Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485862
Identifier: 103485862
GI number: 103485862
Start: 378392
End: 379054
Strand: Direct
Name: 103485862
Synonym: Sala_0367
Alternate gene names: NA
Gene position: 378392-379054 (Clockwise)
Preceding gene: 103485861
Following gene: 103485863
Centisome position: 11.31
GC content: 66.21
Gene sequence:
>663_bases ATGGCCAATGCCAATCCGACCCCGCTGATGCCGCATGCGACCGCCGCCTGGCTGGTCGACAACACCGGCCTGACTTTTGG CCAGATCGCCGAATTTTGCGGCATCCACATCCTCGAGGTGCAGGCGATCGCCGACGAGACGGCGGCGACCAAATATACCG GCCGCGACCCGGTGCGCGCGCACGAGTTGTCGATGGAGGAAATCGAAAAGGGGCAGAAGGACCCCAATTACAAGCTCAAG ATGACCGTGCAGGCGCAGGACGTGATTCGCCGCACCCGCGGGCCGCGCTACACCCCGGTCAGCAAGCGGCAGGACAAGCC CGACGGCATCGCATGGATCCTGAAGAACCACCCCGAAGTGTCCGACGGCGCGATCAGCAAGCTGATTGGCACGACGCGCA ACACGATCGGCGCGATCCGCGACCGCAGCCACTGGAACAGCGCGAACATCGTCCCGAAAGACCCGGTGACGCTGGGCCTC TGTTCGCAGCGCGAACTCGACGCGCTGGTCGCCAAGGCGGCGAAGAAGGCGGGGATCAAGGCGCCCGAGGACAGCCGGTT GGAGGGCGACCGCGAGGCGCTGCTCGAAGAACTGCGCGCCGAACGCACCGCGGCAAACGAAGCGCGCGCGGCCGAAGAGG CACAGGCCGACGGCGAAGACTGA
Upstream 100 bases:
>100_bases CGGCCTGCGCTTGCGCGGAACGCTATTAAGGTCTAAACCGCCGCCGGATGGCCGCCCCGCGAGGGGCGGCCCTTATTATT TCCGCTTTTGGAGTGCAGTC
Downstream 100 bases:
>100_bases AGCCTGTAATGGCGGCGCTTGCCGTCATTGCGAGGAGCGAAGCGACGAAGCAATCTCCTGCAATCGCCCTTTTGCAACGA TGGCTGGAGATTGCTTCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MANANPTPLMPHATAAWLVDNTGLTFGQIAEFCGIHILEVQAIADETAATKYTGRDPVRAHELSMEEIEKGQKDPNYKLK MTVQAQDVIRRTRGPRYTPVSKRQDKPDGIAWILKNHPEVSDGAISKLIGTTRNTIGAIRDRSHWNSANIVPKDPVTLGL CSQRELDALVAKAAKKAGIKAPEDSRLEGDREALLEELRAERTAANEARAAEEAQADGED
Sequences:
>Translated_220_residues MANANPTPLMPHATAAWLVDNTGLTFGQIAEFCGIHILEVQAIADETAATKYTGRDPVRAHELSMEEIEKGQKDPNYKLK MTVQAQDVIRRTRGPRYTPVSKRQDKPDGIAWILKNHPEVSDGAISKLIGTTRNTIGAIRDRSHWNSANIVPKDPVTLGL CSQRELDALVAKAAKKAGIKAPEDSRLEGDREALLEELRAERTAANEARAAEEAQADGED >Mature_219_residues ANANPTPLMPHATAAWLVDNTGLTFGQIAEFCGIHILEVQAIADETAATKYTGRDPVRAHELSMEEIEKGQKDPNYKLKM TVQAQDVIRRTRGPRYTPVSKRQDKPDGIAWILKNHPEVSDGAISKLIGTTRNTIGAIRDRSHWNSANIVPKDPVTLGLC SQRELDALVAKAAKKAGIKAPEDSRLEGDREALLEELRAERTAANEARAAEEAQADGED
Specific function: Unknown
COG id: COG3820
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24069; Mature: 23938
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANANPTPLMPHATAAWLVDNTGLTFGQIAEFCGIHILEVQAIADETAATKYTGRDPVRA CCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCEEEEEHHHHHHHHHHCCCCCCCCCHH HELSMEEIEKGQKDPNYKLKMTVQAQDVIRRTRGPRYTPVSKRQDKPDGIAWILKNHPEV HHCCHHHHHCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC SDGAISKLIGTTRNTIGAIRDRSHWNSANIVPKDPVTLGLCSQRELDALVAKAAKKAGIK CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCC APEDSRLEGDREALLEELRAERTAANEARAAEEAQADGED CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ANANPTPLMPHATAAWLVDNTGLTFGQIAEFCGIHILEVQAIADETAATKYTGRDPVRA CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCEEEEEHHHHHHHHHHCCCCCCCCCHH HELSMEEIEKGQKDPNYKLKMTVQAQDVIRRTRGPRYTPVSKRQDKPDGIAWILKNHPEV HHCCHHHHHCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC SDGAISKLIGTTRNTIGAIRDRSHWNSANIVPKDPVTLGLCSQRELDALVAKAAKKAGIK CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCC APEDSRLEGDREALLEELRAERTAANEARAAEEAQADGED CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA