Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is zur [C]
Identifier: 103485871
GI number: 103485871
Start: 388342
End: 388806
Strand: Direct
Name: zur [C]
Synonym: Sala_0376
Alternate gene names: 103485871
Gene position: 388342-388806 (Clockwise)
Preceding gene: 103485870
Following gene: 103485872
Centisome position: 11.61
GC content: 66.24
Gene sequence:
>465_bases ATGGGCAAGCATGACCATCCGCACGTCGAAGCCAGCGGCGCCTCGCTCGCCAGGGCGGCGCAGGCCGCGCTCGAAGGCGC GGGCGAAGCGTGGACCGACATGCGCGCCGAGATTTTCGACGCAGTCGCCGCGATCGGCAAGCCCGCGAGCGCTTATGAGA TCGCCGACATCGTCTCGCAAAAGCGCGGGAAGCGCGTCGCGCCGAACAGCGTCTATCGCATTCTCGACCTGTTCGTCGCG AACAACCTCGTCCGCCGGGTCGAGAGCGCTAACGCCTTTGTCGCCAACAGCCATCCCGGCTGCCTGCACGACTGCATCTT TCTGATCTGCGATACGTGCGGCACCGCGGTGCATGTCGATGACGACACGCTGTCGACCGGGGTGCGCGCCGCCGCCGAAA AGACGGGTTTCGCCGCCGAACGCCCGGTGATCGAAGTGCGCGGTAAATGCGCCGAGTGCCAATAG
Upstream 100 bases:
>100_bases CCGGCGCCAAAGCGGATCGGTCCGCCGCTTGCGGGCACCCCGCAAAGAGCCTACATTGCGCCATAGTCAGCGCGCGATTT TCCGCGCCAGAGGAGCCGCC
Downstream 100 bases:
>100_bases GGTGAAGCGCGCCGTGTCGCCGGACGGTTGAATGCCGCTCGGGGGGGTTCAGCAATGGATCGAGGCCGAGCGTGCGCGTC CGCCCGCGCCGACGCGCGCC
Product: ferric uptake regulator family protein
Products: NA
Alternate protein names: Zinc Uptake Regulation Protein; Ferric Uptake Regulator Fur Family; Transcriptional Regulator Fur Family; Transcriptional Regulator; FUR Family Transcriptional Regulator; Fe2+/Zn2+ Uptake Regulation Protein; Transcriptional Regulator Np; Fur Family Ferric Uptake Regulator; Zn Transport System Transcriptional Repressor; Ferric-Uptake Regulator; Ferric Uptake Regulation Protein; Fur-Family Ferric Uptake Regulator; Fur Family Transcriptional Regulator; Zinc Uptake Regulator ZUR; Fe2+/Zn2+ Uptake Regulation Protein-Like Protein; Zinc Uptake Transcriptional Regulator Fur Family; Ferric Uptake Regulator Fur Family Protein; Transcriptional Regulator Fur; Zinc Transporter-Like Regulatory Protein; Regulatory Protein; Zinc Uptake Transcriptional Repressor; Transcriptional Regulator TrmB; Zinc Transport-Related Regulatory Protein; Ferric Uptake Transcriptional Regulator; Zinc Uptake Transcriptional Regulator Protein; Transcriptional Repressor Of ZnuABC Operon; Zinc Uptake Regulator Protein; Fe2+/Zn2+ Uptake Regulation Proteins; Regulator Protein
Number of amino acids: Translated: 154; Mature: 153
Protein sequence:
>154_residues MGKHDHPHVEASGASLARAAQAALEGAGEAWTDMRAEIFDAVAAIGKPASAYEIADIVSQKRGKRVAPNSVYRILDLFVA NNLVRRVESANAFVANSHPGCLHDCIFLICDTCGTAVHVDDDTLSTGVRAAAEKTGFAAERPVIEVRGKCAECQ
Sequences:
>Translated_154_residues MGKHDHPHVEASGASLARAAQAALEGAGEAWTDMRAEIFDAVAAIGKPASAYEIADIVSQKRGKRVAPNSVYRILDLFVA NNLVRRVESANAFVANSHPGCLHDCIFLICDTCGTAVHVDDDTLSTGVRAAAEKTGFAAERPVIEVRGKCAECQ >Mature_153_residues GKHDHPHVEASGASLARAAQAALEGAGEAWTDMRAEIFDAVAAIGKPASAYEIADIVSQKRGKRVAPNSVYRILDLFVAN NLVRRVESANAFVANSHPGCLHDCIFLICDTCGTAVHVDDDTLSTGVRAAAEKTGFAAERPVIEVRGKCAECQ
Specific function: Acts As A Negative Controlling Element, Employing Zn(2+) As A Cofactor To Bind The Operator Of The Repressed Genes (Znuacb). [C]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16304; Mature: 16172
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKHDHPHVEASGASLARAAQAALEGAGEAWTDMRAEIFDAVAAIGKPASAYEIADIVSQ CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH KRGKRVAPNSVYRILDLFVANNLVRRVESANAFVANSHPGCLHDCIFLICDTCGTAVHVD HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCEEEEC DDTLSTGVRAAAEKTGFAAERPVIEVRGKCAECQ CHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCC >Mature Secondary Structure GKHDHPHVEASGASLARAAQAALEGAGEAWTDMRAEIFDAVAAIGKPASAYEIADIVSQ CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH KRGKRVAPNSVYRILDLFVANNLVRRVESANAFVANSHPGCLHDCIFLICDTCGTAVHVD HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCEEEEC DDTLSTGVRAAAEKTGFAAERPVIEVRGKCAECQ CHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA