Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485954
Identifier: 103485954
GI number: 103485954
Start: 472246
End: 473724
Strand: Direct
Name: 103485954
Synonym: Sala_0461
Alternate gene names: NA
Gene position: 472246-473724 (Clockwise)
Preceding gene: 103485952
Following gene: 103485956
Centisome position: 14.12
GC content: 69.71
Gene sequence:
>1479_bases GTGAAGACCAGCATCGAGATCGGAACCGACGCGGCGGGGCAGGATGTGCGTATCGACGTGCAGGAATTGCTCGCGACGCG CCTGCTCGTCCAGGGCAATTCGGGGTCGGGCAAGTCGCACCTGTTGCGCCGCATCCTCGAGGAAAGCGCGGCGCTGGTGC AGCAGATCGTGATCGATCCCGAGGGCGATTTCGTGACGCTCGCCGACGCCTTCAGCCATGTCGTCATCAACGGCGGCGAT TATGACGAGCGCGAGATTGCGGCGATGGGCGCGCGCATCCGCGAACATCGTGCGTCGATCGTGCTCAGCCTCGAATCGCT CGACATCGAGGCGCAGATGACCTGCGCCGCGGCGTTTCTCAACGCGCTGTTCGACGCGCCGCGCGAACATTGGTTTCCCG CGCTGGTGGTGGTCGACGAGGCGCAGATGTTCGCGCCGTCGGCGTCGGGCGATGTGTCCGACACCGTGCGCCGCGCGAGC CTGTCCGCGATGACCAACCTGATGTGCCGGGGGCGGAAACGGGGGCTGGCGGGCGCGATCGCGACACAGCGGCTGGCGAA GCTCGCCAAGAATGTCGCCGCCGAGGCGAGCAATTTCCTGATGGGGCGCACCTTCCTCGACATCGACATGGCGCGCGCCG CCGACCTGCTCGGCATGGAGCGGCGGCAGGCCGAGGCGATCCGCGATCTGGAGCGCGGGCATTTCCTGGGGCTGGGCCCC GCGATCTCGCGCCGCCCGCTGGCGATCCGCATCGGCGCGACGCGCACGGCGACGCGGATGGGGACGCACAGTCTGATGCC GCTGCCGGTCGCGGACGGCGCCGACATGCGCTCGATGCTCTTTGCCGAGGAGGAGGCGCCCGCCGCGCCGCGTGCTGTCG CGGTCGAACCCGAACCCGAACCCGTCGCGGCGGGCGAGCTGCTCGAACGGATCGCGGCGAGCGAACCGCTGCACGCCGAT GCCGCTGCGCCGCCCGTGCTCGACATCGTCGAAGCGGCGGCGGAGGCCGAGGAGGCCGACGCGGTGGTGATCGCGACTTT GCAGGCGATGCTGGACGATCCCGACAGCGGCTTCCAGAGCGAGGCGATGCTGTTTCAGGATTTTTCGGTGCGCTGCCGGA TGGCGAAGCTTCGGAAGGTGCCGCTCGACCTTGCCGCCTTTCGCCGCCGCTTCGCGTTGGCGAAGGGCGGCGTGTTCGAC CCCTCCGAGCCGCGGTGGCGGGGCGCGCTCGCCGTCGCTGACCGCCTGCCCGACGATATGGTCGCGCCCTTCCTGCAGAT CGCGCGCGCCGCGATGGAGGGCGCGCCGTGCCCCGACGACGAGGCGCTTGGCCGCGCCTATGGCAGCCGTTCGCCAGGGC GCATCCGGCGCCTGATCGACTATATGGAAAAACAGGGGGCGATTGTTGTGCGCGCCGACTTCGGCGGGCGGCGGTCGATC GGGATTCCCGAACTGGGGCTCAGCACCGAGGCGGAATAG
Upstream 100 bases:
>100_bases TGGGCGGTTCGGGACGAATGGCAAGGCGGGCCGTAAAAATCCGGCCGCCCGCCGCGTCACCCGGTTGTCATCCGCCGGGG CGCCCGATAGGGCGGCGGCC
Downstream 100 bases:
>100_bases CGCCGCGTGCCAAATCCGACCTATCCTGCCGCTCGCATCGAGCGACGTCGAGATGCCCCTCGATCCTGTGCCGTTCCGAG GGGTGTCTCGACTTCGCTCG
Product: ATPase
Products: NA
Alternate protein names: AAA ATPase; ATPase-Like Protein; GMP Reductase
Number of amino acids: Translated: 492; Mature: 492
Protein sequence:
>492_residues MKTSIEIGTDAAGQDVRIDVQELLATRLLVQGNSGSGKSHLLRRILEESAALVQQIVIDPEGDFVTLADAFSHVVINGGD YDEREIAAMGARIREHRASIVLSLESLDIEAQMTCAAAFLNALFDAPREHWFPALVVVDEAQMFAPSASGDVSDTVRRAS LSAMTNLMCRGRKRGLAGAIATQRLAKLAKNVAAEASNFLMGRTFLDIDMARAADLLGMERRQAEAIRDLERGHFLGLGP AISRRPLAIRIGATRTATRMGTHSLMPLPVADGADMRSMLFAEEEAPAAPRAVAVEPEPEPVAAGELLERIAASEPLHAD AAAPPVLDIVEAAAEAEEADAVVIATLQAMLDDPDSGFQSEAMLFQDFSVRCRMAKLRKVPLDLAAFRRRFALAKGGVFD PSEPRWRGALAVADRLPDDMVAPFLQIARAAMEGAPCPDDEALGRAYGSRSPGRIRRLIDYMEKQGAIVVRADFGGRRSI GIPELGLSTEAE
Sequences:
>Translated_492_residues MKTSIEIGTDAAGQDVRIDVQELLATRLLVQGNSGSGKSHLLRRILEESAALVQQIVIDPEGDFVTLADAFSHVVINGGD YDEREIAAMGARIREHRASIVLSLESLDIEAQMTCAAAFLNALFDAPREHWFPALVVVDEAQMFAPSASGDVSDTVRRAS LSAMTNLMCRGRKRGLAGAIATQRLAKLAKNVAAEASNFLMGRTFLDIDMARAADLLGMERRQAEAIRDLERGHFLGLGP AISRRPLAIRIGATRTATRMGTHSLMPLPVADGADMRSMLFAEEEAPAAPRAVAVEPEPEPVAAGELLERIAASEPLHAD AAAPPVLDIVEAAAEAEEADAVVIATLQAMLDDPDSGFQSEAMLFQDFSVRCRMAKLRKVPLDLAAFRRRFALAKGGVFD PSEPRWRGALAVADRLPDDMVAPFLQIARAAMEGAPCPDDEALGRAYGSRSPGRIRRLIDYMEKQGAIVVRADFGGRRSI GIPELGLSTEAE >Mature_492_residues MKTSIEIGTDAAGQDVRIDVQELLATRLLVQGNSGSGKSHLLRRILEESAALVQQIVIDPEGDFVTLADAFSHVVINGGD YDEREIAAMGARIREHRASIVLSLESLDIEAQMTCAAAFLNALFDAPREHWFPALVVVDEAQMFAPSASGDVSDTVRRAS LSAMTNLMCRGRKRGLAGAIATQRLAKLAKNVAAEASNFLMGRTFLDIDMARAADLLGMERRQAEAIRDLERGHFLGLGP AISRRPLAIRIGATRTATRMGTHSLMPLPVADGADMRSMLFAEEEAPAAPRAVAVEPEPEPVAAGELLERIAASEPLHAD AAAPPVLDIVEAAAEAEEADAVVIATLQAMLDDPDSGFQSEAMLFQDFSVRCRMAKLRKVPLDLAAFRRRFALAKGGVFD PSEPRWRGALAVADRLPDDMVAPFLQIARAAMEGAPCPDDEALGRAYGSRSPGRIRRLIDYMEKQGAIVVRADFGGRRSI GIPELGLSTEAE
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52923; Mature: 52923
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSIEIGTDAAGQDVRIDVQELLATRLLVQGNSGSGKSHLLRRILEESAALVQQIVIDP CCCCEECCCCCCCCCEEEEHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC EGDFVTLADAFSHVVINGGDYDEREIAAMGARIREHRASIVLSLESLDIEAQMTCAAAFL CCCEEEHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHEEEEEHHCCCHHHHHHHHHHH NALFDAPREHWFPALVVVDEAQMFAPSASGDVSDTVRRASLSAMTNLMCRGRKRGLAGAI HHHHHCCHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH ATQRLAKLAKNVAAEASNFLMGRTFLDIDMARAADLLGMERRQAEAIRDLERGHFLGLGP HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC AISRRPLAIRIGATRTATRMGTHSLMPLPVADGADMRSMLFAEEEAPAAPRAVAVEPEPE CCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCC PVAAGELLERIAASEPLHADAAAPPVLDIVEAAAEAEEADAVVIATLQAMLDDPDSGFQS CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHH EAMLFQDFSVRCRMAKLRKVPLDLAAFRRRFALAKGGVFDPSEPRWRGALAVADRLPDDM HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHH VAPFLQIARAAMEGAPCPDDEALGRAYGSRSPGRIRRLIDYMEKQGAIVVRADFGGRRSI HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC GIPELGLSTEAE CCCCCCCCCCCC >Mature Secondary Structure MKTSIEIGTDAAGQDVRIDVQELLATRLLVQGNSGSGKSHLLRRILEESAALVQQIVIDP CCCCEECCCCCCCCCEEEEHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC EGDFVTLADAFSHVVINGGDYDEREIAAMGARIREHRASIVLSLESLDIEAQMTCAAAFL CCCEEEHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHEEEEEHHCCCHHHHHHHHHHH NALFDAPREHWFPALVVVDEAQMFAPSASGDVSDTVRRASLSAMTNLMCRGRKRGLAGAI HHHHHCCHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH ATQRLAKLAKNVAAEASNFLMGRTFLDIDMARAADLLGMERRQAEAIRDLERGHFLGLGP HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC AISRRPLAIRIGATRTATRMGTHSLMPLPVADGADMRSMLFAEEEAPAAPRAVAVEPEPE CCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCC PVAAGELLERIAASEPLHADAAAPPVLDIVEAAAEAEEADAVVIATLQAMLDDPDSGFQS CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHH EAMLFQDFSVRCRMAKLRKVPLDLAAFRRRFALAKGGVFDPSEPRWRGALAVADRLPDDM HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHH VAPFLQIARAAMEGAPCPDDEALGRAYGSRSPGRIRRLIDYMEKQGAIVVRADFGGRRSI HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC GIPELGLSTEAE CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA