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The map label for this gene is sodB [H]

Identifier: 103485786

GI number: 103485786

Start: 289605

End: 290231

Strand: Direct

Name: sodB [H]

Synonym: Sala_0291

Alternate gene names: 103485786

Gene position: 289605-290231 (Clockwise)

Preceding gene: 103485785

Following gene: 103485787

Centisome position: 8.66

GC content: 61.56

Gene sequence:

>627_bases
ATGGAGACTGCCATGACGATCGCCCATCCTCCCCTCCCATACGCCCAGGACGCGCTCGCGCCGCATATCTCGGCCGACAC
GCTGGCGACGCACCATGGCAAGCATCACAAGGCCTATGTCGACAAGGTCAACGCCGCCATCGAAGGCACCGAGCTTGCGG
ACAAGAGCCTCGAGGAAATCATCCACCATGCCGAAGGGTCGGGCAACAAGGGCCTGTTCAACAACAGCGCGCAGTCGTGG
AACCACGCCTTTTACTGGAACAGCTTGAACCCGACGAAGACCGAACCGGCGGGCGACCTGCTCGCCGCGATCGAACGCGA
TTTCGGTTCGCTGGGCGAACTCAAGAAAAAACTGAAGGACACCGCGGTCAACCATTTCGCGTCGGGCTGGGCGTGGCTCA
TCGCCCGTGACGGCACGCTGTCGGTCACCGACACGCACGACGCGGGCACCGAACTGGTCGCGGGCATCAAGCCGCTGCTG
GTGATCGACGTGTGGGAACATGCCTATTACATCGATCGCAAAAATCTGCGCCCCGCCTATGTCGACGCGGTGGTCGACGA
ACTGCTCAACTGGGATTTCGCTGCGGAAAATTACGCCCGCGAGGGCAGCTGGACCTATCCGTCGTAA

Upstream 100 bases:

>100_bases
TGCTCCTCGCAATGACGGGACTTGCGGAAATTTCCCCGTCACGGGGTTGCAACCCCGTGTCCCGATACCGAGTTAGAGGC
CGCAAACCCCTCAAAACAAA

Downstream 100 bases:

>100_bases
CGAGCGGCGTCGCGAGCGAAGCGAAGCAATCTCCAGCTCGAAGCCCCGCGAAAGGCACAAAGCAGGAGATTGCCACGTCG
CTTCGCTCCTCGCGATGACG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
METAMTIAHPPLPYAQDALAPHISADTLATHHGKHHKAYVDKVNAAIEGTELADKSLEEIIHHAEGSGNKGLFNNSAQSW
NHAFYWNSLNPTKTEPAGDLLAAIERDFGSLGELKKKLKDTAVNHFASGWAWLIARDGTLSVTDTHDAGTELVAGIKPLL
VIDVWEHAYYIDRKNLRPAYVDAVVDELLNWDFAAENYAREGSWTYPS

Sequences:

>Translated_208_residues
METAMTIAHPPLPYAQDALAPHISADTLATHHGKHHKAYVDKVNAAIEGTELADKSLEEIIHHAEGSGNKGLFNNSAQSW
NHAFYWNSLNPTKTEPAGDLLAAIERDFGSLGELKKKLKDTAVNHFASGWAWLIARDGTLSVTDTHDAGTELVAGIKPLL
VIDVWEHAYYIDRKNLRPAYVDAVVDELLNWDFAAENYAREGSWTYPS
>Mature_208_residues
METAMTIAHPPLPYAQDALAPHISADTLATHHGKHHKAYVDKVNAAIEGTELADKSLEEIIHHAEGSGNKGLFNNSAQSW
NHAFYWNSLNPTKTEPAGDLLAAIERDFGSLGELKKKLKDTAVNHFASGWAWLIARDGTLSVTDTHDAGTELVAGIKPLL
VIDVWEHAYYIDRKNLRPAYVDAVVDELLNWDFAAENYAREGSWTYPS

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=193, Percent_Identity=38.860103626943, Blast_Score=124, Evalue=4e-29,
Organism=Homo sapiens, GI67782305, Length=193, Percent_Identity=38.860103626943, Blast_Score=124, Evalue=4e-29,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=32.994923857868, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1787946, Length=197, Percent_Identity=50.761421319797, Blast_Score=201, Evalue=2e-53,
Organism=Escherichia coli, GI1790342, Length=205, Percent_Identity=39.5121951219512, Blast_Score=140, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI17506561, Length=206, Percent_Identity=37.378640776699, Blast_Score=120, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=36, Blast_Score=120, Evalue=6e-28,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=30.3317535545024, Blast_Score=86, Evalue=5e-18,
Organism=Drosophila melanogaster, GI17136812, Length=188, Percent_Identity=40.4255319148936, Blast_Score=124, Evalue=5e-29,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22971; Mature: 22971

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METAMTIAHPPLPYAQDALAPHISADTLATHHGKHHKAYVDKVNAAIEGTELADKSLEEI
CCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
IHHAEGSGNKGLFNNSAQSWNHAFYWNSLNPTKTEPAGDLLAAIERDFGSLGELKKKLKD
HHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHH
TAVNHFASGWAWLIARDGTLSVTDTHDAGTELVAGIKPLLVIDVWEHAYYIDRKNLRPAY
HHHHHHHCCEEEEEEECCEEEEECCCCCHHHHHHCCCCEEEEEEHHHHEEECCCCCCHHH
VDAVVDELLNWDFAAENYAREGSWTYPS
HHHHHHHHHCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
METAMTIAHPPLPYAQDALAPHISADTLATHHGKHHKAYVDKVNAAIEGTELADKSLEEI
CCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
IHHAEGSGNKGLFNNSAQSWNHAFYWNSLNPTKTEPAGDLLAAIERDFGSLGELKKKLKD
HHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHH
TAVNHFASGWAWLIARDGTLSVTDTHDAGTELVAGIKPLLVIDVWEHAYYIDRKNLRPAY
HHHHHHHCCEEEEEEECCEEEEECCCCCHHHHHHCCCCEEEEEEHHHHEEECCCCCCHHH
VDAVVDELLNWDFAAENYAREGSWTYPS
HHHHHHHHHCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3542995 [H]