Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485820
Identifier: 103485820
GI number: 103485820
Start: 331593
End: 332309
Strand: Direct
Name: 103485820
Synonym: Sala_0325
Alternate gene names: NA
Gene position: 331593-332309 (Clockwise)
Preceding gene: 103485819
Following gene: 103485821
Centisome position: 9.91
GC content: 74.34
Gene sequence:
>717_bases ATGAGCGTGCGGCGGCGCTGGATCGTTGCGGCGGCGCTGCTGGCGCTCGTCCTGCTTGTCGCGACCTTTCCGATGCGCCT CGCGCTCGGCTGGTCGGGGGCGGGCGACGCGGGGGTGTCGGCGCGGACGGTGCGCGGATCGGTCTGGTCGGCCGAACTGG TCGATGCGCGGCTCGGCGCGCTGCCGCTCGGCACGGTGCGCGCCAGCCTGTCGCCGCTGGCGCTGCTCACCGGCGCGACC GAACTGGCTTTCGAGCGCAGCGACGACCGGCTCGGCGCGCTCGCGGGACGGCTGCACGGCACCAGTCCGCGCGGCATGTC CGACGTCAATGGGATGAGCGCGATGGTCGGCGGGCTGGGCATGATCCCGGTCGATACGATCCGCTTCGAGGGCGCGACGG TGCGCTTCGACGATGCGGGCAAATGCGTGCGCGCGAGCGGCCGGGTGCAGCTGATGGTCGCCGCGCCGATCGCGGGGCTC GACCTGTCGCGCGGGCTCTCCGGCCCGCTCCGCTGCGCGAACGGGCGCGCCGAAGCGGCGCTCGCCAGCCAGTCGGGGAT GGAGCGGTTGACGCTGATCTTCGATGGCGGCGGGGCCTGGCGCGCACGCCTTGCCATCAGCGTCGACCGCGATCCGACAA TGGCGGCGGCGCTCGCGGCGCTGGGCTTCCGCGCTGCGCCGGGCGGGTTCGTGCTGGCGACTTCGGGTCGCTTCTGA
Upstream 100 bases:
>100_bases CGTCGCTCGAAGCGCAGGGCTTTGTCATCGACCAGCTCACCATCACCCCCGCCGCCGACGGCACGGTCGGGATGACGGCG GAACTCAGAAAGGGCGGACA
Downstream 100 bases:
>100_bases AAGATGAATAGCGCAGCATATCCCGTTCGCGTCGAGCGAAGTCGAGACGCCGTGCCGGCCAGCCGGGCGTCTCGACTTCG CTCGACGCGAACGGATTAGA
Product: type II secretion system protein N
Products: NA
Alternate protein names: Type II Secretory Pathway Component PulN
Number of amino acids: Translated: 238; Mature: 237
Protein sequence:
>238_residues MSVRRRWIVAAALLALVLLVATFPMRLALGWSGAGDAGVSARTVRGSVWSAELVDARLGALPLGTVRASLSPLALLTGAT ELAFERSDDRLGALAGRLHGTSPRGMSDVNGMSAMVGGLGMIPVDTIRFEGATVRFDDAGKCVRASGRVQLMVAAPIAGL DLSRGLSGPLRCANGRAEAALASQSGMERLTLIFDGGGAWRARLAISVDRDPTMAAALAALGFRAAPGGFVLATSGRF
Sequences:
>Translated_238_residues MSVRRRWIVAAALLALVLLVATFPMRLALGWSGAGDAGVSARTVRGSVWSAELVDARLGALPLGTVRASLSPLALLTGAT ELAFERSDDRLGALAGRLHGTSPRGMSDVNGMSAMVGGLGMIPVDTIRFEGATVRFDDAGKCVRASGRVQLMVAAPIAGL DLSRGLSGPLRCANGRAEAALASQSGMERLTLIFDGGGAWRARLAISVDRDPTMAAALAALGFRAAPGGFVLATSGRF >Mature_237_residues SVRRRWIVAAALLALVLLVATFPMRLALGWSGAGDAGVSARTVRGSVWSAELVDARLGALPLGTVRASLSPLALLTGATE LAFERSDDRLGALAGRLHGTSPRGMSDVNGMSAMVGGLGMIPVDTIRFEGATVRFDDAGKCVRASGRVQLMVAAPIAGLD LSRGLSGPLRCANGRAEAALASQSGMERLTLIFDGGGAWRARLAISVDRDPTMAAALAALGFRAAPGGFVLATSGRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24459; Mature: 24328
Theoretical pI: Translated: 11.79; Mature: 11.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVRRRWIVAAALLALVLLVATFPMRLALGWSGAGDAGVSARTVRGSVWSAELVDARLGA CCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHCC LPLGTVRASLSPLALLTGATELAFERSDDRLGALAGRLHGTSPRGMSDVNGMSAMVGGLG CCCHHHHHCCCCHHHHHCCHHHEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCC MIPVDTIRFEGATVRFDDAGKCVRASGRVQLMVAAPIAGLDLSRGLSGPLRCANGRAEAA CCCEEEEEECCCEEEECCCCCEEECCCCEEEEEECCCCCCCHHCCCCCCCEECCCCCHHH LASQSGMERLTLIFDGGGAWRARLAISVDRDPTMAAALAALGFRAAPGGFVLATSGRF HHHHCCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCC >Mature Secondary Structure SVRRRWIVAAALLALVLLVATFPMRLALGWSGAGDAGVSARTVRGSVWSAELVDARLGA CCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHCC LPLGTVRASLSPLALLTGATELAFERSDDRLGALAGRLHGTSPRGMSDVNGMSAMVGGLG CCCHHHHHCCCCHHHHHCCHHHEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCC MIPVDTIRFEGATVRFDDAGKCVRASGRVQLMVAAPIAGLDLSRGLSGPLRCANGRAEAA CCCEEEEEECCCEEEECCCCCEEECCCCEEEEEECCCCCCCHHCCCCCCCEECCCCCHHH LASQSGMERLTLIFDGGGAWRARLAISVDRDPTMAAALAALGFRAAPGGFVLATSGRF HHHHCCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA