Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is fepA [C]
Identifier: 103485800
GI number: 103485800
Start: 306935
End: 309295
Strand: Direct
Name: fepA [C]
Synonym: Sala_0305
Alternate gene names: 103485800
Gene position: 306935-309295 (Clockwise)
Preceding gene: 103485799
Following gene: 103485801
Centisome position: 9.18
GC content: 64.17
Gene sequence:
>2361_bases ATGTTGAAGACCACCCACCTGTTGTCGTCGATTGCGCTTTTCGCGCTGCCGATGGCCGCGCACGCTCAGGAAGCGCCTCT CGACGATGCGGCGCCCGCTGACGAGGAAATCGTCGTCACCGGCACCGCCGGCGGCGGCATCAGCCGTCAGGACGCGGCGT TCGCGATCACCAGCATCAATGCCGAGGCGATCGAGCGCGCGGCGCCGAACAGCACCGCCGACCTGTTCAAGGTCATCCCC GGTGTGTCGGCCGAAAGTTCGGGCGGCCAGAATGGCGCCAACATCTTCGTGCGCGGCTATCCGTCGGGCGGCGACGCCGA GTTCGTCACGCTGACGGTGCAGGGCGTGCCCTTTTTCTCGCCGCCGACCTTGTCCTTCCTCGAAAACACGCAGCTGATCC GCATCGACGAGACGATCGAGCGCGTCGAGGCTGTGCGCGGCGGCACCGGCGCATTGTTCGGTAACGGCCAGCCCGGCCTG ACCGTCAACTTCGTCCAGAAAGAGGGCGGGCGCGATTTCGAGGGGCTCGTGAAAGCCAGCATCACCGATTTTGGCGACCT GCGCGGCGACATGCTGCTGTCAGGGCCGCTCGGCGAGTCGACCAGCTTCATGATCGGCGGCTATTATGCGAGCGGCAACG GCATCCGCGACCCGCGCTTCACCGCCGAAAAGGGTGGACAGATCACCGCCAATGTCCGGCACGACATGGACCGCGGCTCG ATCCTCGTCTTTGCGCGCTACCTCAACGATCGCGGCCAGTGGCTGCTGCCGATCCCGGTGGTGCGCGACGGCGACAAGGT GCGCCAGTTCGGCAATATCGACCCCGGCACCGGCGTGCTTGCGGGGCCTGAAACGCGATTGAGCCTGCTGCCCGACGGGA CGCGCGCCGACCTCGCCGACGGGCGCGGCGCCGACCTTGTCAACCTTGGCACCAATTTCGATTATGAGATCGGCGACGGG CTGCAATTGCGCTACCGCGCGAGCTACCTCAAGGGCGACGCCGACACGACGGGTCTCGTGCCCGCGAGCACCGCGACCAG CGCCGATGCCTATGCCGCCTCGCTCGGCAGCACGATCGGCAGCCTCACCTATGTCAACGGTGGGCAGGCGGTCGCGGGCA GCCAGCCGGTGATCCGCGCGGGCACCTGGATCGTGCGCAAGCAGATCGAGGATTTCACCAACGACCTTGCGGTCGAATGG GACAGCGGCAACAACAAGTTCACCGTCGGCGCCTATTATTCGGACTTCTCGTCGAACGACCAGTGGAACCTCGGCAACGT CCAGCTGCTCACCGCCGAAACGAACGCGCGCCTTCTGAACCTCGTGCTCGCCAACGGACAGGTCGCGACCGACCGCGGCT TCACACAGGGAAGCTTTTTCAACGTCAACGCCGCCTATGACGGGCGCGAATATGCCTTTTATGCGGTCGACGAGTTTCAG GTGACGCCCGAGCTGCGGCTCGACGCGGGCATCCGTTACCAGCATTACAAGGCGAGCGGGACGCTGGAGAACAATGATTT TGGCGTGAATGTCGATGGCGATCCCGACACGCTCTACGACAATGGCACCGCGGTGCTCAACGGCACCTTCCGCAATATCG CGTACAAGAAGGGCTCATGGTCGTGGACGGTCGGCGCCAATTACGACATCTCCTCGTCGGTTGGCGTCTATGCGCGTTAC AATCGCGGCAACACCAACCCCTTCTTCGACAATCTGCGCGACGGGATTTTCGTGTCGCCGCGCGTCGACAATTATGAAGG CGGGGTGAAAGTGCGCACCGATCTGCTCTCGCTCTATGCCACCCTGTTTCACACGCGATTCCGCGGGCTGGCGACGACTG TGATCACCAATGGCGCGCCGATCGCGTCGATCGGGGGGGCACGCAGCACCGGGGTCGAGATCGAAGGACAGATTCGCCCG ATCGACAATGTCTCGATCGCCTTTTCGGGCACCTGGCTCGATGCGAAATATCGGAACTTCTTCGCCGATGGCGGGGCGAC CGACCTGTCGGGCAACCGGGTGCAACGCCAGCCGAAGTGGCAGTGGCGCGTGACCCCGGCCTATGACATTCCCTTCGGCA ACGACGGCAAGGTCTCGCTCTATTCGACCTTCACCTATGTCGGCGACCGTTTCTCCGACACCGCGAACACCCAGTCGCTG CCCAATTATTTCAAGATCGACGCCGGGATCAGCGTCGATGTGAACCAGGCGCTCAGCTTTGCGGTGACCGCGGACAATCT GACCGACAAGGTCGGGCTGACCGAAGGCGATCCGCGCCAGCTCGGCGCCGGCAGCCAGGTCGTCAACGCGCGGCCGATCC TTGGCCGCTCGTTCCGCTTCAGCGCGGCGTACAGGTTCTGA
Upstream 100 bases:
>100_bases CCATCGGCGACCTCACGCTCGGTCAGATCCTGTCGGCAGAACAGGAAACGGCCGCGCGCGGGCGCCGGACAGGCAGAACA GTCAATGCGGAGGATTTGTC
Downstream 100 bases:
>100_bases GTTCATCCCTCCCTGGGTGGCCGCAGCCTCTTTGCGGCCACCCCTCTTTTTGGGGGAGGTGAGGCGCAACCGACAAAATC CTCCCCATCGCAAGTCGATG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Outer Membrane Receptor Protein; Siderophore Receptor Protein; NB-Dependent Siderophore Receptor; Nb-Dependent Receptor Plug
Number of amino acids: Translated: 786; Mature: 786
Protein sequence:
>786_residues MLKTTHLLSSIALFALPMAAHAQEAPLDDAAPADEEIVVTGTAGGGISRQDAAFAITSINAEAIERAAPNSTADLFKVIP GVSAESSGGQNGANIFVRGYPSGGDAEFVTLTVQGVPFFSPPTLSFLENTQLIRIDETIERVEAVRGGTGALFGNGQPGL TVNFVQKEGGRDFEGLVKASITDFGDLRGDMLLSGPLGESTSFMIGGYYASGNGIRDPRFTAEKGGQITANVRHDMDRGS ILVFARYLNDRGQWLLPIPVVRDGDKVRQFGNIDPGTGVLAGPETRLSLLPDGTRADLADGRGADLVNLGTNFDYEIGDG LQLRYRASYLKGDADTTGLVPASTATSADAYAASLGSTIGSLTYVNGGQAVAGSQPVIRAGTWIVRKQIEDFTNDLAVEW DSGNNKFTVGAYYSDFSSNDQWNLGNVQLLTAETNARLLNLVLANGQVATDRGFTQGSFFNVNAAYDGREYAFYAVDEFQ VTPELRLDAGIRYQHYKASGTLENNDFGVNVDGDPDTLYDNGTAVLNGTFRNIAYKKGSWSWTVGANYDISSSVGVYARY NRGNTNPFFDNLRDGIFVSPRVDNYEGGVKVRTDLLSLYATLFHTRFRGLATTVITNGAPIASIGGARSTGVEIEGQIRP IDNVSIAFSGTWLDAKYRNFFADGGATDLSGNRVQRQPKWQWRVTPAYDIPFGNDGKVSLYSTFTYVGDRFSDTANTQSL PNYFKIDAGISVDVNQALSFAVTADNLTDKVGLTEGDPRQLGAGSQVVNARPILGRSFRFSAAYRF
Sequences:
>Translated_786_residues MLKTTHLLSSIALFALPMAAHAQEAPLDDAAPADEEIVVTGTAGGGISRQDAAFAITSINAEAIERAAPNSTADLFKVIP GVSAESSGGQNGANIFVRGYPSGGDAEFVTLTVQGVPFFSPPTLSFLENTQLIRIDETIERVEAVRGGTGALFGNGQPGL TVNFVQKEGGRDFEGLVKASITDFGDLRGDMLLSGPLGESTSFMIGGYYASGNGIRDPRFTAEKGGQITANVRHDMDRGS ILVFARYLNDRGQWLLPIPVVRDGDKVRQFGNIDPGTGVLAGPETRLSLLPDGTRADLADGRGADLVNLGTNFDYEIGDG LQLRYRASYLKGDADTTGLVPASTATSADAYAASLGSTIGSLTYVNGGQAVAGSQPVIRAGTWIVRKQIEDFTNDLAVEW DSGNNKFTVGAYYSDFSSNDQWNLGNVQLLTAETNARLLNLVLANGQVATDRGFTQGSFFNVNAAYDGREYAFYAVDEFQ VTPELRLDAGIRYQHYKASGTLENNDFGVNVDGDPDTLYDNGTAVLNGTFRNIAYKKGSWSWTVGANYDISSSVGVYARY NRGNTNPFFDNLRDGIFVSPRVDNYEGGVKVRTDLLSLYATLFHTRFRGLATTVITNGAPIASIGGARSTGVEIEGQIRP IDNVSIAFSGTWLDAKYRNFFADGGATDLSGNRVQRQPKWQWRVTPAYDIPFGNDGKVSLYSTFTYVGDRFSDTANTQSL PNYFKIDAGISVDVNQALSFAVTADNLTDKVGLTEGDPRQLGAGSQVVNARPILGRSFRFSAAYRF >Mature_786_residues MLKTTHLLSSIALFALPMAAHAQEAPLDDAAPADEEIVVTGTAGGGISRQDAAFAITSINAEAIERAAPNSTADLFKVIP GVSAESSGGQNGANIFVRGYPSGGDAEFVTLTVQGVPFFSPPTLSFLENTQLIRIDETIERVEAVRGGTGALFGNGQPGL TVNFVQKEGGRDFEGLVKASITDFGDLRGDMLLSGPLGESTSFMIGGYYASGNGIRDPRFTAEKGGQITANVRHDMDRGS ILVFARYLNDRGQWLLPIPVVRDGDKVRQFGNIDPGTGVLAGPETRLSLLPDGTRADLADGRGADLVNLGTNFDYEIGDG LQLRYRASYLKGDADTTGLVPASTATSADAYAASLGSTIGSLTYVNGGQAVAGSQPVIRAGTWIVRKQIEDFTNDLAVEW DSGNNKFTVGAYYSDFSSNDQWNLGNVQLLTAETNARLLNLVLANGQVATDRGFTQGSFFNVNAAYDGREYAFYAVDEFQ VTPELRLDAGIRYQHYKASGTLENNDFGVNVDGDPDTLYDNGTAVLNGTFRNIAYKKGSWSWTVGANYDISSSVGVYARY NRGNTNPFFDNLRDGIFVSPRVDNYEGGVKVRTDLLSLYATLFHTRFRGLATTVITNGAPIASIGGARSTGVEIEGQIRP IDNVSIAFSGTWLDAKYRNFFADGGATDLSGNRVQRQPKWQWRVTPAYDIPFGNDGKVSLYSTFTYVGDRFSDTANTQSL PNYFKIDAGISVDVNQALSFAVTADNLTDKVGLTEGDPRQLGAGSQVVNARPILGRSFRFSAAYRF
Specific function: This Protein Is Involved In The Initial Step Of Iron Uptake By Binding Ferrienterobactin (Fe-Ent), An Iron Chelatin Siderophore That Allows E.Coli To Extract Iron From The Environment. Fepa Also Acts As A Receptor For Colicins B And D. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84376; Mature: 84376
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKTTHLLSSIALFALPMAAHAQEAPLDDAAPADEEIVVTGTAGGGISRQDAAFAITSIN CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECC AEAIERAAPNSTADLFKVIPGVSAESSGGQNGANIFVRGYPSGGDAEFVTLTVQGVPFFS HHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCC PPTLSFLENTQLIRIDETIERVEAVRGGTGALFGNGQPGLTVNFVQKEGGRDFEGLVKAS CCCHHHHCCCEEEEEHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCCHHHHHHHH ITDFGDLRGDMLLSGPLGESTSFMIGGYYASGNGIRDPRFTAEKGGQITANVRHDMDRGS CCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCEECCCCCEEEEEEECCCCCCC ILVFARYLNDRGQWLLPIPVVRDGDKVRQFGNIDPGTGVLAGPETRLSLLPDGTRADLAD EEEEEEECCCCCCEEEEECEECCCHHHHHCCCCCCCCCEEECCCCEEEECCCCCCCCCCC GRGADLVNLGTNFDYEIGDGLQLRYRASYLKGDADTTGLVPASTATSADAYAASLGSTIG CCCCCEEECCCCCCEECCCCEEEEEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHC SLTYVNGGQAVAGSQPVIRAGTWIVRKQIEDFTNDLAVEWDSGNNKFTVGAYYSDFSSND EEEEECCCCEECCCCCEEECCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCC QWNLGNVQLLTAETNARLLNLVLANGQVATDRGFTQGSFFNVNAAYDGREYAFYAVDEFQ CCCCCCEEEEEECCCCEEEEEEEECCEEECCCCCCCCCEEEEEEEECCCEEEEEEEEEEE VTPELRLDAGIRYQHYKASGTLENNDFGVNVDGDPDTLYDNGTAVLNGTFRNIAYKKGSW ECCCEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCEECCCEEEEECCCCEEEEECCCE SWTVGANYDISSSVGVYARYNRGNTNPFFDNLRDGIFVSPRVDNYEGGVKVRTDLLSLYA EEEECCCCCCCCCCCEEEEECCCCCCCHHHHCCCCEEECCCCCCCCCCEEEHHHHHHHHH TLFHTRFRGLATTVITNGAPIASIGGARSTGVEIEGQIRPIDNVSIAFSGTWLDAKYRNF HHHHHHHHHEEEEEEECCCCEEECCCCCCCCEEEEEEEEECCCEEEEEEEEEECCHHHHE FADGGATDLSGNRVQRQPKWQWRVTPAYDIPFGNDGKVSLYSTFTYVGDRFSDTANTQSL ECCCCCCCCCCCCCCCCCCEEEEEECEEECCCCCCCCEEEEEEEEHHCCCCCCCCCCCCC PNYFKIDAGISVDVNQALSFAVTADNLTDKVGLTEGDPRQLGAGSQVVNARPILGRSFRF CCEEEECCCCEEEHHHCEEEEEEECCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCEEE SAAYRF EEEECC >Mature Secondary Structure MLKTTHLLSSIALFALPMAAHAQEAPLDDAAPADEEIVVTGTAGGGISRQDAAFAITSIN CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECC AEAIERAAPNSTADLFKVIPGVSAESSGGQNGANIFVRGYPSGGDAEFVTLTVQGVPFFS HHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCC PPTLSFLENTQLIRIDETIERVEAVRGGTGALFGNGQPGLTVNFVQKEGGRDFEGLVKAS CCCHHHHCCCEEEEEHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCCHHHHHHHH ITDFGDLRGDMLLSGPLGESTSFMIGGYYASGNGIRDPRFTAEKGGQITANVRHDMDRGS CCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCEECCCCCEEEEEEECCCCCCC ILVFARYLNDRGQWLLPIPVVRDGDKVRQFGNIDPGTGVLAGPETRLSLLPDGTRADLAD EEEEEEECCCCCCEEEEECEECCCHHHHHCCCCCCCCCEEECCCCEEEECCCCCCCCCCC GRGADLVNLGTNFDYEIGDGLQLRYRASYLKGDADTTGLVPASTATSADAYAASLGSTIG CCCCCEEECCCCCCEECCCCEEEEEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHC SLTYVNGGQAVAGSQPVIRAGTWIVRKQIEDFTNDLAVEWDSGNNKFTVGAYYSDFSSND EEEEECCCCEECCCCCEEECCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCC QWNLGNVQLLTAETNARLLNLVLANGQVATDRGFTQGSFFNVNAAYDGREYAFYAVDEFQ CCCCCCEEEEEECCCCEEEEEEEECCEEECCCCCCCCCEEEEEEEECCCEEEEEEEEEEE VTPELRLDAGIRYQHYKASGTLENNDFGVNVDGDPDTLYDNGTAVLNGTFRNIAYKKGSW ECCCEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCEECCCEEEEECCCCEEEEECCCE SWTVGANYDISSSVGVYARYNRGNTNPFFDNLRDGIFVSPRVDNYEGGVKVRTDLLSLYA EEEECCCCCCCCCCCEEEEECCCCCCCHHHHCCCCEEECCCCCCCCCCEEEHHHHHHHHH TLFHTRFRGLATTVITNGAPIASIGGARSTGVEIEGQIRPIDNVSIAFSGTWLDAKYRNF HHHHHHHHHEEEEEEECCCCEEECCCCCCCCEEEEEEEEECCCEEEEEEEEEECCHHHHE FADGGATDLSGNRVQRQPKWQWRVTPAYDIPFGNDGKVSLYSTFTYVGDRFSDTANTQSL ECCCCCCCCCCCCCCCCCCEEEEEECEEECCCCCCCCEEEEEEEEHHCCCCCCCCCCCCC PNYFKIDAGISVDVNQALSFAVTADNLTDKVGLTEGDPRQLGAGSQVVNARPILGRSFRF CCEEEECCCCEEEHHHCEEEEEEECCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCEEE SAAYRF EEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA