Definition | Sphingopyxis alaskensis RB2256, complete genome. |
---|---|
Accession | NC_008048 |
Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485872
Identifier: 103485872
GI number: 103485872
Start: 388838
End: 389599
Strand: Direct
Name: 103485872
Synonym: Sala_0377
Alternate gene names: NA
Gene position: 388838-389599 (Clockwise)
Preceding gene: 103485871
Following gene: 103485873
Centisome position: 11.62
GC content: 69.16
Gene sequence:
>762_bases ATGCCGCTCGGGGGGGTTCAGCAATGGATCGAGGCCGAGCGTGCGCGTCCGCCCGCGCCGACGCGCGCCTGGTACTGGAC GCTGGCGCTCGGCATCGCGGTGCTGGTGTTCGGGGCGTGGCTGACGCAGATTTTCCCGCAGCAGGGCCATGCGATCGCGC CGGGCTATGGGGCGCCGGTGCTCGCCTTGGAGTTCGCCGGCGGGCAGGACGATCTCGAGGCGATTTTCGGGGTCGAAAGC GATCCGCAGCAGGTCGCGCGCCTCGCGGCGATGCGCACGGGGAACGAGCGCGACTATCTTTACATGTTGCTTTACGCGGG CTTCCTTGCCTGCGGCTGTTTTGCGCTGTGGCGCGAGCTTCGCGCGCGCGCTTTGCTGGCCGCGACGATGCTTCCCGCAG CTGCGGCGCTCTGCGATGCCTATGAAAACTGGCTGCTTTTCGATATCCAGGCGGCCTTTACCGCGGGCGATTATTCGCCC GCGATGGCCAGCCTGCCCTATCCGGTCGCGGCGAAGTTCCTGCTGCTCGCGCTGACCAATGTCGTCATCGGCGCCGCGGC GACGCAGTTCGGGCGCTGGTGGGCGCTGTTCGGGACGCTCGCGATCCTGGCCGCGATCCCGACGGTAATGGCGATCATCA CTCCCGCCGCCTTTGCGTGGATGCTGATCCCGTCGGCGGCGGGCGGATGGCTGTTGTTGCTCGCGCTCGCGGCGGCGGGA AGCTGGCGGGCGATCGCGCGCGGGCAGCCGCTGGCCGGCTGA
Upstream 100 bases:
>100_bases GAAAAGACGGGTTTCGCCGCCGAACGCCCGGTGATCGAAGTGCGCGGTAAATGCGCCGAGTGCCAATAGGGTGAAGCGCG CCGTGTCGCCGGACGGTTGA
Downstream 100 bases:
>100_bases CGGTCGTGCTCGCAATCCGGTGCGACATCGCCTATATCGGTGATCATGTATGATTATGTCACCATAACCGCCGACGATGC GACCGCCCCGGCGCGCGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MPLGGVQQWIEAERARPPAPTRAWYWTLALGIAVLVFGAWLTQIFPQQGHAIAPGYGAPVLALEFAGGQDDLEAIFGVES DPQQVARLAAMRTGNERDYLYMLLYAGFLACGCFALWRELRARALLAATMLPAAAALCDAYENWLLFDIQAAFTAGDYSP AMASLPYPVAAKFLLLALTNVVIGAAATQFGRWWALFGTLAILAAIPTVMAIITPAAFAWMLIPSAAGGWLLLLALAAAG SWRAIARGQPLAG
Sequences:
>Translated_253_residues MPLGGVQQWIEAERARPPAPTRAWYWTLALGIAVLVFGAWLTQIFPQQGHAIAPGYGAPVLALEFAGGQDDLEAIFGVES DPQQVARLAAMRTGNERDYLYMLLYAGFLACGCFALWRELRARALLAATMLPAAAALCDAYENWLLFDIQAAFTAGDYSP AMASLPYPVAAKFLLLALTNVVIGAAATQFGRWWALFGTLAILAAIPTVMAIITPAAFAWMLIPSAAGGWLLLLALAAAG SWRAIARGQPLAG >Mature_252_residues PLGGVQQWIEAERARPPAPTRAWYWTLALGIAVLVFGAWLTQIFPQQGHAIAPGYGAPVLALEFAGGQDDLEAIFGVESD PQQVARLAAMRTGNERDYLYMLLYAGFLACGCFALWRELRARALLAATMLPAAAALCDAYENWLLFDIQAAFTAGDYSPA MASLPYPVAAKFLLLALTNVVIGAAATQFGRWWALFGTLAILAAIPTVMAIITPAAFAWMLIPSAAGGWLLLLALAAAGS WRAIARGQPLAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26969; Mature: 26838
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLGGVQQWIEAERARPPAPTRAWYWTLALGIAVLVFGAWLTQIFPQQGHAIAPGYGAPV CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCE LALEFAGGQDDLEAIFGVESDPQQVARLAAMRTGNERDYLYMLLYAGFLACGCFALWREL EEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH RARALLAATMLPAAAALCDAYENWLLFDIQAAFTAGDYSPAMASLPYPVAAKFLLLALTN HHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHH VVIGAAATQFGRWWALFGTLAILAAIPTVMAIITPAAFAWMLIPSAAGGWLLLLALAAAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC SWRAIARGQPLAG CCHHHHCCCCCCC >Mature Secondary Structure PLGGVQQWIEAERARPPAPTRAWYWTLALGIAVLVFGAWLTQIFPQQGHAIAPGYGAPV CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCE LALEFAGGQDDLEAIFGVESDPQQVARLAAMRTGNERDYLYMLLYAGFLACGCFALWREL EEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH RARALLAATMLPAAAALCDAYENWLLFDIQAAFTAGDYSPAMASLPYPVAAKFLLLALTN HHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHH VVIGAAATQFGRWWALFGTLAILAAIPTVMAIITPAAFAWMLIPSAAGGWLLLLALAAAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC SWRAIARGQPLAG CCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA