Definition | Sphingopyxis alaskensis RB2256, complete genome. |
---|---|
Accession | NC_008048 |
Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485863
Identifier: 103485863
GI number: 103485863
Start: 379182
End: 380306
Strand: Direct
Name: 103485863
Synonym: Sala_0368
Alternate gene names: NA
Gene position: 379182-380306 (Clockwise)
Preceding gene: 103485862
Following gene: 103485865
Centisome position: 11.34
GC content: 68.27
Gene sequence:
>1125_bases ATGACGATCGGCGACGAGGAAAATATCCCGGCGGCCAGCGGTTCGCCGGACGCCTCGCTGACCCAGGACGACAGCTTTAC CGCGACGAGCCATGCGGGCCTCACCTATCCGTGGGGAGAGGCCGCGCCCGGCGCGGGCGAGACGATCCGCATCGCGGGCG GGATCAGCTGGGCGCGCATCCCGATGCCGGGTTCGCTCGGCCATATCAACAGTTGGCTGCTCGACGACGATGACGGTGTG GCGGTGGTCGATACCGGCGTCTGCCTGACCATGTGCTCTGATGCCTGGAAGGCGCTCTATGCGGGCGCGCTCAAGGACCG GCGGATCACGCGCGTGATCGGCACGCACCTCCACCCCGACCATATCGGTCTCGCCGGCTGGATCGCGAAAAAGCAGGGTG TGAAGCTGTGGATGACGCGCGGCGAAATGCTCACCGCACGCGCGATCGTCGCCGATTCGTCCGACAGCGCGCCCGAAGAG GCGCTGGCGCAGTCGCGCGCCGCGGGCTGGGATGCGGAGGCGATCGAAGCGCAGCGCGGGCGCGGCTGGAACATGTTCCA GCGCATGATCTTCACCCTGCCGCGCTCCTATGTGCGGATCGCCGACGGCGATGTCCTCGACATGGGGGCGCATCGCTGGC GCGTCGTTGTGGGATCGGGGCACAGCCCCGAACATGCGTGCCTGTGGAACGAGGCCGAAGGCGTGCTCATTTCGGGCGAC CAGGTGCTGCCGCGGATCAGTTCGAACGTGTCGGTGAACATCACCGAACCCGATGCCGACCCGCTGGGCGAATGGCTGGC GTCGATCGACAAGCTGCTGCGCACCGTTCCCGCCGACGTCATCGTCTGCCCCGCGCATGGCGAGCCGTTCAGGGGGCTGC ACGTCCGGATGACGGCGCTGCGCGACGAGCATCGGATGCGGCTGTACAACCTCGCCGAAGCGGTCGCCAGGGCGCCGATG CGCGCGGTCGATGCCTTTCCGCTGCTCTTCAATCGCCCGATCGGCGAGCATAACCGCGGGCTGGCAACGGGCGAAGCGCT CGCGCATCTGAAGCGGCTGGAGGTCGAGGGGCGGGTGAGGCGCGAGGATCGCGACGGCGTGTGGTGGTATCACGGGGTGG CGTGA
Upstream 100 bases:
>100_bases TTGCGAGGAGCGAAGCGACGAAGCAATCTCCTGCAATCGCCCTTTTGCAACGATGGCTGGAGATTGCTTCGCTTCGCTCG CAATGACAGGGGAGCAAGGC
Downstream 100 bases:
>100_bases GGCCGCTCAGGCGGCGTCGTGGAAAATCACCCCCAGCGTGTGCCGCCGCCCCGAACGGATTTCGCTGACGCCGTGACGCA TCGCAACGCGGTAATCGCCG
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: Metallo-Beta-Lactamase Family Protein; Beta-Lactamase Domain Protein; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Beta Lactamase; Metallo-Beta-Lactamase Superfamily Protein; Metallo-Beta-Lactamase Superfamily; Zn-Dependent Hydrolase; Metallo-Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase; Metallo-Dependent Enzymatic Protein; Hydrolase; AMP-Dependent Synthetase And Ligase; Zinc Metallohydrolase; Metal Dependent Hydrolase; Metallo-Hydrolase/Oxidoreductase Superfamily Protein; Zn-Dependent Hydrolase Including Glyoxylase-Like Protein; Zinc Metallohydrolase Glyoxalase II Family
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MTIGDEENIPAASGSPDASLTQDDSFTATSHAGLTYPWGEAAPGAGETIRIAGGISWARIPMPGSLGHINSWLLDDDDGV AVVDTGVCLTMCSDAWKALYAGALKDRRITRVIGTHLHPDHIGLAGWIAKKQGVKLWMTRGEMLTARAIVADSSDSAPEE ALAQSRAAGWDAEAIEAQRGRGWNMFQRMIFTLPRSYVRIADGDVLDMGAHRWRVVVGSGHSPEHACLWNEAEGVLISGD QVLPRISSNVSVNITEPDADPLGEWLASIDKLLRTVPADVIVCPAHGEPFRGLHVRMTALRDEHRMRLYNLAEAVARAPM RAVDAFPLLFNRPIGEHNRGLATGEALAHLKRLEVEGRVRREDRDGVWWYHGVA
Sequences:
>Translated_374_residues MTIGDEENIPAASGSPDASLTQDDSFTATSHAGLTYPWGEAAPGAGETIRIAGGISWARIPMPGSLGHINSWLLDDDDGV AVVDTGVCLTMCSDAWKALYAGALKDRRITRVIGTHLHPDHIGLAGWIAKKQGVKLWMTRGEMLTARAIVADSSDSAPEE ALAQSRAAGWDAEAIEAQRGRGWNMFQRMIFTLPRSYVRIADGDVLDMGAHRWRVVVGSGHSPEHACLWNEAEGVLISGD QVLPRISSNVSVNITEPDADPLGEWLASIDKLLRTVPADVIVCPAHGEPFRGLHVRMTALRDEHRMRLYNLAEAVARAPM RAVDAFPLLFNRPIGEHNRGLATGEALAHLKRLEVEGRVRREDRDGVWWYHGVA >Mature_373_residues TIGDEENIPAASGSPDASLTQDDSFTATSHAGLTYPWGEAAPGAGETIRIAGGISWARIPMPGSLGHINSWLLDDDDGVA VVDTGVCLTMCSDAWKALYAGALKDRRITRVIGTHLHPDHIGLAGWIAKKQGVKLWMTRGEMLTARAIVADSSDSAPEEA LAQSRAAGWDAEAIEAQRGRGWNMFQRMIFTLPRSYVRIADGDVLDMGAHRWRVVVGSGHSPEHACLWNEAEGVLISGDQ VLPRISSNVSVNITEPDADPLGEWLASIDKLLRTVPADVIVCPAHGEPFRGLHVRMTALRDEHRMRLYNLAEAVARAPMR AVDAFPLLFNRPIGEHNRGLATGEALAHLKRLEVEGRVRREDRDGVWWYHGVA
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40759; Mature: 40627
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIGDEENIPAASGSPDASLTQDDSFTATSHAGLTYPWGEAAPGAGETIRIAGGISWARI CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEEE PMPGSLGHINSWLLDDDDGVAVVDTGVCLTMCSDAWKALYAGALKDRRITRVIGTHLHPD CCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC HIGLAGWIAKKQGVKLWMTRGEMLTARAIVADSSDSAPEEALAQSRAAGWDAEAIEAQRG CCCHHHHHHHCCCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHCC RGWNMFQRMIFTLPRSYVRIADGDVLDMGAHRWRVVVGSGHSPEHACLWNEAEGVLISGD CCHHHHHHHHHHCCHHHEEECCCCEEECCCCEEEEEEECCCCCCCEEEEECCCCEEEECC QVLPRISSNVSVNITEPDADPLGEWLASIDKLLRTVPADVIVCPAHGEPFRGLHVRMTAL CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEH RDEHRMRLYNLAEAVARAPMRAVDAFPLLFNRPIGEHNRGLATGEALAHLKRLEVEGRVR HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE REDRDGVWWYHGVA ECCCCCEEEEECCC >Mature Secondary Structure TIGDEENIPAASGSPDASLTQDDSFTATSHAGLTYPWGEAAPGAGETIRIAGGISWARI CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEEE PMPGSLGHINSWLLDDDDGVAVVDTGVCLTMCSDAWKALYAGALKDRRITRVIGTHLHPD CCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC HIGLAGWIAKKQGVKLWMTRGEMLTARAIVADSSDSAPEEALAQSRAAGWDAEAIEAQRG CCCHHHHHHHCCCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHCC RGWNMFQRMIFTLPRSYVRIADGDVLDMGAHRWRVVVGSGHSPEHACLWNEAEGVLISGD CCHHHHHHHHHHCCHHHEEECCCCEEECCCCEEEEEEECCCCCCCEEEEECCCCEEEECC QVLPRISSNVSVNITEPDADPLGEWLASIDKLLRTVPADVIVCPAHGEPFRGLHVRMTAL CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEH RDEHRMRLYNLAEAVARAPMRAVDAFPLLFNRPIGEHNRGLATGEALAHLKRLEVEGRVR HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE REDRDGVWWYHGVA ECCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA