Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485718
Identifier: 103485718
GI number: 103485718
Start: 231217
End: 231849
Strand: Direct
Name: 103485718
Synonym: Sala_0222
Alternate gene names: NA
Gene position: 231217-231849 (Clockwise)
Preceding gene: 103485717
Following gene: 103485719
Centisome position: 6.91
GC content: 65.24
Gene sequence:
>633_bases ATGACCGCCGCGCGCGTCGAGTTTTTCTTCGATCTATCCTCGCCCTGGACCTGCCTCGCCTTTCACAACCTGCCTGCCGT GCTCGAACGGACAGGCGCGAGCGCGCTGTATCGGCCGATCCTCGTCGGCGGCGTGTTCAATGCGGTCAATCCCGCCGTCT ATGCGGCGCGCGAGCAGACCGACAACCGGCGGCTCCAGCATAGCTGGAAGGTGCTGAAGGACTGGGCGCGCCTTGCCGAC GTGCCGATGAATTTTCCCTCGCGATGGCATCCGGCAAAGAGCATCGCCGCGATGCGTTTCTGCTGCGCGATCGAAGCGGA TCAGGCGGCGCTCGTCCGCTTTGCGCGCGGCGCCTTCGCGAGCTATTTCGACCGGCAGGAAAATCTCGACGACCCGGTGG TGCTCGCGGCGGTCGCCGATGCCGAGGGGCTCGACGGCGCCGCGCTCGCCGCCGCGGCGGGGAGCGATGCGGTCAAGGCG CGGCTGCGTGCGAACACCGATGAACTCATCGCGCGCGGCGGCTATGGTTCGCCGACGATCTTCGTCGATCGCGATGACAT GTATTTCGGCAACGACCAGCTTCCGCTTGTCGAGGCGGCTCTAAAACATAAAACGCAGAGGACTCTCGCATGA
Upstream 100 bases:
>100_bases GACTTCCTCGAAGCCTTGCCGCGCCATGACACGGGCAAGCTCTACAAACGCCTGCTTCGCGACCGATATTGGGAGAAGGC GAAGGCGGAGGCCTGATGCA
Downstream 100 bases:
>100_bases AGGACCGGATTTCGATCACCATGCTCGACGGCGGGATCGCCGACGTCCGGCTGATCCGCGCCGACAAGATGAATGCGCTC GACAGCGCAATGTGGGAAGC
Product: DSBA oxidoreductase
Products: NA
Alternate protein names: Dsba Oxidoreductase; 2-Hydroxychromene-2-Carboxylate Isomerase; DSBA-Like Thioredoxin Domain Protein
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MTAARVEFFFDLSSPWTCLAFHNLPAVLERTGASALYRPILVGGVFNAVNPAVYAAREQTDNRRLQHSWKVLKDWARLAD VPMNFPSRWHPAKSIAAMRFCCAIEADQAALVRFARGAFASYFDRQENLDDPVVLAAVADAEGLDGAALAAAAGSDAVKA RLRANTDELIARGGYGSPTIFVDRDDMYFGNDQLPLVEAALKHKTQRTLA
Sequences:
>Translated_210_residues MTAARVEFFFDLSSPWTCLAFHNLPAVLERTGASALYRPILVGGVFNAVNPAVYAAREQTDNRRLQHSWKVLKDWARLAD VPMNFPSRWHPAKSIAAMRFCCAIEADQAALVRFARGAFASYFDRQENLDDPVVLAAVADAEGLDGAALAAAAGSDAVKA RLRANTDELIARGGYGSPTIFVDRDDMYFGNDQLPLVEAALKHKTQRTLA >Mature_209_residues TAARVEFFFDLSSPWTCLAFHNLPAVLERTGASALYRPILVGGVFNAVNPAVYAAREQTDNRRLQHSWKVLKDWARLADV PMNFPSRWHPAKSIAAMRFCCAIEADQAALVRFARGAFASYFDRQENLDDPVVLAAVADAEGLDGAALAAAAGSDAVKAR LRANTDELIARGGYGSPTIFVDRDDMYFGNDQLPLVEAALKHKTQRTLA
Specific function: Unknown
COG id: COG3917
COG function: function code Q; 2-hydroxychromene-2-carboxylate isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22987; Mature: 22856
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAARVEFFFDLSSPWTCLAFHNLPAVLERTGASALYRPILVGGVFNAVNPAVYAAREQT CCCCEEEEEEECCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH DNRRLQHSWKVLKDWARLADVPMNFPSRWHPAKSIAAMRFCCAIEADQAALVRFARGAFA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SYFDRQENLDDPVVLAAVADAEGLDGAALAAAAGSDAVKARLRANTDELIARGGYGSPTI HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHCCCHHHHHHHHCCHHHHHCCCCCCCCEE FVDRDDMYFGNDQLPLVEAALKHKTQRTLA EEECCCEEECCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure TAARVEFFFDLSSPWTCLAFHNLPAVLERTGASALYRPILVGGVFNAVNPAVYAAREQT CCCEEEEEEECCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH DNRRLQHSWKVLKDWARLADVPMNFPSRWHPAKSIAAMRFCCAIEADQAALVRFARGAFA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SYFDRQENLDDPVVLAAVADAEGLDGAALAAAAGSDAVKARLRANTDELIARGGYGSPTI HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHCCCHHHHHHHHCCHHHHHCCCCCCCCEE FVDRDDMYFGNDQLPLVEAALKHKTQRTLA EEECCCEEECCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA