAPVTPGTAHHRDELLIGEVVDVSGSASRILLDAATIARLSSSGDATVAMAGQVG AQVKVRVGNIWLVASIRDQQLHERGEGLILATIDLLGEGEEEKITGRIHNFRRGVTRYPVPGSPVFAATSADLKQIYAAD ERAHVEIGTVHPTKDVRGSLYVDAMLGKHFALLGSTGTGKSTSAALILHKICELAPQGHIVMIDPHGEYSAAFKGTGALF DVDNLAMPYWLMNFEEHCEVFVTAEGRDRQADCDVLARCLLQARIKNRLAEGMTKITVDSPIPYLLSDLLSILTNEMGKL DKATSSAPFMRIKGKIEEMRADPRYNFMFSGMLVADTMANFLSKIFRLPSDGRPISIIDVSGVPSDITGVVVAVLSRLTF DYAIWSRGEPQRPILLVCEEAHRYIPSKDIGQGQAVRKILERIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL NNERDQHFVKAAMPEGARGFIDSIPALRNRECIVCGEGVSIPIRVYLDTLEEEKRPASSDPLFSKLWRETGGEAEIVERV VKRWRSQGR
Sequences:
>Translated_569_residues MDMQGGFGAGDSTAVQHVRLAGGGVAAPVTPGTAHHRDELLIGEVVDVSGSASRILLDAATIARLSSSGDATVAMAGQVG AQVKVRVGNIWLVASIRDQQLHERGEGLILATIDLLGEGEEEKITGRIHNFRRGVTRYPVPGSPVFAATSADLKQIYAAD ERAHVEIGTVHPTKDVRGSLYVDAMLGKHFALLGSTGTGKSTSAALILHKICELAPQGHIVMIDPHGEYSAAFKGTGALF DVDNLAMPYWLMNFEEHCEVFVTAEGRDRQADCDVLARCLLQARIKNRLAEGMTKITVDSPIPYLLSDLLSILTNEMGKL DKATSSAPFMRIKGKIEEMRADPRYNFMFSGMLVADTMANFLSKIFRLPSDGRPISIIDVSGVPSDITGVVVAVLSRLTF DYAIWSRGEPQRPILLVCEEAHRYIPSKDIGQGQAVRKILERIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL NNERDQHFVKAAMPEGARGFIDSIPALRNRECIVCGEGVSIPIRVYLDTLEEEKRPASSDPLFSKLWRETGGEAEIVERV VKRWRSQGR >Mature_569_residues MDMQGGFGAGDSTAVQHVRLAGGGVAAPVTPGTAHHRDELLIGEVVDVSGSASRILLDAATIARLSSSGDATVAMAGQVG AQVKVRVGNIWLVASIRDQQLHERGEGLILATIDLLGEGEEEKITGRIHNFRRGVTRYPVPGSPVFAATSADLKQIYAAD ERAHVEIGTVHPTKDVRGSLYVDAMLGKHFALLGSTGTGKSTSAALILHKICELAPQGHIVMIDPHGEYSAAFKGTGALF DVDNLAMPYWLMNFEEHCEVFVTAEGRDRQADCDVLARCLLQARIKNRLAEGMTKITVDSPIPYLLSDLLSILTNEMGKL DKATSSAPFMRIKGKIEEMRADPRYNFMFSGMLVADTMANFLSKIFRLPSDGRPISIIDVSGVPSDITGVVVAVLSRLTF DYAIWSRGEPQRPILLVCEEAHRYIPSKDIGQGQAVRKILERIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL NNERDQHFVKAAMPEGARGFIDSIPALRNRECIVCGEGVSIPIRVYLDTLEEEKRPASSDPLFSKLWRETGGEAEIVERV VKRWRSQGR
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJECL08 and MJ1429 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008571 - InterPro: IPR002789 - InterPro: IPR018538 [H]
Pfam domain/function: PF05872 DUF853; PF01935 DUF87; PF09378 HAS-barrel [H]
EC number: NA
Molecular weight: Translated: 61922; Mature: 61922
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMQGGFGAGDSTAVQHVRLAGGGVAAPVTPGTAHHRDELLIGEVVDVSGSASRILLDAA CCCCCCCCCCCHHHHHEEEECCCCEECCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEHH TIARLSSSGDATVAMAGQVGAQVKVRVGNIWLVASIRDQQLHERGEGLILATIDLLGEGE HHHHHCCCCCEEEEEECCCCCEEEEEECCEEEEEECCHHHHHHHCCEEEEEEEEECCCCC EEKITGRIHNFRRGVTRYPVPGSPVFAATSADLKQIYAADERAHVEIGTVHPTKDVRGSL HHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCEEEEECCCCCCCCCCCE YVDAMLGKHFALLGSTGTGKSTSAALILHKICELAPQGHIVMIDPHGEYSAAFKGTGALF EEEHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEECCCCCEE DVDNLAMPYWLMNFEEHCEVFVTAEGRDRQADCDVLARCLLQARIKNRLAEGMTKITVDS ECCCCCCCHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC PIPYLLSDLLSILTNEMGKLDKATSSAPFMRIKGKIEEMRADPRYNFMFSGMLVADTMAN CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCCCCEEEECCHHHHHHHHH FLSKIFRLPSDGRPISIIDVSGVPSDITGVVVAVLSRLTFDYAIWSRGEPQRPILLVCEE HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEH AHRYIPSKDIGQGQAVRKILERIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL HHHCCCCCCCCCCHHHHHHHHHHHHCCHHHCEEEEEEECCCHHHHHHHHHCCCEEEEEEE NNERDQHFVKAAMPEGARGFIDSIPALRNRECIVCGEGVSIPIRVYLDTLEEEKRPASSD CCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEHHHHHCCCCCCC PLFSKLWRETGGEAEIVERVVKRWRSQGR HHHHHHHHHCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDMQGGFGAGDSTAVQHVRLAGGGVAAPVTPGTAHHRDELLIGEVVDVSGSASRILLDAA CCCCCCCCCCCHHHHHEEEECCCCEECCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEHH TIARLSSSGDATVAMAGQVGAQVKVRVGNIWLVASIRDQQLHERGEGLILATIDLLGEGE HHHHHCCCCCEEEEEECCCCCEEEEEECCEEEEEECCHHHHHHHCCEEEEEEEEECCCCC EEKITGRIHNFRRGVTRYPVPGSPVFAATSADLKQIYAADERAHVEIGTVHPTKDVRGSL HHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCEEEEECCCCCCCCCCCE YVDAMLGKHFALLGSTGTGKSTSAALILHKICELAPQGHIVMIDPHGEYSAAFKGTGALF EEEHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEECCCCCEE DVDNLAMPYWLMNFEEHCEVFVTAEGRDRQADCDVLARCLLQARIKNRLAEGMTKITVDS ECCCCCCCHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC PIPYLLSDLLSILTNEMGKLDKATSSAPFMRIKGKIEEMRADPRYNFMFSGMLVADTMAN CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCCCCEEEECCHHHHHHHHH FLSKIFRLPSDGRPISIIDVSGVPSDITGVVVAVLSRLTFDYAIWSRGEPQRPILLVCEE HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEH AHRYIPSKDIGQGQAVRKILERIAKEGRKYGVSLGLITQRPSDLAEGVLSQCGTIIAMRL HHHCCCCCCCCCCHHHHHHHHHHHHCCHHHCEEEEEEECCCHHHHHHHHHCCCEEEEEEE NNERDQHFVKAAMPEGARGFIDSIPALRNRECIVCGEGVSIPIRVYLDTLEEEKRPASSD CCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEHHHHHCCCCCCC PLFSKLWRETGGEAEIVERVVKRWRSQGR HHHHHHHHHCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]