Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is ate
Identifier: 103485837
GI number: 103485837
Start: 344728
End: 345501
Strand: Direct
Name: ate
Synonym: Sala_0342
Alternate gene names: 103485837
Gene position: 344728-345501 (Clockwise)
Preceding gene: 103485836
Following gene: 103485838
Centisome position: 10.31
GC content: 65.5
Gene sequence:
>774_bases GTGTCCGCACCGTTCCGTTTTCCGCGCTTTTTCGTCACCAGCCCGGCGCCGTGCCCCTATCTGGCGGGCAGGACCGAACG CAAGGTTTTCACTGAGCTCAGCGGAAACAATGCAACCGAACTCAACGACGCGCTGGGCCGGATCGGCTTTCGCCGCAGCC AGTCGGTCGCCTATCGCCCGAGCTGCGCCGATTGTTCGGCGTGCGTTTCGGTGCGCGTCTGCGCGAGCGAGTTTGCGCCG AGCAACTCACAGAAGCGCACGCTGCGCCGCAACGGCGATCTGGTCGTCACGGCGTGCAAGCCGTGGGCCACCGAAGAGCA ATATGCGCTGCTGCGCTCCTATCTCGCCTCGCGCCACCCCGACGGCGGCATGGCCGACATGGACGAGCAGGATTTTGCCG ACATGGTCGAACAGACCCCGGTGGACAGCTATATGATCGAATATCGCGAGCCGGTGGCGGGCGGCGGCAAGGGGCGGCTT GTCGGCTGTTGCCTGACCGACCGGCAGGGCGACGGGCTGTCGATGATCTACAGCTTTTTCGATGCGCATCATCCGCTGCG CGAGGGGCTGGGCACCTACATCATCGCCGACCATGTGTTGCGCGCCGCCAAGGCGGGGCTGCCCTATGTCTACCTGGGCT ACTGGATCGAGGGATCGGCGCGCATGGCGTACAAGGCACGCTTCCGCCCGCTCGAAAAGCTCGGCCCCGATGGCTGGTCA CGCTTCGAGCCGACGCCGTCGGAGCGGATCGCGGCGATGTTCGAACTGGCTTGA
Upstream 100 bases:
>100_bases GGTCTTTGCACCATTGACGCCGCGCGGCATAGTTGGTGCAAACAGCGCGCCGGGCCCGCGTCGCAGGGCTCCGCATCGCC AGTTCGGAGGTCTATTCCGC
Downstream 100 bases:
>100_bases ATGGTGGCGGCTTCAGGCCGCTTCCGGTCGTTAGCAGCCTCCCGATAGGCGATGCCGCTTCCTCAATAACAAAAGATTGC GAACGTCTCGCAGCAATGCA
Product: arginyl-tRNA-protein transferase
Products: NA
Alternate protein names: Arginyltransferase; R-transferase
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MSAPFRFPRFFVTSPAPCPYLAGRTERKVFTELSGNNATELNDALGRIGFRRSQSVAYRPSCADCSACVSVRVCASEFAP SNSQKRTLRRNGDLVVTACKPWATEEQYALLRSYLASRHPDGGMADMDEQDFADMVEQTPVDSYMIEYREPVAGGGKGRL VGCCLTDRQGDGLSMIYSFFDAHHPLREGLGTYIIADHVLRAAKAGLPYVYLGYWIEGSARMAYKARFRPLEKLGPDGWS RFEPTPSERIAAMFELA
Sequences:
>Translated_257_residues MSAPFRFPRFFVTSPAPCPYLAGRTERKVFTELSGNNATELNDALGRIGFRRSQSVAYRPSCADCSACVSVRVCASEFAP SNSQKRTLRRNGDLVVTACKPWATEEQYALLRSYLASRHPDGGMADMDEQDFADMVEQTPVDSYMIEYREPVAGGGKGRL VGCCLTDRQGDGLSMIYSFFDAHHPLREGLGTYIIADHVLRAAKAGLPYVYLGYWIEGSARMAYKARFRPLEKLGPDGWS RFEPTPSERIAAMFELA >Mature_256_residues SAPFRFPRFFVTSPAPCPYLAGRTERKVFTELSGNNATELNDALGRIGFRRSQSVAYRPSCADCSACVSVRVCASEFAPS NSQKRTLRRNGDLVVTACKPWATEEQYALLRSYLASRHPDGGMADMDEQDFADMVEQTPVDSYMIEYREPVAGGGKGRLV GCCLTDRQGDGLSMIYSFFDAHHPLREGLGTYIIADHVLRAAKAGLPYVYLGYWIEGSARMAYKARFRPLEKLGPDGWSR FEPTPSERIAAMFELA
Specific function: May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate (Potential)
COG id: COG2935
COG function: function code O; Putative arginyl-tRNA:protein arginylyltransferase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the R-transferase family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): ATE_SPHAL (Q1GWA7)
Other databases:
- EMBL: CP000356 - RefSeq: YP_615398.1 - GeneID: 4081040 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_0342 - NMPDR: fig|317655.9.peg.317 - HOGENOM: HBG651116 - OMA: PQFYLTA - ProtClustDB: PRK01305 - BioCyc: SALA317655:SALA_0342-MONOMER - BRENDA: 2.3.2.8 - GO: GO:0005737 - GO: GO:0006412 - HAMAP: MF_00689 - InterPro: IPR016181 - InterPro: IPR007472 - InterPro: IPR017138 - InterPro: IPR007471 - PIRSF: PIRSF037208
Pfam domain/function: PF04377 ATE_C; PF04376 ATE_N; SSF55729 Acyl_CoA_acyltransferase
EC number: =2.3.2.8
Molecular weight: Translated: 28583; Mature: 28452
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPFRFPRFFVTSPAPCPYLAGRTERKVFTELSGNNATELNDALGRIGFRRSQSVAYRP CCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECC SCADCSACVSVRVCASEFAPSNSQKRTLRRNGDLVVTACKPWATEEQYALLRSYLASRHP CCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC DGGMADMDEQDFADMVEQTPVDSYMIEYREPVAGGGKGRLVGCCLTDRQGDGLSMIYSFF CCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH DAHHPLREGLGTYIIADHVLRAAKAGLPYVYLGYWIEGSARMAYKARFRPLEKLGPDGWS HHCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEHHHHCCCHHHHCCCCCC RFEPTPSERIAAMFELA CCCCCHHHHHHHHHHCC >Mature Secondary Structure SAPFRFPRFFVTSPAPCPYLAGRTERKVFTELSGNNATELNDALGRIGFRRSQSVAYRP CCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECC SCADCSACVSVRVCASEFAPSNSQKRTLRRNGDLVVTACKPWATEEQYALLRSYLASRHP CCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC DGGMADMDEQDFADMVEQTPVDSYMIEYREPVAGGGKGRLVGCCLTDRQGDGLSMIYSFF CCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH DAHHPLREGLGTYIIADHVLRAAKAGLPYVYLGYWIEGSARMAYKARFRPLEKLGPDGWS HHCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEHHHHCCCHHHHCCCCCC RFEPTPSERIAAMFELA CCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA