Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485801
Identifier: 103485801
GI number: 103485801
Start: 309459
End: 310688
Strand: Direct
Name: 103485801
Synonym: Sala_0306
Alternate gene names: NA
Gene position: 309459-310688 (Clockwise)
Preceding gene: 103485800
Following gene: 103485802
Centisome position: 9.25
GC content: 67.07
Gene sequence:
>1230_bases ATGGCCCGCACCCGACTGATCGCCGCGATGATCCTGACCTATGTTGGCTTTGCGATGCTGCTCAACAGCGTCGGGACGGT GATCCTCCAGTCGATTTCCAGCTTTGGCGTCACCAAGCCGCAGGCGAGCACGCTGGAGGGGTTCAAGGACATCACGATCG CGCTCGTGTCATTCGCGACGGCCAGCTATCTCGCGCGCATCGGCCTGCGCAAGGCGCTGATCGGCGCGCTGCTGCTTGCG ATCGCGGCCTGTCTCGTGATGCCGATGCTCGGCAGCTTCGGGGCGGCGCAGCTGCATTTCGCGATGGTCGGCGCTGCCTT TGCCGTCGCCAAGGTCGCGGTCTATTCGATGATCGGCTTCGTCACCGCCGGACCGCGCCAGCACGCCAGCCTGACCAGCC TGATCGAGGGCATGTTCATGCTCGGCGTGCTCGCCTCCTACTGGGTGTTCAGCGCCTTCATCGATCCCACCGGGCTGCGC TGGCTGAATGCCTATTGGGTGCTCGCGGGCATCGTTGCGCTTGCGCTTGCGTTGCTGCTCTCGTCGCGCGTCGACGAGGC GCCGGCGGGCGAAGAGCCAGCGGTACCCGAGGCGGCGCCCTTCCGCGCGATGCTGCGCCTCGCGGCGCTGCCGCTGGTGC TCGTGTTCGTGCTCTGCGCTTTCGTTTTCGTCGTCATCGAACAGGGGATCGGCACCTGGCTGCCGACCTTCAACAACGAG GTGCTGCACCTGCCGGCGCAGATGAGTGTGCAGGCGGCCAGCCTGTTCGCGGCGTGTATCGCGCTCGGCCGTTTTGGCGC GGGGGCGGTGATGGCGCGGTTCGACTGGTATCCGGTGCTGAACGCCTGCCTGATCCTGCTCGCGGCGCTCATCATCCTCG TCCTGCCGCTCGCCGACGGGCTGTCGCCGCGGCCGATCGCAGGGTGGGGCGATGCGCCGGTGGCGGCCTTCCTGTTTCCG CTCATCGGCTTTGCGCTCGCGCCCATCTATCCGACGATCATCTCGGTGATGCTGAGCGCGATGCCGGGCCGCCAGCACCC GCCGCTGATGGGGCTGGTCGTCGTCTTCTCGGCGCTCGGCGGGACGACGGGGTCGGTGATCACCGGCCAGCTCTTCGCGC ATCTCGACGGGCGCACCGCCTTTACGCTGATGCTCGTGCCGACCGCGATTCTCGGCATCGGGCTGTTTCTGTTGCGGCGG CAGATCGCGGTAAAAGACACTGCGAGCTAG
Upstream 100 bases:
>100_bases GCGCAACCGACAAAATCCTCCCCATCGCAAGTCGATGGGGAGGATCAGGCGGCCCTACCGCACCCGATACATTCGCCTCC GTCTCGCCTAAGGACATGCC
Downstream 100 bases:
>100_bases GGTCAGGACCCATTAATTCCCCGTTCGAGGTTTGAAGCGATTTTGCTCAGGGCGAGGAGGAAAGGCGCAGGAATATGGAC ATATTTCAAGACTTTTCGAC
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Family Transporter; Facilitator Superfamily Transporter; Transporter MFS Superfamily; Facilitator Superfamily Permease
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MARTRLIAAMILTYVGFAMLLNSVGTVILQSISSFGVTKPQASTLEGFKDITIALVSFATASYLARIGLRKALIGALLLA IAACLVMPMLGSFGAAQLHFAMVGAAFAVAKVAVYSMIGFVTAGPRQHASLTSLIEGMFMLGVLASYWVFSAFIDPTGLR WLNAYWVLAGIVALALALLLSSRVDEAPAGEEPAVPEAAPFRAMLRLAALPLVLVFVLCAFVFVVIEQGIGTWLPTFNNE VLHLPAQMSVQAASLFAACIALGRFGAGAVMARFDWYPVLNACLILLAALIILVLPLADGLSPRPIAGWGDAPVAAFLFP LIGFALAPIYPTIISVMLSAMPGRQHPPLMGLVVVFSALGGTTGSVITGQLFAHLDGRTAFTLMLVPTAILGIGLFLLRR QIAVKDTAS
Sequences:
>Translated_409_residues MARTRLIAAMILTYVGFAMLLNSVGTVILQSISSFGVTKPQASTLEGFKDITIALVSFATASYLARIGLRKALIGALLLA IAACLVMPMLGSFGAAQLHFAMVGAAFAVAKVAVYSMIGFVTAGPRQHASLTSLIEGMFMLGVLASYWVFSAFIDPTGLR WLNAYWVLAGIVALALALLLSSRVDEAPAGEEPAVPEAAPFRAMLRLAALPLVLVFVLCAFVFVVIEQGIGTWLPTFNNE VLHLPAQMSVQAASLFAACIALGRFGAGAVMARFDWYPVLNACLILLAALIILVLPLADGLSPRPIAGWGDAPVAAFLFP LIGFALAPIYPTIISVMLSAMPGRQHPPLMGLVVVFSALGGTTGSVITGQLFAHLDGRTAFTLMLVPTAILGIGLFLLRR QIAVKDTAS >Mature_408_residues ARTRLIAAMILTYVGFAMLLNSVGTVILQSISSFGVTKPQASTLEGFKDITIALVSFATASYLARIGLRKALIGALLLAI AACLVMPMLGSFGAAQLHFAMVGAAFAVAKVAVYSMIGFVTAGPRQHASLTSLIEGMFMLGVLASYWVFSAFIDPTGLRW LNAYWVLAGIVALALALLLSSRVDEAPAGEEPAVPEAAPFRAMLRLAALPLVLVFVLCAFVFVVIEQGIGTWLPTFNNEV LHLPAQMSVQAASLFAACIALGRFGAGAVMARFDWYPVLNACLILLAALIILVLPLADGLSPRPIAGWGDAPVAAFLFPL IGFALAPIYPTIISVMLSAMPGRQHPPLMGLVVVFSALGGTTGSVITGQLFAHLDGRTAFTLMLVPTAILGIGLFLLRRQ IAVKDTAS
Specific function: Unknown
COG id: COG0738
COG function: function code G; Fucose permease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43003; Mature: 42872
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTRLIAAMILTYVGFAMLLNSVGTVILQSISSFGVTKPQASTLEGFKDITIALVSFAT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH ASYLARIGLRKALIGALLLAIAACLVMPMLGSFGAAQLHFAMVGAAFAVAKVAVYSMIGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VTAGPRQHASLTSLIEGMFMLGVLASYWVFSAFIDPTGLRWLNAYWVLAGIVALALALLL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH SSRVDEAPAGEEPAVPEAAPFRAMLRLAALPLVLVFVLCAFVFVVIEQGIGTWLPTFNNE HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC VLHLPAQMSVQAASLFAACIALGRFGAGAVMARFDWYPVLNACLILLAALIILVLPLADG EEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LSPRPIAGWGDAPVAAFLFPLIGFALAPIYPTIISVMLSAMPGRQHPPLMGLVVVFSALG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC GTTGSVITGQLFAHLDGRTAFTLMLVPTAILGIGLFLLRRQIAVKDTAS CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ARTRLIAAMILTYVGFAMLLNSVGTVILQSISSFGVTKPQASTLEGFKDITIALVSFAT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH ASYLARIGLRKALIGALLLAIAACLVMPMLGSFGAAQLHFAMVGAAFAVAKVAVYSMIGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VTAGPRQHASLTSLIEGMFMLGVLASYWVFSAFIDPTGLRWLNAYWVLAGIVALALALLL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH SSRVDEAPAGEEPAVPEAAPFRAMLRLAALPLVLVFVLCAFVFVVIEQGIGTWLPTFNNE HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC VLHLPAQMSVQAASLFAACIALGRFGAGAVMARFDWYPVLNACLILLAALIILVLPLADG EEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LSPRPIAGWGDAPVAAFLFPLIGFALAPIYPTIISVMLSAMPGRQHPPLMGLVVVFSALG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC GTTGSVITGQLFAHLDGRTAFTLMLVPTAILGIGLFLLRRQIAVKDTAS CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA