Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485807

Identifier: 103485807

GI number: 103485807

Start: 316747

End: 318324

Strand: Direct

Name: 103485807

Synonym: Sala_0312

Alternate gene names: NA

Gene position: 316747-318324 (Clockwise)

Preceding gene: 103485806

Following gene: 103485808

Centisome position: 9.47

GC content: 67.36

Gene sequence:

>1578_bases
ATGGCGGCTTTCGCACGCATTCATATGGTCATGCTCAGCGGCGTGGCCTGTTCCATTCTGGCCGCTTGCGGCGCCGACGG
CGTGGCCTCGCCGGGCGAGGGCGTGATCGTCGTCCCCGCGCCGACCCCGACCCCGACCCCCACGCCCACGCCGACCCCGA
CGCCCACCGGCGTCACCCCGGCCGCAAATTGCCCGACGATCGCCGGCGCCGACCAGCTCACCGACCTCGGCACGATCACC
GGCAACGAAGGCACCTGGCGCAACTGCGGTTTCCCCGCGCGCTTCAATTCGACCACGGCGATCCCGAAGGTCGCCGGCGT
GATTTACTCGCTGCCCGGCCGCGTCGATGTCGGCACCGACCAGGGTCCGACCGAGGAAGCGGGCGACCCCGCCGACGTCA
CGCTGACGATTGATCCCGGCGTCACCATCTTTGGCGCGACGGGCGTGTCCTTCCTCGCCGTCAACCGCGGCAACAAGATC
GACGCGGTCGGCACCCCGACCCAGCCGATCGTCTTCACCGGCCGCGGCAATGTTGTCGGCAGCGCGACCGACAACACGTC
GCAGCTGTGGGGCGGTGTCGTCCTGCTCGGCCGCGCGCCGATCACCGACTGCCTTGCCCCCGCCGCGACCCCCGGCACCG
CTGCGTGCGAACGCAACACCGAAGGCGCGACCAACGCGCTTTATGGCGGCGCCACCGCGAACGACAATTCGGGTCGCATG
TCCTATGTCCAGATCCGCTATTCGGGCTTTGTCCTGTCGGCGAACAGCGAGCTTCAGGGCCTGACCCCCTCGGGCGTTGG
TTCGGGCACCCAGATCGACCATATCCAGATTCACAACAGCTCGGACGATGGCGCCGAAGTGTTCGGCGGCCGGGTCAATA
TGAAGCATCTCGTCATCACCGGCGCCGAGGATGACGGTCTCGACACCGACGTCGGTTATCAGGGCAATATCCAATATGTC
ATCGGCGTCCAGCGCGCCGGCGGCGCGGTCGGCGACTCGATGATGGAAATCGACTCGGACGGCAACGAAGAGGCGATCCC
GCGCCAGCGCGTCGCGCTGTCGAACTTCACCTATATCCAGCGCAACAATGCGGCGGGCAATGGCGCGGCGATCCGCATCC
GCGGCGGCGCCGACTATATGTTCGCCAACGGCCTGATCGTCGCGCCGGGCATTCGCTGCCTCCGCATCGACAGCGTCACG
ACCGTTCGCGCTGCCGATCCCGCGCTTGACGATCAGGGCCCGCCGCGCTTCGAATCGGTGTCGCTCCAGTGCAACGCGAC
GCCCTTCCGCGGCTCGAACGGTGTCACCGATGCCGAGGTGCAGGCGATTTTCGAAGCCGGCACCAACAACCGGTCGAACT
ATGTGCCCAGCCTGACCAACCTGTTCGTCAACGGGGCCACCGAAACCGGCTTCACGCCCTTCGACGCGAAGACGCTGAAC
GCCTTCTTCGACACCACCGCCTATGTCGGCGCCGTCCGCGACGCCAACGACAGCTGGTACCAGGGCTGGACCTGCAACTC
GGCGACGGCGGACTTCGGCACGTCGAGCGGCAGCTGCACCGGCATCCCGACGACCTGA

Upstream 100 bases:

>100_bases
GTCACCGGGGGCGAGAGGCAGTTTCGCTCGCCCGCGGCGTGTTTTTCATCAGGAGCGCAGCTCAACGAGTTTGGGGCGCA
CACCGGGAACGGAGATTTTC

Downstream 100 bases:

>100_bases
TCGCCCGCGATCGATTTTGGGGAGCGGGCTGCCGGCAACGGTCGGCCCGCTCCCTTCTTGACAATATCCCTGGGGACATA
TTCCATGACCAAGCGGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: Outer Membrane Lipoprotein; Serine/Threonine Protein Kinase; Cell Surface Receptor IPT/TIG Domain Protein; Secreted Protein; Drug/Metabolite Permease; Non-Specific Serine/Threonine Protein Kinase; Parallel Beta-Helix Repeat Protein

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MAAFARIHMVMLSGVACSILAACGADGVASPGEGVIVVPAPTPTPTPTPTPTPTPTGVTPAANCPTIAGADQLTDLGTIT
GNEGTWRNCGFPARFNSTTAIPKVAGVIYSLPGRVDVGTDQGPTEEAGDPADVTLTIDPGVTIFGATGVSFLAVNRGNKI
DAVGTPTQPIVFTGRGNVVGSATDNTSQLWGGVVLLGRAPITDCLAPAATPGTAACERNTEGATNALYGGATANDNSGRM
SYVQIRYSGFVLSANSELQGLTPSGVGSGTQIDHIQIHNSSDDGAEVFGGRVNMKHLVITGAEDDGLDTDVGYQGNIQYV
IGVQRAGGAVGDSMMEIDSDGNEEAIPRQRVALSNFTYIQRNNAAGNGAAIRIRGGADYMFANGLIVAPGIRCLRIDSVT
TVRAADPALDDQGPPRFESVSLQCNATPFRGSNGVTDAEVQAIFEAGTNNRSNYVPSLTNLFVNGATETGFTPFDAKTLN
AFFDTTAYVGAVRDANDSWYQGWTCNSATADFGTSSGSCTGIPTT

Sequences:

>Translated_525_residues
MAAFARIHMVMLSGVACSILAACGADGVASPGEGVIVVPAPTPTPTPTPTPTPTPTGVTPAANCPTIAGADQLTDLGTIT
GNEGTWRNCGFPARFNSTTAIPKVAGVIYSLPGRVDVGTDQGPTEEAGDPADVTLTIDPGVTIFGATGVSFLAVNRGNKI
DAVGTPTQPIVFTGRGNVVGSATDNTSQLWGGVVLLGRAPITDCLAPAATPGTAACERNTEGATNALYGGATANDNSGRM
SYVQIRYSGFVLSANSELQGLTPSGVGSGTQIDHIQIHNSSDDGAEVFGGRVNMKHLVITGAEDDGLDTDVGYQGNIQYV
IGVQRAGGAVGDSMMEIDSDGNEEAIPRQRVALSNFTYIQRNNAAGNGAAIRIRGGADYMFANGLIVAPGIRCLRIDSVT
TVRAADPALDDQGPPRFESVSLQCNATPFRGSNGVTDAEVQAIFEAGTNNRSNYVPSLTNLFVNGATETGFTPFDAKTLN
AFFDTTAYVGAVRDANDSWYQGWTCNSATADFGTSSGSCTGIPTT
>Mature_524_residues
AAFARIHMVMLSGVACSILAACGADGVASPGEGVIVVPAPTPTPTPTPTPTPTPTGVTPAANCPTIAGADQLTDLGTITG
NEGTWRNCGFPARFNSTTAIPKVAGVIYSLPGRVDVGTDQGPTEEAGDPADVTLTIDPGVTIFGATGVSFLAVNRGNKID
AVGTPTQPIVFTGRGNVVGSATDNTSQLWGGVVLLGRAPITDCLAPAATPGTAACERNTEGATNALYGGATANDNSGRMS
YVQIRYSGFVLSANSELQGLTPSGVGSGTQIDHIQIHNSSDDGAEVFGGRVNMKHLVITGAEDDGLDTDVGYQGNIQYVI
GVQRAGGAVGDSMMEIDSDGNEEAIPRQRVALSNFTYIQRNNAAGNGAAIRIRGGADYMFANGLIVAPGIRCLRIDSVTT
VRAADPALDDQGPPRFESVSLQCNATPFRGSNGVTDAEVQAIFEAGTNNRSNYVPSLTNLFVNGATETGFTPFDAKTLNA
FFDTTAYVGAVRDANDSWYQGWTCNSATADFGTSSGSCTGIPTT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53880; Mature: 53749

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00962 RIBOSOMAL_S2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAFARIHMVMLSGVACSILAACGADGVASPGEGVIVVPAPTPTPTPTPTPTPTPTGVTP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
AANCPTIAGADQLTDLGTITGNEGTWRNCGFPARFNSTTAIPKVAGVIYSLPGRVDVGTD
CCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCEECCCC
QGPTEEAGDPADVTLTIDPGVTIFGATGVSFLAVNRGNKIDAVGTPTQPIVFTGRGNVVG
CCCCCCCCCCCEEEEEECCCEEEEECCCEEEEEEECCCEEEECCCCCCCEEEECCCCEEE
SATDNTSQLWGGVVLLGRAPITDCLAPAATPGTAACERNTEGATNALYGGATANDNSGRM
CCCCCCHHHCCCEEEECCCCHHHHHCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCE
SYVQIRYSGFVLSANSELQGLTPSGVGSGTQIDHIQIHNSSDDGAEVFGGRVNMKHLVIT
EEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHCCCEEEEEEEEEE
GAEDDGLDTDVGYQGNIQYVIGVQRAGGAVGDSMMEIDSDGNEEAIPRQRVALSNFTYIQ
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHEECCCEEEEE
RNNAAGNGAAIRIRGGADYMFANGLIVAPGIRCLRIDSVTTVRAADPALDDQGPPRFESV
ECCCCCCCEEEEEECCCCEEEECCEEECCCCEEEEECCEEEEECCCCCCCCCCCCCCEEE
SLQCNATPFRGSNGVTDAEVQAIFEAGTNNRSNYVPSLTNLFVNGATETGFTPFDAKTLN
EEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCCCCHHHHH
AFFDTTAYVGAVRDANDSWYQGWTCNSATADFGTSSGSCTGIPTT
HHHHCHHHEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AAFARIHMVMLSGVACSILAACGADGVASPGEGVIVVPAPTPTPTPTPTPTPTPTGVTP
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
AANCPTIAGADQLTDLGTITGNEGTWRNCGFPARFNSTTAIPKVAGVIYSLPGRVDVGTD
CCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCEECCCC
QGPTEEAGDPADVTLTIDPGVTIFGATGVSFLAVNRGNKIDAVGTPTQPIVFTGRGNVVG
CCCCCCCCCCCEEEEEECCCEEEEECCCEEEEEEECCCEEEECCCCCCCEEEECCCCEEE
SATDNTSQLWGGVVLLGRAPITDCLAPAATPGTAACERNTEGATNALYGGATANDNSGRM
CCCCCCHHHCCCEEEECCCCHHHHHCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCE
SYVQIRYSGFVLSANSELQGLTPSGVGSGTQIDHIQIHNSSDDGAEVFGGRVNMKHLVIT
EEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHCCCEEEEEEEEEE
GAEDDGLDTDVGYQGNIQYVIGVQRAGGAVGDSMMEIDSDGNEEAIPRQRVALSNFTYIQ
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHEECCCEEEEE
RNNAAGNGAAIRIRGGADYMFANGLIVAPGIRCLRIDSVTTVRAADPALDDQGPPRFESV
ECCCCCCCEEEEEECCCCEEEECCEEECCCCEEEEECCEEEEECCCCCCCCCCCCCCEEE
SLQCNATPFRGSNGVTDAEVQAIFEAGTNNRSNYVPSLTNLFVNGATETGFTPFDAKTLN
EEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCCCCHHHHH
AFFDTTAYVGAVRDANDSWYQGWTCNSATADFGTSSGSCTGIPTT
HHHHCHHHEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA