The gene/protein map for NC_008048 is currently unavailable.
Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485808

Identifier: 103485808

GI number: 103485808

Start: 318409

End: 321102

Strand: Direct

Name: 103485808

Synonym: Sala_0313

Alternate gene names: NA

Gene position: 318409-321102 (Clockwise)

Preceding gene: 103485807

Following gene: 103485809

Centisome position: 9.52

GC content: 63.77

Gene sequence:

>2694_bases
ATGACCAAGCGGCCGATCTTCGCCAGCCTGCTCCTCCTTAGCACCGCGCTTGTCGCTCCTGCCGCGCTTGCGCAGGGCAG
CGGCGCCGATCCGGCGCCGGCCGCCGCCGACGAGCCCGTCGCCGACGCGGCCGCGCAGGACGAGGACGCCGATATTTCGA
TTCCGGGCGGCGCCGACGCCGAGATCGTCGTCACCGGCCGCTTCACGCCCAATGTCGTCCGCGCGACGCCCGAAGTCGTT
TCGGTGCTGTCGTCGGCCGACATTGCGCGGACCGGCGAGGGCGACATCGCCGGCTCGCTCCAGCGCGTGACCGGCCTGTC
GGTCGTCGGCAATGGGTTCGTCTATGTCCGCGGCCTTGGCGACCGCTATTCGCTGGCGCTGCTCAACGGATCGCCGCTGC
CCAGCCCCGAACCGCTGAAGCGCGTCGTTCCGCTCGACCTCTTTCCGTCGAACGTGATCGATTCGACGCTGGTGCAGAAA
AGCTATTCGGCGAACTTCCCCGGCGAATTCGGCGGCGGCGTGATCAACCTCACGACCAAATCGACCCCGCGCGAAACCTT
TCTGACCTTCTCGGGCGGCGTCGGCTGGGACAGCGAGACGACGAACGAGCTTGGCTATACCTATTATGGCAGCGACACCG
ACTGGACGGGCTTCGACGATGGCACGCGCGATGTGCCGCCGCTCTTGAAGGCCGCCTTTGCCAGCGGCAAGCCGATCCTC
GAAGGCGCCGATTTCACGCAGGACGATCTCGAGGCGATCCAGATGGAACTGGTCAACGCCGAGACGAGCCTGCTCCAGCA
GAATGATCATATCCCGATCAACTGGTCGGCGGGGATCACCGGCGGCACGACGATCACGCTGCCCAACGGCGAGCTGGGTA
TCATCGCCACCATGGGGATCAGCAACAAGTGGCGCACGCGCGACACGCTGCAACAAACGTCGCTGAACCAGGATCTCTCG
GGCGATCCGCAGACGAGCTTCAACCGCGTCATCACCGACAACCGCATCGTCGTGAACGGGCTGCTTGGCTTCGGGCTCGA
ACTGGGCGATCACAAGTTCCGCTGGACCAATTTGTTCATCCGCGACACGCTGAAGCAGGCGCGCCTCGGCCTCGGCGTCG
ATCGCAACCAGTCCGAACGCGACATTCTGGAGCAGGACACGGCGTGGTACGAGCGTCAGCTCATCAACACGCAGCTGGTG
GCCGAGTTCGATTTCGACCGGTTGCAGCTCGACCTGCGCGGCGGTTACGCCAATTCGCAGCGCGAGGCGCCCTATGAGCG
CGGCTTCACCTATGTCCGCACCAACCTGCCGACCGAACAGGATCCGACGGGCGACAAGTTCGTCAACGACCTCGGCGGCA
ACCGCGGCGATGCGACGATCGCCTTTTCGGACCTCACCGAAAATCTGTGGTCGGGCGGTGTCGATCTGTCCTATGAAGTG
GCGCCGCGTATCACCGCGACGATCGGCTATGCCTATAGCGACACCAGCCGCACCGCCGTGCGCCGCGCCTTCCAGTTCCG
CGGATCGAACCTGCCCGTCGAGGTCACGCAACTGCGCCCCGACTATCTCCTCTCCGACGCGACGATCCAGCTCTATGACA
TCTCGCTGCTCGAAACCTCGGCGCAGGACGGCACCGCCGCCTTCGATGCGGCGCTGACGACGCACGCGGGCTATGGCCAG
GTGCAGGCCGAGATCATTCCGGGGGTCAACATCAACGCGGGCGTCCGGTACGAGGATGCCAGGCAGACGGTGCGCCCGAT
CGACCTGTTCAACACGGGCAGCAGCGCGATCGTCGCGACAAACCTCAACAATGATTATTGGCTCCCCGCGGTCACGCTGA
CCTGGGAAGTCGCGCCCGACATGCAGCTGCGCATCAACGGGTCGAAGACGATCGCCCGCCCGCAGTTCCGCGAGCTGATC
GCCCAAGTCTATCAGGATCCCGAATCGAACCGCGAGTTCCGCGGCAACCCGTCGCTGACCGACAGCGAGCTGTGGAATGC
CGAGGTGCGGTACGAATGGTATTTCGATCGCGACCAGCGCTTCACGCTGGCCGGTTTCTACAAGTCGATCGACCGACCGA
TCGAAACCTTCACCTCGATCAGCACCGACTCGGTCGCCAACTCCAGTTTCGCCAACGCGCCGAAGGCGACCCTCTATGGC
GCCGAGGTCGAGGTGCAGAAATATGTCCCGCTCGATACGCTGTCCGACGCGCCCTTCTGGCAGAGCCGCCGCCTCGTGCT
CATCGGCAACTACACCTATACCAAGTCGGAAATTAAGGTCGGCGACGACGATACGACGGTGATCAACGGCGTGACGCTGA
GCGCCGCCGACTTCTTCTTCGACGGCTCGCCGCTGACCGGCCAGTCGGATCATATCGTCAATTTCCAGATCGGGATCGAG
GATCAGGACAAATTGTCGCAACAAACGCTGCTTTTCACCTATGCCAGCCCGCGCGTCACCAGCCGCGGTCCGTCACAGCA
GCCCGATATTCGCGAAAAACCGGGCATTTCGGTCGATTTCGTGGCGCGGCAGGGCGTGACCCTGCTCAACAAGGACATCG
AACTGAAGTTCGAGGCGCGCAACCTGACCGGGCGCACCTATAAGGAAGTGCAGGAAGCGGGCGACAACCGCATCTTCCTC
AACCGCTACAAGCTGGGGCGGACTTTCTCGCTCAGCGCGTCGCTGAAGTTCTGA

Upstream 100 bases:

>100_bases
CATCCCGACGACCTGATCGCCCGCGATCGATTTTGGGGAGCGGGCTGCCGGCAACGGTCGGCCCGCTCCCTTCTTGACAA
TATCCCTGGGGACATATTCC

Downstream 100 bases:

>100_bases
CAAGGGCGAAGGCCTCTCTCCACAGGGGGAGGGGCCATTTCCGCCTCGCCGGACTCGCCGGGCCGACAAAAAACTGTAAT
CTTCCCGTCAACTGATTGTC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Outer Membrane Protein; NB-Dependent Receptor Protein; Nb-Dependent Receptor; Nb-Dependent Receptor Plug; LOW QUALITY PROTEIN nB-Dependent Receptor; NB-Dependent Receptor-Like Protein; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Plug Domain Protein; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 897; Mature: 896

Protein sequence:

>897_residues
MTKRPIFASLLLLSTALVAPAALAQGSGADPAPAAADEPVADAAAQDEDADISIPGGADAEIVVTGRFTPNVVRATPEVV
SVLSSADIARTGEGDIAGSLQRVTGLSVVGNGFVYVRGLGDRYSLALLNGSPLPSPEPLKRVVPLDLFPSNVIDSTLVQK
SYSANFPGEFGGGVINLTTKSTPRETFLTFSGGVGWDSETTNELGYTYYGSDTDWTGFDDGTRDVPPLLKAAFASGKPIL
EGADFTQDDLEAIQMELVNAETSLLQQNDHIPINWSAGITGGTTITLPNGELGIIATMGISNKWRTRDTLQQTSLNQDLS
GDPQTSFNRVITDNRIVVNGLLGFGLELGDHKFRWTNLFIRDTLKQARLGLGVDRNQSERDILEQDTAWYERQLINTQLV
AEFDFDRLQLDLRGGYANSQREAPYERGFTYVRTNLPTEQDPTGDKFVNDLGGNRGDATIAFSDLTENLWSGGVDLSYEV
APRITATIGYAYSDTSRTAVRRAFQFRGSNLPVEVTQLRPDYLLSDATIQLYDISLLETSAQDGTAAFDAALTTHAGYGQ
VQAEIIPGVNINAGVRYEDARQTVRPIDLFNTGSSAIVATNLNNDYWLPAVTLTWEVAPDMQLRINGSKTIARPQFRELI
AQVYQDPESNREFRGNPSLTDSELWNAEVRYEWYFDRDQRFTLAGFYKSIDRPIETFTSISTDSVANSSFANAPKATLYG
AEVEVQKYVPLDTLSDAPFWQSRRLVLIGNYTYTKSEIKVGDDDTTVINGVTLSAADFFFDGSPLTGQSDHIVNFQIGIE
DQDKLSQQTLLFTYASPRVTSRGPSQQPDIREKPGISVDFVARQGVTLLNKDIELKFEARNLTGRTYKEVQEAGDNRIFL
NRYKLGRTFSLSASLKF

Sequences:

>Translated_897_residues
MTKRPIFASLLLLSTALVAPAALAQGSGADPAPAAADEPVADAAAQDEDADISIPGGADAEIVVTGRFTPNVVRATPEVV
SVLSSADIARTGEGDIAGSLQRVTGLSVVGNGFVYVRGLGDRYSLALLNGSPLPSPEPLKRVVPLDLFPSNVIDSTLVQK
SYSANFPGEFGGGVINLTTKSTPRETFLTFSGGVGWDSETTNELGYTYYGSDTDWTGFDDGTRDVPPLLKAAFASGKPIL
EGADFTQDDLEAIQMELVNAETSLLQQNDHIPINWSAGITGGTTITLPNGELGIIATMGISNKWRTRDTLQQTSLNQDLS
GDPQTSFNRVITDNRIVVNGLLGFGLELGDHKFRWTNLFIRDTLKQARLGLGVDRNQSERDILEQDTAWYERQLINTQLV
AEFDFDRLQLDLRGGYANSQREAPYERGFTYVRTNLPTEQDPTGDKFVNDLGGNRGDATIAFSDLTENLWSGGVDLSYEV
APRITATIGYAYSDTSRTAVRRAFQFRGSNLPVEVTQLRPDYLLSDATIQLYDISLLETSAQDGTAAFDAALTTHAGYGQ
VQAEIIPGVNINAGVRYEDARQTVRPIDLFNTGSSAIVATNLNNDYWLPAVTLTWEVAPDMQLRINGSKTIARPQFRELI
AQVYQDPESNREFRGNPSLTDSELWNAEVRYEWYFDRDQRFTLAGFYKSIDRPIETFTSISTDSVANSSFANAPKATLYG
AEVEVQKYVPLDTLSDAPFWQSRRLVLIGNYTYTKSEIKVGDDDTTVINGVTLSAADFFFDGSPLTGQSDHIVNFQIGIE
DQDKLSQQTLLFTYASPRVTSRGPSQQPDIREKPGISVDFVARQGVTLLNKDIELKFEARNLTGRTYKEVQEAGDNRIFL
NRYKLGRTFSLSASLKF
>Mature_896_residues
TKRPIFASLLLLSTALVAPAALAQGSGADPAPAAADEPVADAAAQDEDADISIPGGADAEIVVTGRFTPNVVRATPEVVS
VLSSADIARTGEGDIAGSLQRVTGLSVVGNGFVYVRGLGDRYSLALLNGSPLPSPEPLKRVVPLDLFPSNVIDSTLVQKS
YSANFPGEFGGGVINLTTKSTPRETFLTFSGGVGWDSETTNELGYTYYGSDTDWTGFDDGTRDVPPLLKAAFASGKPILE
GADFTQDDLEAIQMELVNAETSLLQQNDHIPINWSAGITGGTTITLPNGELGIIATMGISNKWRTRDTLQQTSLNQDLSG
DPQTSFNRVITDNRIVVNGLLGFGLELGDHKFRWTNLFIRDTLKQARLGLGVDRNQSERDILEQDTAWYERQLINTQLVA
EFDFDRLQLDLRGGYANSQREAPYERGFTYVRTNLPTEQDPTGDKFVNDLGGNRGDATIAFSDLTENLWSGGVDLSYEVA
PRITATIGYAYSDTSRTAVRRAFQFRGSNLPVEVTQLRPDYLLSDATIQLYDISLLETSAQDGTAAFDAALTTHAGYGQV
QAEIIPGVNINAGVRYEDARQTVRPIDLFNTGSSAIVATNLNNDYWLPAVTLTWEVAPDMQLRINGSKTIARPQFRELIA
QVYQDPESNREFRGNPSLTDSELWNAEVRYEWYFDRDQRFTLAGFYKSIDRPIETFTSISTDSVANSSFANAPKATLYGA
EVEVQKYVPLDTLSDAPFWQSRRLVLIGNYTYTKSEIKVGDDDTTVINGVTLSAADFFFDGSPLTGQSDHIVNFQIGIED
QDKLSQQTLLFTYASPRVTSRGPSQQPDIREKPGISVDFVARQGVTLLNKDIELKFEARNLTGRTYKEVQEAGDNRIFLN
RYKLGRTFSLSASLKF

Specific function: Unknown

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 98358; Mature: 98227

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKRPIFASLLLLSTALVAPAALAQGSGADPAPAAADEPVADAAAQDEDADISIPGGADA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCC
EIVVTGRFTPNVVRATPEVVSVLSSADIARTGEGDIAGSLQRVTGLSVVGNGFVYVRGLG
EEEEEECCCCCHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCEEEECCCEEEEEECC
DRYSLALLNGSPLPSPEPLKRVVPLDLFPSNVIDSTLVQKSYSANFPGEFGGGVINLTTK
CCEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
STPRETFLTFSGGVGWDSETTNELGYTYYGSDTDWTGFDDGTRDVPPLLKAAFASGKPIL
CCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
EGADFTQDDLEAIQMELVNAETSLLQQNDHIPINWSAGITGGTTITLPNGELGIIATMGI
CCCCCCHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEEEEECC
SNKWRTRDTLQQTSLNQDLSGDPQTSFNRVITDNRIVVNGLLGFGLELGDHKFRWTNLFI
CCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEHHHCCEEECCCEEEEEEEHH
RDTLKQARLGLGVDRNQSERDILEQDTAWYERQLINTQLVAEFDFDRLQLDLRGGYANSQ
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCC
REAPYERGFTYVRTNLPTEQDPTGDKFVNDLGGNRGDATIAFSDLTENLWSGGVDLSYEV
CCCCHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCEEEEE
APRITATIGYAYSDTSRTAVRRAFQFRGSNLPVEVTQLRPDYLLSDATIQLYDISLLETS
CCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCEEEEEEEEEEECC
AQDGTAAFDAALTTHAGYGQVQAEIIPGVNINAGVRYEDARQTVRPIDLFNTGSSAIVAT
CCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEHHHHHCCCCEEEECCCCCEEEEE
NLNNDYWLPAVTLTWEVAPDMQLRINGSKTIARPQFRELIAQVYQDPESNREFRGNPSLT
ECCCCEEEEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
DSELWNAEVRYEWYFDRDQRFTLAGFYKSIDRPIETFTSISTDSVANSSFANAPKATLYG
CHHHCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC
AEVEVQKYVPLDTLSDAPFWQSRRLVLIGNYTYTKSEIKVGDDDTTVINGVTLSAADFFF
CEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEECCEEEECCCCCEEEECEEEEEEHEEE
DGSPLTGQSDHIVNFQIGIEDQDKLSQQTLLFTYASPRVTSRGPSQQPDIREKPGISVDF
CCCCCCCCCCEEEEEEECCCCHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
VARQGVTLLNKDIELKFEARNLTGRTYKEVQEAGDNRIFLNRYKLGRTFSLSASLKF
EECCCCEEECCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECC
>Mature Secondary Structure 
TKRPIFASLLLLSTALVAPAALAQGSGADPAPAAADEPVADAAAQDEDADISIPGGADA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCC
EIVVTGRFTPNVVRATPEVVSVLSSADIARTGEGDIAGSLQRVTGLSVVGNGFVYVRGLG
EEEEEECCCCCHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCEEEECCCEEEEEECC
DRYSLALLNGSPLPSPEPLKRVVPLDLFPSNVIDSTLVQKSYSANFPGEFGGGVINLTTK
CCEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
STPRETFLTFSGGVGWDSETTNELGYTYYGSDTDWTGFDDGTRDVPPLLKAAFASGKPIL
CCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
EGADFTQDDLEAIQMELVNAETSLLQQNDHIPINWSAGITGGTTITLPNGELGIIATMGI
CCCCCCHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEEEEECC
SNKWRTRDTLQQTSLNQDLSGDPQTSFNRVITDNRIVVNGLLGFGLELGDHKFRWTNLFI
CCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEHHHCCEEECCCEEEEEEEHH
RDTLKQARLGLGVDRNQSERDILEQDTAWYERQLINTQLVAEFDFDRLQLDLRGGYANSQ
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCC
REAPYERGFTYVRTNLPTEQDPTGDKFVNDLGGNRGDATIAFSDLTENLWSGGVDLSYEV
CCCCHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCEEEEE
APRITATIGYAYSDTSRTAVRRAFQFRGSNLPVEVTQLRPDYLLSDATIQLYDISLLETS
CCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCEEEEEEEEEEECC
AQDGTAAFDAALTTHAGYGQVQAEIIPGVNINAGVRYEDARQTVRPIDLFNTGSSAIVAT
CCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEHHHHHCCCCEEEECCCCCEEEEE
NLNNDYWLPAVTLTWEVAPDMQLRINGSKTIARPQFRELIAQVYQDPESNREFRGNPSLT
ECCCCEEEEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
DSELWNAEVRYEWYFDRDQRFTLAGFYKSIDRPIETFTSISTDSVANSSFANAPKATLYG
CHHHCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC
AEVEVQKYVPLDTLSDAPFWQSRRLVLIGNYTYTKSEIKVGDDDTTVINGVTLSAADFFF
CEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEECCEEEECCCCCEEEECEEEEEEHEEE
DGSPLTGQSDHIVNFQIGIEDQDKLSQQTLLFTYASPRVTSRGPSQQPDIREKPGISVDF
CCCCCCCCCCEEEEEEECCCCHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
VARQGVTLLNKDIELKFEARNLTGRTYKEVQEAGDNRIFLNRYKLGRTFSLSASLKF
EECCCCEEECCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA