Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is ald [H]
Identifier: 103486051
GI number: 103486051
Start: 572566
End: 573681
Strand: Direct
Name: ald [H]
Synonym: Sala_0558
Alternate gene names: 103486051
Gene position: 572566-573681 (Clockwise)
Preceding gene: 103486046
Following gene: 103486052
Centisome position: 17.12
GC content: 65.86
Gene sequence:
>1116_bases ATGATCATCGGCACCCCCAAGGAAATCAAGAATCACGAATATCGCGTCGGGCTGACCCCCGAAAGCGCGCGCGAGCTCGT CGTCCACGGACACCGCGTGCTGGTCGAAACCGGCGCGGGTGAGGGGATTGGCGCACACGACCGCTACTATGTCGAAGCGG GCGCCGAGATCGTCCAGAGCGCCGATGATATTTTTGCGGGCGCCGACATGGTCGTGAAGGTCAAGGAGCCGCAGCCGGTC GAGCGCGCGATGCTGCGCGAGGGACAGATCCTCTATACCTATCTTCACCTTGCCCCCGACCCCGACCAGACGCGCGACCT GATGAAGTCGGGCGCGGTGTGCATCGCTTATGAAACGGTCACGAGCCCGCACGGCGGCCTGCCGCTCCTGAAGCCGATGA GCCAGGTTGCGGGGCGCATGTCGATCCAGGCGGGGGCGACCGCGCTTGAAAAGGCGCACGGTGGCCGCGGCGTACTATTG GGCGGCGTCCCCGGCGTCGCGCCGGGCAAGGTGTGCGTGATCGGCGGCGGGGTCGTCGGCTTCAACGCCGCGCAGATGGC GGCGGGGCTCGGCGCCGACGTCACCATCCTCGACCGCGATCCCGAAGTGCTCGAGCGCGTCGGCACCTTTTTCGAAGCGC GGGCGAAGACGCGCTTCTCGAATCGCGCGAACCTTGCCGAATGCGTCGCCGAGGCCGATCTGGTGATCGGCGCCGTGCTG ATCCCCGGCGCCGAGGCGCCCAAGCTCGTCAACCGCGAGATGCTCGGCACGATGCGCCCCGGCTCGGTGCTCGTCGACGT CGCGATCGATCAGGGCGGCTGTTTCGAAACCAGCCATGCGACCACCCATGCCGACCCGACCTATGTGATCGACGGCATCG TCCATTATGCGGTCGCGAACATGCCGGGCGCGGTCGCGCGCACCAGCACCTATGCGCTCAACAACGTCACCCTGCCGCAC GCGCTGCGCATCGCCGACCTGGGCTGGAAAGAGGCATTGCGCCGCGATCCGCATCTTTTGCAGGGTTTGAACGTATGGAA TGGTAAGGTGACGTTCGAAGCCGTAGCGGAAGCGATCGGAACCGATTATGTGCCTGTCGAACAGGCACTCGACTGA
Upstream 100 bases:
>100_bases GGATCATATGCAAGCACCTCGCGGCGCTTTGCTGCTATTCTCGTCTGATCGCTCCGCGTGCCGGCCGGGCGCGCTGCGGG CGAGGATATTGGAGAGCAAG
Downstream 100 bases:
>100_bases CGACAAGGACCATGAAGCCAGATGACCGACCAAGCCCCGCCGCCCGCCGACGACGAAGCCCAGGAAAATGAAGTGCTGCG CGCCGCGCGCGAGCTGCAAC
Product: alanine dehydrogenase
Products: NA
Alternate protein names: Stage V sporulation protein N [H]
Number of amino acids: Translated: 371; Mature: 371
Protein sequence:
>371_residues MIIGTPKEIKNHEYRVGLTPESARELVVHGHRVLVETGAGEGIGAHDRYYVEAGAEIVQSADDIFAGADMVVKVKEPQPV ERAMLREGQILYTYLHLAPDPDQTRDLMKSGAVCIAYETVTSPHGGLPLLKPMSQVAGRMSIQAGATALEKAHGGRGVLL GGVPGVAPGKVCVIGGGVVGFNAAQMAAGLGADVTILDRDPEVLERVGTFFEARAKTRFSNRANLAECVAEADLVIGAVL IPGAEAPKLVNREMLGTMRPGSVLVDVAIDQGGCFETSHATTHADPTYVIDGIVHYAVANMPGAVARTSTYALNNVTLPH ALRIADLGWKEALRRDPHLLQGLNVWNGKVTFEAVAEAIGTDYVPVEQALD
Sequences:
>Translated_371_residues MIIGTPKEIKNHEYRVGLTPESARELVVHGHRVLVETGAGEGIGAHDRYYVEAGAEIVQSADDIFAGADMVVKVKEPQPV ERAMLREGQILYTYLHLAPDPDQTRDLMKSGAVCIAYETVTSPHGGLPLLKPMSQVAGRMSIQAGATALEKAHGGRGVLL GGVPGVAPGKVCVIGGGVVGFNAAQMAAGLGADVTILDRDPEVLERVGTFFEARAKTRFSNRANLAECVAEADLVIGAVL IPGAEAPKLVNREMLGTMRPGSVLVDVAIDQGGCFETSHATTHADPTYVIDGIVHYAVANMPGAVARTSTYALNNVTLPH ALRIADLGWKEALRRDPHLLQGLNVWNGKVTFEAVAEAIGTDYVPVEQALD >Mature_371_residues MIIGTPKEIKNHEYRVGLTPESARELVVHGHRVLVETGAGEGIGAHDRYYVEAGAEIVQSADDIFAGADMVVKVKEPQPV ERAMLREGQILYTYLHLAPDPDQTRDLMKSGAVCIAYETVTSPHGGLPLLKPMSQVAGRMSIQAGATALEKAHGGRGVLL GGVPGVAPGKVCVIGGGVVGFNAAQMAAGLGADVTILDRDPEVLERVGTFFEARAKTRFSNRANLAECVAEADLVIGAVL IPGAEAPKLVNREMLGTMRPGSVLVDVAIDQGGCFETSHATTHADPTYVIDGIVHYAVANMPGAVARTSTYALNNVTLPH ALRIADLGWKEALRRDPHLLQGLNVWNGKVTFEAVAEAIGTDYVPVEQALD
Specific function: This enzyme is a key factor in the assimilation of L- alanine as an energy source through the tricarboxylic acid cycle during sporulation [H]
COG id: COG0686
COG function: function code E; Alanine dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AlaDH/PNT family [H]
Homologues:
Organism=Homo sapiens, GI122939155, Length=346, Percent_Identity=31.7919075144509, Blast_Score=143, Evalue=2e-34, Organism=Homo sapiens, GI122939153, Length=346, Percent_Identity=31.7919075144509, Blast_Score=143, Evalue=2e-34, Organism=Escherichia coli, GI1787887, Length=346, Percent_Identity=31.5028901734104, Blast_Score=135, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17550456, Length=335, Percent_Identity=29.8507462686567, Blast_Score=122, Evalue=3e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007698 - InterPro: IPR008142 - InterPro: IPR008143 - InterPro: IPR007886 - InterPro: IPR008141 [H]
Pfam domain/function: PF01262 AlaDh_PNT_C; PF05222 AlaDh_PNT_N [H]
EC number: =1.4.1.1 [H]
Molecular weight: Translated: 39260; Mature: 39260
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: PS00837 ALADH_PNT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIGTPKEIKNHEYRVGLTPESARELVVHGHRVLVETGAGEGIGAHDRYYVEAGAEIVQS CCCCCCHHHCCCCEEEECCCHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHH ADDIFAGADMVVKVKEPQPVERAMLREGQILYTYLHLAPDPDQTRDLMKSGAVCIAYETV HHHHHCCCCEEEEECCCCHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCEEEEEEEE TSPHGGLPLLKPMSQVAGRMSIQAGATALEKAHGGRGVLLGGVPGVAPGKVCVIGGGVVG CCCCCCCCHHHHHHHHHHCEEHHHCHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCEEC FNAAQMAAGLGADVTILDRDPEVLERVGTFFEARAKTRFSNRANLAECVAEADLVIGAVL CCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEE IPGAEAPKLVNREMLGTMRPGSVLVDVAIDQGGCFETSHATTHADPTYVIDGIVHYAVAN ECCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHC MPGAVARTSTYALNNVTLPHALRIADLGWKEALRRDPHLLQGLNVWNGKVTFEAVAEAIG CCCCHHHCCEEEECCCCCCHHEEEECCCHHHHHCCCCHHHHCCCCCCCEEEHHHHHHHHC TDYVPVEQALD CCCCCHHHHCC >Mature Secondary Structure MIIGTPKEIKNHEYRVGLTPESARELVVHGHRVLVETGAGEGIGAHDRYYVEAGAEIVQS CCCCCCHHHCCCCEEEECCCHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHH ADDIFAGADMVVKVKEPQPVERAMLREGQILYTYLHLAPDPDQTRDLMKSGAVCIAYETV HHHHHCCCCEEEEECCCCHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCEEEEEEEE TSPHGGLPLLKPMSQVAGRMSIQAGATALEKAHGGRGVLLGGVPGVAPGKVCVIGGGVVG CCCCCCCCHHHHHHHHHHCEEHHHCHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCEEC FNAAQMAAGLGADVTILDRDPEVLERVGTFFEARAKTRFSNRANLAECVAEADLVIGAVL CCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEE IPGAEAPKLVNREMLGTMRPGSVLVDVAIDQGGCFETSHATTHADPTYVIDGIVHYAVAN ECCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHC MPGAVARTSTYALNNVTLPHALRIADLGWKEALRRDPHLLQGLNVWNGKVTFEAVAEAIG CCCCHHHCCEEEECCCCCCHHEEEECCCHHHHHCCCCHHHHCCCCCCCEEEHHHHHHHHC TDYVPVEQALD CCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8226620; 9384377 [H]