| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485783
Identifier: 103485783
GI number: 103485783
Start: 285198
End: 286742
Strand: Direct
Name: 103485783
Synonym: Sala_0288
Alternate gene names: NA
Gene position: 285198-286742 (Clockwise)
Preceding gene: 103485781
Following gene: 103485784
Centisome position: 8.53
GC content: 66.67
Gene sequence:
>1545_bases ATGGCAGAGCGGCCCCCTGGGGAAATGAACGATGCGGCGCGGGCCACATCGGCGACGCGCGGGGGACGGGATTTGCCGCT GACCAGGGACGGACGGACGGAGCGCGAACGGCGACGCGTTGAAACGCTGCGCGAATATCATCTGCTCGATACCGGTGCCG AAGCGGCATTCGATCGCGTGACCAAGCTGGTCGCCGACCTGTTCGACGCGCCGATCGCGCTCATTTCGCTCGTCGATGAC TGCCGCCAATGGTTCAAGTCGGCGCACGGGCTCGACGTTCCGGAAACGCCGCGCGACATCAGCTTTTGCAAACATGTCGT CGAGGACGAACAGCCGCTCATTGTCGGCGATGCCGCCAGCGACCCGCGTTTTCAGGACAACCCGCTCGTCACGGGCGAGC CGTACATCCGCTTTTATGGCGGCGTGCCGCTCTTCGCCTATAATGGCGCGATCCTCGGGACGCTCTGCATCATCGACCGC AAGCCGCGCCCGGCGCTCAGCTTTCGCGAGGTCGAGCGGCTTCAGGATTTCGCCGCGCTGGTGATGGCGGAGGCCGATCT GCGCCGGATCGTCGGCGAGCGCGACGAGGCGCGGCGAATGCTGGAGCAGGCGCTCGATTTTTCGGGCATCGCGACCTGGC GCTACGACGCGCGCACCGGCGCGATCCACTGGAGCGGTGCGGTGGCCGAGCTGTGGGGCGCCGATTATGCGACCGCGCTG GCGCATATCGACGGCTTTTTCGACCGCCTCCACCCCGACGACCGCGAGGCCGTGCGCGGCGTGCTGGGCGAATCGGTCGC GCATGGCGGGCATTATGCGACCGAATATCGCATCCAGCATCCCGAACGCGGCGTCCGCTGGATCGCGGTTCACGCCGACT GGGACGTCAGGACCGACGACGCGATCCTGACCGGGGTCAGCATGGACATCACCGAACAGAAAAGCCGCCAGGAAAATGCC AATCTGCTGATGCGCGAGCTGCATCACCGGATGCGCAACCTGTTCGCGACGGTCGGCGCGATCATCTCGCTCACCCGCCA CGCCGCGCGCGACGTCGACGATTATGTCGAACGGATCAGCAGCCGCCTCGACGCGCTGAACCGCGCCCAGAATGTCCTGC TCGGCGCCAATTTCATGACCGGGTCGATGCACGCCCTCCTGCGCGAGGTGGAGGCGAGCTTTCCGCGCATTCACTGGTCG GGGCCCGATCTGTTGCTTCCCGAAAATGCGCTGGTGGCGATGGCGCTGCTGTTCAACGAGCTGGCGACCAATGCCGCCAA GCACGGCGCGCTGTCGGGTGAACGCGGGCAGGTCGAGGTCCGCTGGACGCAGGACGACGAAGGCGCCGACGATCGCCGCT TTCGCCTGACCTGGGCCGAAAGCGGCGCCGACCGCGAAATCACGCCGCCCGAACGAACGAGCTTTGGCACCTTGCTCATG GAGCGCAGCGTCAGGAACAACCTTGGCGGAACGATCGCGCGGCGCTGGGAGCCGGGTGGCCTGATCGTCGACATCACGCT CCCCGCACGGTGGCGCGAGGCCTGA
Upstream 100 bases:
>100_bases GCGTAGAGTCAGCCGGGACGCGCCGTTACGGTGGGCAAGCCGGTGAAATGGCGCTGTTTCGCACGCCGGGCGGCAAGATT GTTTTTTTAGGACCAAGTTC
Downstream 100 bases:
>100_bases GCGCGGCGGCCGATGGCAAGGGCGACGACGTGGATCGAGCCGCATCCGGGCGGCATCTATGTGAAGCCCGCCGACCTGTG GATTGACCCGTCGCGCCCTG
Product: signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 514; Mature: 513
Protein sequence:
>514_residues MAERPPGEMNDAARATSATRGGRDLPLTRDGRTERERRRVETLREYHLLDTGAEAAFDRVTKLVADLFDAPIALISLVDD CRQWFKSAHGLDVPETPRDISFCKHVVEDEQPLIVGDAASDPRFQDNPLVTGEPYIRFYGGVPLFAYNGAILGTLCIIDR KPRPALSFREVERLQDFAALVMAEADLRRIVGERDEARRMLEQALDFSGIATWRYDARTGAIHWSGAVAELWGADYATAL AHIDGFFDRLHPDDREAVRGVLGESVAHGGHYATEYRIQHPERGVRWIAVHADWDVRTDDAILTGVSMDITEQKSRQENA NLLMRELHHRMRNLFATVGAIISLTRHAARDVDDYVERISSRLDALNRAQNVLLGANFMTGSMHALLREVEASFPRIHWS GPDLLLPENALVAMALLFNELATNAAKHGALSGERGQVEVRWTQDDEGADDRRFRLTWAESGADREITPPERTSFGTLLM ERSVRNNLGGTIARRWEPGGLIVDITLPARWREA
Sequences:
>Translated_514_residues MAERPPGEMNDAARATSATRGGRDLPLTRDGRTERERRRVETLREYHLLDTGAEAAFDRVTKLVADLFDAPIALISLVDD CRQWFKSAHGLDVPETPRDISFCKHVVEDEQPLIVGDAASDPRFQDNPLVTGEPYIRFYGGVPLFAYNGAILGTLCIIDR KPRPALSFREVERLQDFAALVMAEADLRRIVGERDEARRMLEQALDFSGIATWRYDARTGAIHWSGAVAELWGADYATAL AHIDGFFDRLHPDDREAVRGVLGESVAHGGHYATEYRIQHPERGVRWIAVHADWDVRTDDAILTGVSMDITEQKSRQENA NLLMRELHHRMRNLFATVGAIISLTRHAARDVDDYVERISSRLDALNRAQNVLLGANFMTGSMHALLREVEASFPRIHWS GPDLLLPENALVAMALLFNELATNAAKHGALSGERGQVEVRWTQDDEGADDRRFRLTWAESGADREITPPERTSFGTLLM ERSVRNNLGGTIARRWEPGGLIVDITLPARWREA >Mature_513_residues AERPPGEMNDAARATSATRGGRDLPLTRDGRTERERRRVETLREYHLLDTGAEAAFDRVTKLVADLFDAPIALISLVDDC RQWFKSAHGLDVPETPRDISFCKHVVEDEQPLIVGDAASDPRFQDNPLVTGEPYIRFYGGVPLFAYNGAILGTLCIIDRK PRPALSFREVERLQDFAALVMAEADLRRIVGERDEARRMLEQALDFSGIATWRYDARTGAIHWSGAVAELWGADYATALA HIDGFFDRLHPDDREAVRGVLGESVAHGGHYATEYRIQHPERGVRWIAVHADWDVRTDDAILTGVSMDITEQKSRQENAN LLMRELHHRMRNLFATVGAIISLTRHAARDVDDYVERISSRLDALNRAQNVLLGANFMTGSMHALLREVEASFPRIHWSG PDLLLPENALVAMALLFNELATNAAKHGALSGERGQVEVRWTQDDEGADDRRFRLTWAESGADREITPPERTSFGTLLME RSVRNNLGGTIARRWEPGGLIVDITLPARWREA
Specific function: Photosensitive kinase that is involved in increased bacterial virulence upon exposure to light. Once ejected from an infected animal host, sunlight acts as an environmental signal that increases the virulence of the bacterium, preparing it for infection o
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR013655 - InterPro: IPR011102 [H]
Pfam domain/function: PF07536 HWE_HK; PF00989 PAS; PF08447 PAS_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 57696; Mature: 57564
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: PS50112 PAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAERPPGEMNDAARATSATRGGRDLPLTRDGRTERERRRVETLREYHLLDTGAEAAFDRV CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH TKLVADLFDAPIALISLVDDCRQWFKSAHGLDVPETPRDISFCKHVVEDEQPLIVGDAAS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCC DPRFQDNPLVTGEPYIRFYGGVPLFAYNGAILGTLCIIDRKPRPALSFREVERLQDFAAL CCCCCCCCCCCCCCCEEEECCCEEEEECCHHEEEEEEECCCCCCCCCHHHHHHHHHHHHH VMAEADLRRIVGERDEARRMLEQALDFSGIATWRYDARTGAIHWSGAVAELWGADYATAL HHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHCCHHHHHH AHIDGFFDRLHPDDREAVRGVLGESVAHGGHYATEYRIQHPERGVRWIAVHADWDVRTDD HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCC AILTGVSMDITEQKSRQENANLLMRELHHRMRNLFATVGAIISLTRHAARDVDDYVERIS CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH SRLDALNRAQNVLLGANFMTGSMHALLREVEASFPRIHWSGPDLLLPENALVAMALLFNE HHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHH LATNAAKHGALSGERGQVEVRWTQDDEGADDRRFRLTWAESGADREITPPERTSFGTLLM HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHH ERSVRNNLGGTIARRWEPGGLIVDITLPARWREA HHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCC >Mature Secondary Structure AERPPGEMNDAARATSATRGGRDLPLTRDGRTERERRRVETLREYHLLDTGAEAAFDRV CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH TKLVADLFDAPIALISLVDDCRQWFKSAHGLDVPETPRDISFCKHVVEDEQPLIVGDAAS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCC DPRFQDNPLVTGEPYIRFYGGVPLFAYNGAILGTLCIIDRKPRPALSFREVERLQDFAAL CCCCCCCCCCCCCCCEEEECCCEEEEECCHHEEEEEEECCCCCCCCCHHHHHHHHHHHHH VMAEADLRRIVGERDEARRMLEQALDFSGIATWRYDARTGAIHWSGAVAELWGADYATAL HHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHCCHHHHHH AHIDGFFDRLHPDDREAVRGVLGESVAHGGHYATEYRIQHPERGVRWIAVHADWDVRTDD HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCC AILTGVSMDITEQKSRQENANLLMRELHHRMRNLFATVGAIISLTRHAARDVDDYVERIS CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH SRLDALNRAQNVLLGANFMTGSMHALLREVEASFPRIHWSGPDLLLPENALVAMALLFNE HHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHH LATNAAKHGALSGERGQVEVRWTQDDEGADDRRFRLTWAESGADREITPPERTSFGTLLM HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHH ERSVRNNLGGTIARRWEPGGLIVDITLPARWREA HHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA