| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is ygiN [C]
Identifier: 99081036
GI number: 99081036
Start: 1286318
End: 1286605
Strand: Direct
Name: ygiN [C]
Synonym: TM1040_1195
Alternate gene names: 99081036
Gene position: 1286318-1286605 (Clockwise)
Preceding gene: 99081035
Following gene: 99081037
Centisome position: 40.19
GC content: 61.11
Gene sequence:
>288_bases ATGGCCGTTTTGGTAATCGCAGAGCTGAAGACCGCTTATGAGCGGCGGGACACGCTGTTGGAGTTCGTCCAGACCCTCGC AGCGCACAGCAGGGCAGAGCCCGGCTGCCTGTCCTACCGCCCGATGCTCGATGTCGATCAGGCTGGTACGATCGTGATTG TCGAGAAATGGCAGAGCGCCGCCGCGCTCGAGGCCCATGGTCAAACAGCCCATATGGCGGACTTCAAGGCGGAGCTTGGC GGGGTCGAGGTCTCAATCGAGACCTTTGACATCGCCAACCCGTCATAG
Upstream 100 bases:
>100_bases CTACTCGGAGCTCAACGCGACTCTGCAGCCGCTTTGGGCACGATTGGGCGCCATGCAGACCGGCCAATGTGATGAGAATG GATCATAAGAGGAGGCCGCA
Downstream 100 bases:
>100_bases CGTCAAACATCAGGGTCGAGCCGGACCAATACCGCGGGCCGCAGACAGGCGGCCCGCGGCTCCGTGAAACATTGAATCTG AACGGGACCTTTCGTTCCGT
Product: antibiotic biosynthesis monooxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 95; Mature: 94
Protein sequence:
>95_residues MAVLVIAELKTAYERRDTLLEFVQTLAAHSRAEPGCLSYRPMLDVDQAGTIVIVEKWQSAAALEAHGQTAHMADFKAELG GVEVSIETFDIANPS
Sequences:
>Translated_95_residues MAVLVIAELKTAYERRDTLLEFVQTLAAHSRAEPGCLSYRPMLDVDQAGTIVIVEKWQSAAALEAHGQTAHMADFKAELG GVEVSIETFDIANPS >Mature_94_residues AVLVIAELKTAYERRDTLLEFVQTLAAHSRAEPGCLSYRPMLDVDQAGTIVIVEKWQSAAALEAHGQTAHMADFKAELGG VEVSIETFDIANPS
Specific function: Unknown
COG id: COG1359
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 260 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10316; Mature: 10185
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLVIAELKTAYERRDTLLEFVQTLAAHSRAEPGCLSYRPMLDVDQAGTIVIVEKWQSA CEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC AALEAHGQTAHMADFKAELGGVEVSIETFDIANPS HHHHCCCCCCHHHHHHHHCCCEEEEEEEEECCCCC >Mature Secondary Structure AVLVIAELKTAYERRDTLLEFVQTLAAHSRAEPGCLSYRPMLDVDQAGTIVIVEKWQSA EEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC AALEAHGQTAHMADFKAELGGVEVSIETFDIANPS HHHHCCCCCCHHHHHHHHCCCEEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA