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The map label for this gene is yagA [C]

Identifier: 103485876

GI number: 103485876

Start: 393767

End: 394336

Strand: Direct

Name: yagA [C]

Synonym: Sala_0381

Alternate gene names: 103485876

Gene position: 393767-394336 (Clockwise)

Preceding gene: 103485874

Following gene: 103485877

Centisome position: 11.77

GC content: 63.51

Gene sequence:

>570_bases
TTGCCGAACCAGCGCTGGAGCCTGGACTTCGTGCACGACCAGATGGCATCCGGCAGGCGGTTCCGGGTGCTCAACGTGGT
CGATGACGTGACGAGGGAGTGCCTGGCAGCGGTGCCGGACACGTCGATCTCTGGGCGCCGTGTCGTGCGCGAGCTGACCG
CGCTGATCGAACGGCGTGGCAAGCCCGGCATGATCGTCAGCGACAATGGGACGGAACTCACCAGCAACGCCGTACTGGCA
TGGTGCGGCGAGATCGGCGTCGAGTGGCATTACATCGCGCCCGGAAGGCCGATGCAGAATGGCTATGTCGAGAGCTTCAA
TGGCCGGATGCGGGACGAGCTTCTCAACGAGACGTTGTTCCTGAGCATGGCTCACGCCCGGGTCGAGATCGCTGCTTGGG
TGGATGACTACAACCGGGAGAGACCGCACTCATCGCTTGGCTACGCAACACCGGCGGCGTTCGCCGCCGAACTGGATAAG
CAATGGCCTGCTTCGCTACGCCCTACGGGCTCCGCTACGCAGCCCATTGCTTCAACCGCGCTGATGCGCAAAACAACCGC
CCGGCTCTAA

Upstream 100 bases:

>100_bases
TGTATAAAGACGCTTTCTGCTCCAAGAGATCCAGATACTCAGGCGACGACGAAGCCGCAAGCGTGCTGTCGGCACAAGAG
CGCCTGCTCCGGTTCTGGCG

Downstream 100 bases:

>100_bases
TCCCAGCTGGGGGAAGGCTGGGGGTCACGACACCTTGCAACGCTCGCGCAGTTGGGGATGGTGGACCGGCGCTGAGATCC
AAGACGGGATAAACTCGCGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MPNQRWSLDFVHDQMASGRRFRVLNVVDDVTRECLAAVPDTSISGRRVVRELTALIERRGKPGMIVSDNGTELTSNAVLA
WCGEIGVEWHYIAPGRPMQNGYVESFNGRMRDELLNETLFLSMAHARVEIAAWVDDYNRERPHSSLGYATPAAFAAELDK
QWPASLRPTGSATQPIASTALMRKTTARL

Sequences:

>Translated_189_residues
MPNQRWSLDFVHDQMASGRRFRVLNVVDDVTRECLAAVPDTSISGRRVVRELTALIERRGKPGMIVSDNGTELTSNAVLA
WCGEIGVEWHYIAPGRPMQNGYVESFNGRMRDELLNETLFLSMAHARVEIAAWVDDYNRERPHSSLGYATPAAFAAELDK
QWPASLRPTGSATQPIASTALMRKTTARL
>Mature_188_residues
PNQRWSLDFVHDQMASGRRFRVLNVVDDVTRECLAAVPDTSISGRRVVRELTALIERRGKPGMIVSDNGTELTSNAVLAW
CGEIGVEWHYIAPGRPMQNGYVESFNGRMRDELLNETLFLSMAHARVEIAAWVDDYNRERPHSSLGYATPAAFAAELDKQ
WPASLRPTGSATQPIASTALMRKTTARL

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=186, Percent_Identity=26.8817204301075, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 21101; Mature: 20970

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNQRWSLDFVHDQMASGRRFRVLNVVDDVTRECLAAVPDTSISGRRVVRELTALIERRG
CCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
KPGMIVSDNGTELTSNAVLAWCGEIGVEWHYIAPGRPMQNGYVESFNGRMRDELLNETLF
CCCEEECCCCCEEHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHH
LSMAHARVEIAAWVDDYNRERPHSSLGYATPAAFAAELDKQWPASLRPTGSATQPIASTA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
LMRKTTARL
HHHHHHHCC
>Mature Secondary Structure 
PNQRWSLDFVHDQMASGRRFRVLNVVDDVTRECLAAVPDTSISGRRVVRELTALIERRG
CCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
KPGMIVSDNGTELTSNAVLAWCGEIGVEWHYIAPGRPMQNGYVESFNGRMRDELLNETLF
CCCEEECCCCCEEHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHH
LSMAHARVEIAAWVDDYNRERPHSSLGYATPAAFAAELDKQWPASLRPTGSATQPIASTA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
LMRKTTARL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]