Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485807
Identifier: 103485807
GI number: 103485807
Start: 316747
End: 318324
Strand: Direct
Name: 103485807
Synonym: Sala_0312
Alternate gene names: NA
Gene position: 316747-318324 (Clockwise)
Preceding gene: 103485806
Following gene: 103485808
Centisome position: 9.47
GC content: 67.36
Gene sequence:
>1578_bases ATGGCGGCTTTCGCACGCATTCATATGGTCATGCTCAGCGGCGTGGCCTGTTCCATTCTGGCCGCTTGCGGCGCCGACGG CGTGGCCTCGCCGGGCGAGGGCGTGATCGTCGTCCCCGCGCCGACCCCGACCCCGACCCCCACGCCCACGCCGACCCCGA CGCCCACCGGCGTCACCCCGGCCGCAAATTGCCCGACGATCGCCGGCGCCGACCAGCTCACCGACCTCGGCACGATCACC GGCAACGAAGGCACCTGGCGCAACTGCGGTTTCCCCGCGCGCTTCAATTCGACCACGGCGATCCCGAAGGTCGCCGGCGT GATTTACTCGCTGCCCGGCCGCGTCGATGTCGGCACCGACCAGGGTCCGACCGAGGAAGCGGGCGACCCCGCCGACGTCA CGCTGACGATTGATCCCGGCGTCACCATCTTTGGCGCGACGGGCGTGTCCTTCCTCGCCGTCAACCGCGGCAACAAGATC GACGCGGTCGGCACCCCGACCCAGCCGATCGTCTTCACCGGCCGCGGCAATGTTGTCGGCAGCGCGACCGACAACACGTC GCAGCTGTGGGGCGGTGTCGTCCTGCTCGGCCGCGCGCCGATCACCGACTGCCTTGCCCCCGCCGCGACCCCCGGCACCG CTGCGTGCGAACGCAACACCGAAGGCGCGACCAACGCGCTTTATGGCGGCGCCACCGCGAACGACAATTCGGGTCGCATG TCCTATGTCCAGATCCGCTATTCGGGCTTTGTCCTGTCGGCGAACAGCGAGCTTCAGGGCCTGACCCCCTCGGGCGTTGG TTCGGGCACCCAGATCGACCATATCCAGATTCACAACAGCTCGGACGATGGCGCCGAAGTGTTCGGCGGCCGGGTCAATA TGAAGCATCTCGTCATCACCGGCGCCGAGGATGACGGTCTCGACACCGACGTCGGTTATCAGGGCAATATCCAATATGTC ATCGGCGTCCAGCGCGCCGGCGGCGCGGTCGGCGACTCGATGATGGAAATCGACTCGGACGGCAACGAAGAGGCGATCCC GCGCCAGCGCGTCGCGCTGTCGAACTTCACCTATATCCAGCGCAACAATGCGGCGGGCAATGGCGCGGCGATCCGCATCC GCGGCGGCGCCGACTATATGTTCGCCAACGGCCTGATCGTCGCGCCGGGCATTCGCTGCCTCCGCATCGACAGCGTCACG ACCGTTCGCGCTGCCGATCCCGCGCTTGACGATCAGGGCCCGCCGCGCTTCGAATCGGTGTCGCTCCAGTGCAACGCGAC GCCCTTCCGCGGCTCGAACGGTGTCACCGATGCCGAGGTGCAGGCGATTTTCGAAGCCGGCACCAACAACCGGTCGAACT ATGTGCCCAGCCTGACCAACCTGTTCGTCAACGGGGCCACCGAAACCGGCTTCACGCCCTTCGACGCGAAGACGCTGAAC GCCTTCTTCGACACCACCGCCTATGTCGGCGCCGTCCGCGACGCCAACGACAGCTGGTACCAGGGCTGGACCTGCAACTC GGCGACGGCGGACTTCGGCACGTCGAGCGGCAGCTGCACCGGCATCCCGACGACCTGA
Upstream 100 bases:
>100_bases GTCACCGGGGGCGAGAGGCAGTTTCGCTCGCCCGCGGCGTGTTTTTCATCAGGAGCGCAGCTCAACGAGTTTGGGGCGCA CACCGGGAACGGAGATTTTC
Downstream 100 bases:
>100_bases TCGCCCGCGATCGATTTTGGGGAGCGGGCTGCCGGCAACGGTCGGCCCGCTCCCTTCTTGACAATATCCCTGGGGACATA TTCCATGACCAAGCGGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Lipoprotein; Serine/Threonine Protein Kinase; Cell Surface Receptor IPT/TIG Domain Protein; Secreted Protein; Drug/Metabolite Permease; Non-Specific Serine/Threonine Protein Kinase; Parallel Beta-Helix Repeat Protein
Number of amino acids: Translated: 525; Mature: 524
Protein sequence:
>525_residues MAAFARIHMVMLSGVACSILAACGADGVASPGEGVIVVPAPTPTPTPTPTPTPTPTGVTPAANCPTIAGADQLTDLGTIT GNEGTWRNCGFPARFNSTTAIPKVAGVIYSLPGRVDVGTDQGPTEEAGDPADVTLTIDPGVTIFGATGVSFLAVNRGNKI DAVGTPTQPIVFTGRGNVVGSATDNTSQLWGGVVLLGRAPITDCLAPAATPGTAACERNTEGATNALYGGATANDNSGRM SYVQIRYSGFVLSANSELQGLTPSGVGSGTQIDHIQIHNSSDDGAEVFGGRVNMKHLVITGAEDDGLDTDVGYQGNIQYV IGVQRAGGAVGDSMMEIDSDGNEEAIPRQRVALSNFTYIQRNNAAGNGAAIRIRGGADYMFANGLIVAPGIRCLRIDSVT TVRAADPALDDQGPPRFESVSLQCNATPFRGSNGVTDAEVQAIFEAGTNNRSNYVPSLTNLFVNGATETGFTPFDAKTLN AFFDTTAYVGAVRDANDSWYQGWTCNSATADFGTSSGSCTGIPTT
Sequences:
>Translated_525_residues MAAFARIHMVMLSGVACSILAACGADGVASPGEGVIVVPAPTPTPTPTPTPTPTPTGVTPAANCPTIAGADQLTDLGTIT GNEGTWRNCGFPARFNSTTAIPKVAGVIYSLPGRVDVGTDQGPTEEAGDPADVTLTIDPGVTIFGATGVSFLAVNRGNKI DAVGTPTQPIVFTGRGNVVGSATDNTSQLWGGVVLLGRAPITDCLAPAATPGTAACERNTEGATNALYGGATANDNSGRM SYVQIRYSGFVLSANSELQGLTPSGVGSGTQIDHIQIHNSSDDGAEVFGGRVNMKHLVITGAEDDGLDTDVGYQGNIQYV IGVQRAGGAVGDSMMEIDSDGNEEAIPRQRVALSNFTYIQRNNAAGNGAAIRIRGGADYMFANGLIVAPGIRCLRIDSVT TVRAADPALDDQGPPRFESVSLQCNATPFRGSNGVTDAEVQAIFEAGTNNRSNYVPSLTNLFVNGATETGFTPFDAKTLN AFFDTTAYVGAVRDANDSWYQGWTCNSATADFGTSSGSCTGIPTT >Mature_524_residues AAFARIHMVMLSGVACSILAACGADGVASPGEGVIVVPAPTPTPTPTPTPTPTPTGVTPAANCPTIAGADQLTDLGTITG NEGTWRNCGFPARFNSTTAIPKVAGVIYSLPGRVDVGTDQGPTEEAGDPADVTLTIDPGVTIFGATGVSFLAVNRGNKID AVGTPTQPIVFTGRGNVVGSATDNTSQLWGGVVLLGRAPITDCLAPAATPGTAACERNTEGATNALYGGATANDNSGRMS YVQIRYSGFVLSANSELQGLTPSGVGSGTQIDHIQIHNSSDDGAEVFGGRVNMKHLVITGAEDDGLDTDVGYQGNIQYVI GVQRAGGAVGDSMMEIDSDGNEEAIPRQRVALSNFTYIQRNNAAGNGAAIRIRGGADYMFANGLIVAPGIRCLRIDSVTT VRAADPALDDQGPPRFESVSLQCNATPFRGSNGVTDAEVQAIFEAGTNNRSNYVPSLTNLFVNGATETGFTPFDAKTLNA FFDTTAYVGAVRDANDSWYQGWTCNSATADFGTSSGSCTGIPTT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53880; Mature: 53749
Theoretical pI: Translated: 4.25; Mature: 4.25
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00962 RIBOSOMAL_S2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAFARIHMVMLSGVACSILAACGADGVASPGEGVIVVPAPTPTPTPTPTPTPTPTGVTP CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC AANCPTIAGADQLTDLGTITGNEGTWRNCGFPARFNSTTAIPKVAGVIYSLPGRVDVGTD CCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCEECCCC QGPTEEAGDPADVTLTIDPGVTIFGATGVSFLAVNRGNKIDAVGTPTQPIVFTGRGNVVG CCCCCCCCCCCEEEEEECCCEEEEECCCEEEEEEECCCEEEECCCCCCCEEEECCCCEEE SATDNTSQLWGGVVLLGRAPITDCLAPAATPGTAACERNTEGATNALYGGATANDNSGRM CCCCCCHHHCCCEEEECCCCHHHHHCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCE SYVQIRYSGFVLSANSELQGLTPSGVGSGTQIDHIQIHNSSDDGAEVFGGRVNMKHLVIT EEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHCCCEEEEEEEEEE GAEDDGLDTDVGYQGNIQYVIGVQRAGGAVGDSMMEIDSDGNEEAIPRQRVALSNFTYIQ CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHEECCCEEEEE RNNAAGNGAAIRIRGGADYMFANGLIVAPGIRCLRIDSVTTVRAADPALDDQGPPRFESV ECCCCCCCEEEEEECCCCEEEECCEEECCCCEEEEECCEEEEECCCCCCCCCCCCCCEEE SLQCNATPFRGSNGVTDAEVQAIFEAGTNNRSNYVPSLTNLFVNGATETGFTPFDAKTLN EEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCCCCHHHHH AFFDTTAYVGAVRDANDSWYQGWTCNSATADFGTSSGSCTGIPTT HHHHCHHHEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AAFARIHMVMLSGVACSILAACGADGVASPGEGVIVVPAPTPTPTPTPTPTPTPTGVTP CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC AANCPTIAGADQLTDLGTITGNEGTWRNCGFPARFNSTTAIPKVAGVIYSLPGRVDVGTD CCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCEECCCC QGPTEEAGDPADVTLTIDPGVTIFGATGVSFLAVNRGNKIDAVGTPTQPIVFTGRGNVVG CCCCCCCCCCCEEEEEECCCEEEEECCCEEEEEEECCCEEEECCCCCCCEEEECCCCEEE SATDNTSQLWGGVVLLGRAPITDCLAPAATPGTAACERNTEGATNALYGGATANDNSGRM CCCCCCHHHCCCEEEECCCCHHHHHCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCE SYVQIRYSGFVLSANSELQGLTPSGVGSGTQIDHIQIHNSSDDGAEVFGGRVNMKHLVIT EEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHCCCEEEEEEEEEE GAEDDGLDTDVGYQGNIQYVIGVQRAGGAVGDSMMEIDSDGNEEAIPRQRVALSNFTYIQ CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHEECCCEEEEE RNNAAGNGAAIRIRGGADYMFANGLIVAPGIRCLRIDSVTTVRAADPALDDQGPPRFESV ECCCCCCCEEEEEECCCCEEEECCEEECCCCEEEEECCEEEEECCCCCCCCCCCCCCEEE SLQCNATPFRGSNGVTDAEVQAIFEAGTNNRSNYVPSLTNLFVNGATETGFTPFDAKTLN EEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCCCCHHHHH AFFDTTAYVGAVRDANDSWYQGWTCNSATADFGTSSGSCTGIPTT HHHHCHHHEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA