Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is pyk [H]
Identifier: 103485836
GI number: 103485836
Start: 343046
End: 344500
Strand: Direct
Name: pyk [H]
Synonym: Sala_0341
Alternate gene names: 103485836
Gene position: 343046-344500 (Clockwise)
Preceding gene: 103485821
Following gene: 103485837
Centisome position: 10.25
GC content: 67.15
Gene sequence:
>1455_bases GTGGTTCAGAGCTTTACCCCCCGCCAGCGCAAGGTGCGTATCCTGGCGACGCTTGGCCCCGCGAGCGCCAATGCCGAGAT GATCGCCGCGCTGCACCGTGCGGGCGCCGACGCCTTTCGCGTCAATATGAGCCATGGCGACCATGCGGGTCATGCAAAGG TGATTGCGGCGATCCGGTCGCTTGAGAAGGAAACGGGGCGCCCGACGACGATCCTCGTCGACCTGCAGGGGCCAAAGCTG CGCGTCGGGACGTTCAGGGATGGCCCCGCCGAGCTGGTCAAGGGTGCAGCGTTCATGCTCGATACCGACACGGCTCCCGG CGACGCGACGCGCGTGCATCTGCCGCACCCCGAGCTGTTCGCGGCGCTCGAACCCGATACACGGCTGCTCATTGACGACG GCAAGCTGGTGTTGCGCGTGAAGAGCGTGTCGGCCGAGCGGATCGAAACGATTGTCGAGGTCGGGGGCAAGATTTCGGAT CGCAAGGGGGTCAATGTCCCCGACGTCGTCGTGCCGCTGGCGGCGCTCACCGAAAAGGATCGCAAGGATCTCGCCTTCGC GCTCGAACAGCATGTCGACTGGATCGCGCTGTCCTTCGTGCAGCGACCCGAAGATGTCGCCGAAGCGCGGCGGCTGATCG GCGGCAAGGCGGCGCTGCTCGTCAAGTTCGAGAAGCCGTCGGGGGTGCAGCGGATCGACGAGATTTTGGAACTTGCCGAC GCGGCGATGGTCGCGCGCGGCGATCTGGGGGTCGAACTTCCTCCCGAAGCCGTGCCGCCGCTTCAGAAACGCATCGTCGC GACCGCGCGGCGGATGGGCAAGCCGGTGGTGGTCGCGACGCAGATGCTCGAATCGATGATCGTCTCGCCCTCGCCGACGC GCGCGGAAGTCAGCGATGTCGCGACCGCGGTTTATGACGGCGCCGACGCGATCATGCTGTCGGCCGAGACCGCCGCGGGC GCGTGGCCGGTCGAAGCCGTCACCATGATGGATTCGATTGCGCGCTCGGTCGAAGGCGATCCCGATTATTTCCGCCGTCT CCACTTCACCGAGACACAGCCCGACGCGACAACCGCCGACGCGCTGGCCGAGGCGGCGGGCAGCATCATCACGACGATCG CCGCCGATGCGATCATCTGTTTCACTGCATCGGGATCGACCGCGCGCCGCGTCGCGCGCGAGCGGCCGGGCGCCCCCTTG CTCGTGCTGACGCCGAGGAAGGAAGCAGCGCGGCGCATGGGGCTGCTGTGGGGCGCGCATGCCGTGCCGACCAGGGACAT CGGCAGTTTCGAGGAGATGATCGCCAAGGGCAAGCGCATGGCGCTGCGCCACGGGATCGGCAAGGCGGGATCGAAGCTGG TGATGATGGCGGGGGTGCCATTCGGCACGCCGGGATCGACCAATGTGCTCCACGTCGCGACGCTGACCGGCGACGAGCTG CGTGGGTATAGCTGA
Upstream 100 bases:
>100_bases ATGTTCGGACTTTCCTGAATAGCTATACGGTGGTTGCGCTGGGGCGCGCGACGCGCCATGCCTCGCACACCGTAACGGCA ATCAGGCAAGCGGAGCAATC
Downstream 100 bases:
>100_bases GCAGAGCTTCGCCGGAATGACGAACGGGGAAGGCGGCGGCATTGTGATTCAGTCCGGCACAAAAGTTACCGACCGATTCA TAAAATATTCGATCTGATTC
Product: pyruvate kinase
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 484; Mature: 484
Protein sequence:
>484_residues MVQSFTPRQRKVRILATLGPASANAEMIAALHRAGADAFRVNMSHGDHAGHAKVIAAIRSLEKETGRPTTILVDLQGPKL RVGTFRDGPAELVKGAAFMLDTDTAPGDATRVHLPHPELFAALEPDTRLLIDDGKLVLRVKSVSAERIETIVEVGGKISD RKGVNVPDVVVPLAALTEKDRKDLAFALEQHVDWIALSFVQRPEDVAEARRLIGGKAALLVKFEKPSGVQRIDEILELAD AAMVARGDLGVELPPEAVPPLQKRIVATARRMGKPVVVATQMLESMIVSPSPTRAEVSDVATAVYDGADAIMLSAETAAG AWPVEAVTMMDSIARSVEGDPDYFRRLHFTETQPDATTADALAEAAGSIITTIAADAIICFTASGSTARRVARERPGAPL LVLTPRKEAARRMGLLWGAHAVPTRDIGSFEEMIAKGKRMALRHGIGKAGSKLVMMAGVPFGTPGSTNVLHVATLTGDEL RGYS
Sequences:
>Translated_484_residues MVQSFTPRQRKVRILATLGPASANAEMIAALHRAGADAFRVNMSHGDHAGHAKVIAAIRSLEKETGRPTTILVDLQGPKL RVGTFRDGPAELVKGAAFMLDTDTAPGDATRVHLPHPELFAALEPDTRLLIDDGKLVLRVKSVSAERIETIVEVGGKISD RKGVNVPDVVVPLAALTEKDRKDLAFALEQHVDWIALSFVQRPEDVAEARRLIGGKAALLVKFEKPSGVQRIDEILELAD AAMVARGDLGVELPPEAVPPLQKRIVATARRMGKPVVVATQMLESMIVSPSPTRAEVSDVATAVYDGADAIMLSAETAAG AWPVEAVTMMDSIARSVEGDPDYFRRLHFTETQPDATTADALAEAAGSIITTIAADAIICFTASGSTARRVARERPGAPL LVLTPRKEAARRMGLLWGAHAVPTRDIGSFEEMIAKGKRMALRHGIGKAGSKLVMMAGVPFGTPGSTNVLHVATLTGDEL RGYS >Mature_484_residues MVQSFTPRQRKVRILATLGPASANAEMIAALHRAGADAFRVNMSHGDHAGHAKVIAAIRSLEKETGRPTTILVDLQGPKL RVGTFRDGPAELVKGAAFMLDTDTAPGDATRVHLPHPELFAALEPDTRLLIDDGKLVLRVKSVSAERIETIVEVGGKISD RKGVNVPDVVVPLAALTEKDRKDLAFALEQHVDWIALSFVQRPEDVAEARRLIGGKAALLVKFEKPSGVQRIDEILELAD AAMVARGDLGVELPPEAVPPLQKRIVATARRMGKPVVVATQMLESMIVSPSPTRAEVSDVATAVYDGADAIMLSAETAAG AWPVEAVTMMDSIARSVEGDPDYFRRLHFTETQPDATTADALAEAAGSIITTIAADAIICFTASGSTARRVARERPGAPL LVLTPRKEAARRMGLLWGAHAVPTRDIGSFEEMIAKGKRMALRHGIGKAGSKLVMMAGVPFGTPGSTNVLHVATLTGDEL RGYS
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI10835121, Length=496, Percent_Identity=38.7096774193548, Blast_Score=293, Evalue=3e-79, Organism=Homo sapiens, GI32967597, Length=496, Percent_Identity=38.7096774193548, Blast_Score=293, Evalue=4e-79, Organism=Homo sapiens, GI33286418, Length=438, Percent_Identity=40.4109589041096, Blast_Score=292, Evalue=4e-79, Organism=Homo sapiens, GI33286422, Length=436, Percent_Identity=40.8256880733945, Blast_Score=292, Evalue=4e-79, Organism=Homo sapiens, GI33286420, Length=436, Percent_Identity=40.8256880733945, Blast_Score=292, Evalue=4e-79, Organism=Homo sapiens, GI310128732, Length=287, Percent_Identity=37.6306620209059, Blast_Score=186, Evalue=3e-47, Organism=Homo sapiens, GI310128730, Length=287, Percent_Identity=37.6306620209059, Blast_Score=186, Evalue=3e-47, Organism=Homo sapiens, GI310128736, Length=237, Percent_Identity=34.1772151898734, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI310128734, Length=237, Percent_Identity=34.1772151898734, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI310128738, Length=213, Percent_Identity=33.8028169014084, Blast_Score=120, Evalue=4e-27, Organism=Escherichia coli, GI1787965, Length=471, Percent_Identity=36.3057324840764, Blast_Score=288, Evalue=4e-79, Organism=Escherichia coli, GI1788160, Length=480, Percent_Identity=35.625, Blast_Score=250, Evalue=1e-67, Organism=Caenorhabditis elegans, GI17544584, Length=487, Percent_Identity=36.3449691991786, Blast_Score=290, Evalue=2e-78, Organism=Caenorhabditis elegans, GI17506829, Length=489, Percent_Identity=37.4233128834356, Blast_Score=265, Evalue=5e-71, Organism=Caenorhabditis elegans, GI71984413, Length=489, Percent_Identity=37.4233128834356, Blast_Score=264, Evalue=6e-71, Organism=Caenorhabditis elegans, GI71984406, Length=489, Percent_Identity=37.4233128834356, Blast_Score=264, Evalue=7e-71, Organism=Caenorhabditis elegans, GI17506831, Length=489, Percent_Identity=37.4233128834356, Blast_Score=264, Evalue=1e-70, Organism=Saccharomyces cerevisiae, GI6319279, Length=485, Percent_Identity=36.9072164948454, Blast_Score=263, Evalue=5e-71, Organism=Saccharomyces cerevisiae, GI6324923, Length=491, Percent_Identity=34.4195519348269, Blast_Score=249, Evalue=5e-67, Organism=Drosophila melanogaster, GI28571814, Length=493, Percent_Identity=36.105476673428, Blast_Score=278, Evalue=4e-75, Organism=Drosophila melanogaster, GI24648964, Length=493, Percent_Identity=36.105476673428, Blast_Score=278, Evalue=5e-75, Organism=Drosophila melanogaster, GI24648966, Length=416, Percent_Identity=37.7403846153846, Blast_Score=244, Evalue=1e-64, Organism=Drosophila melanogaster, GI24581235, Length=425, Percent_Identity=34.1176470588235, Blast_Score=232, Evalue=4e-61, Organism=Drosophila melanogaster, GI24646914, Length=311, Percent_Identity=35.3697749196142, Blast_Score=159, Evalue=5e-39,
Paralogues:
None
Copy number: 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 124 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR018209 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 51579; Mature: 51579
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQSFTPRQRKVRILATLGPASANAEMIAALHRAGADAFRVNMSHGDHAGHAKVIAAIRS CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH LEKETGRPTTILVDLQGPKLRVGTFRDGPAELVKGAAFMLDTDTAPGDATRVHLPHPELF HHHHCCCCEEEEEECCCCEEEEECCCCCHHHHHCCCEEEEECCCCCCCCEEEECCCHHHE AALEPDTRLLIDDGKLVLRVKSVSAERIETIVEVGGKISDRKGVNVPDVVVPLAALTEKD EEECCCCEEEEECCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCH RKDLAFALEQHVDWIALSFVQRPEDVAEARRLIGGKAALLVKFEKPSGVQRIDEILELAD HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHH AAMVARGDLGVELPPEAVPPLQKRIVATARRMGKPVVVATQMLESMIVSPSPTRAEVSDV HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHH ATAVYDGADAIMLSAETAAGAWPVEAVTMMDSIARSVEGDPDYFRRLHFTETQPDATTAD HHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHH ALAEAAGSIITTIAADAIICFTASGSTARRVARERPGAPLLVLTPRKEAARRMGLLWGAH HHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCC AVPTRDIGSFEEMIAKGKRMALRHGIGKAGSKLVMMAGVPFGTPGSTNVLHVATLTGDEL CCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCC RGYS CCCC >Mature Secondary Structure MVQSFTPRQRKVRILATLGPASANAEMIAALHRAGADAFRVNMSHGDHAGHAKVIAAIRS CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH LEKETGRPTTILVDLQGPKLRVGTFRDGPAELVKGAAFMLDTDTAPGDATRVHLPHPELF HHHHCCCCEEEEEECCCCEEEEECCCCCHHHHHCCCEEEEECCCCCCCCEEEECCCHHHE AALEPDTRLLIDDGKLVLRVKSVSAERIETIVEVGGKISDRKGVNVPDVVVPLAALTEKD EEECCCCEEEEECCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCH RKDLAFALEQHVDWIALSFVQRPEDVAEARRLIGGKAALLVKFEKPSGVQRIDEILELAD HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHH AAMVARGDLGVELPPEAVPPLQKRIVATARRMGKPVVVATQMLESMIVSPSPTRAEVSDV HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHH ATAVYDGADAIMLSAETAAGAWPVEAVTMMDSIARSVEGDPDYFRRLHFTETQPDATTAD HHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHH ALAEAAGSIITTIAADAIICFTASGSTARRVARERPGAPLLVLTPRKEAARRMGLLWGAH HHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCC AVPTRDIGSFEEMIAKGKRMALRHGIGKAGSKLVMMAGVPFGTPGSTNVLHVATLTGDEL CCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCC RGYS CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA