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The map label for this gene is 99080996

Identifier: 99080996

GI number: 99080996

Start: 1246601

End: 1247377

Strand: Direct

Name: 99080996

Synonym: TM1040_1155

Alternate gene names: NA

Gene position: 1246601-1247377 (Clockwise)

Preceding gene: 99080995

Following gene: 99080998

Centisome position: 38.94

GC content: 67.82

Gene sequence:

>777_bases
ATGCAGTTTGACGATGACCTGATTGCCTGCGCCGAGGCGGTTCAGAAGGGCGATCCAGACCGGTTCCTGGCCGCAATGGC
CGCGCCGGTAGAGGCGCGTGCTGTGCTGTTTGCCCTCTATGCGTTCAACCTGGAGATTTCGCGTGCGCCCTGGGCCAGCC
AGGAAAGCATGATTGCAGAGATGCGGGTGCAATGGTGGCGTGATGTGGGCGCAGAGATCGCCGCAGGCGGGCCGGTGCGC
AGACACTATGTGGCGACACCTCTCACGCGGCTTGTTGATCGCAGCGCGGCGCGAGCGATTGACGCGATGGCGGAGGCGCG
ACGCTGGGACATCTACCGCGACCCTTTTGAGGATGAGGCGGCGTTTGATGCCTATATCGACGCAAACGCCGGGGGGCTGA
TGTGGATGGCGGCGGCCTCTCTGGGGGCGGCAGACGAAGCCGTTGTGCGTGACTATGCCTATGCGGCGGGTCTGGCGGCC
TATATGCGGGCGATCCCGGAGCTTGAGGCGCAACACCGCGTGCCGCTCTTGGATGGGACCTCTGCAGGGCTGGTCGCCTT
GGCAGAGCGTGGGCTGGATCGGCTGGCAGCGGCGCGCCGTCGCCGGGGCGCGGTCTCACCCGCTGCGCGCGCGGCGCTCC
TGCCCGGCTGGCAGGCGGAGGCGCTATTGCGGCAGGTGCGGGCAGAGCCCGAACGGGTTGGGGCAGGGGCGCTTGGCGTC
AGTGAGTTCCGCCGGCGTATCAGCCTGATGTGGCAGGCTGGCAGCGGGCGCTGGTAG

Upstream 100 bases:

>100_bases
TCCACGGTTGGGGTCAGTGCCAACATATTGGATGCCTCGTTCGACGCGCTGCTTGATGCGATGAACTGGAAGCTTCTGCG
GGATGCATCTGAGGCAGCGG

Downstream 100 bases:

>100_bases
CTGCGCCCGCGCAATGGGGACTGAGACTGCGGCTGGCGATCAGGTCCCGTCTGGCGATCAGGCCGCGGCGGATTTGGGTT
TCAGCACCAGCCAGATCAGT

Product: hypothetical protein

Products: diphosphate; prephytoene diphosphate

Alternate protein names: None

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MQFDDDLIACAEAVQKGDPDRFLAAMAAPVEARAVLFALYAFNLEISRAPWASQESMIAEMRVQWWRDVGAEIAAGGPVR
RHYVATPLTRLVDRSAARAIDAMAEARRWDIYRDPFEDEAAFDAYIDANAGGLMWMAAASLGAADEAVVRDYAYAAGLAA
YMRAIPELEAQHRVPLLDGTSAGLVALAERGLDRLAAARRRRGAVSPAARAALLPGWQAEALLRQVRAEPERVGAGALGV
SEFRRRISLMWQAGSGRW

Sequences:

>Translated_258_residues
MQFDDDLIACAEAVQKGDPDRFLAAMAAPVEARAVLFALYAFNLEISRAPWASQESMIAEMRVQWWRDVGAEIAAGGPVR
RHYVATPLTRLVDRSAARAIDAMAEARRWDIYRDPFEDEAAFDAYIDANAGGLMWMAAASLGAADEAVVRDYAYAAGLAA
YMRAIPELEAQHRVPLLDGTSAGLVALAERGLDRLAAARRRRGAVSPAARAALLPGWQAEALLRQVRAEPERVGAGALGV
SEFRRRISLMWQAGSGRW
>Mature_258_residues
MQFDDDLIACAEAVQKGDPDRFLAAMAAPVEARAVLFALYAFNLEISRAPWASQESMIAEMRVQWWRDVGAEIAAGGPVR
RHYVATPLTRLVDRSAARAIDAMAEARRWDIYRDPFEDEAAFDAYIDANAGGLMWMAAASLGAADEAVVRDYAYAAGLAA
YMRAIPELEAQHRVPLLDGTSAGLVALAERGLDRLAAARRRRGAVSPAARAALLPGWQAEALLRQVRAEPERVGAGALGV
SEFRRRISLMWQAGSGRW

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.5.1.32

Molecular weight: Translated: 28127; Mature: 28127

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFDDDLIACAEAVQKGDPDRFLAAMAAPVEARAVLFALYAFNLEISRAPWASQESMIAE
CCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHH
MRVQWWRDVGAEIAAGGPVRRHYVATPLTRLVDRSAARAIDAMAEARRWDIYRDPFEDEA
HHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
AFDAYIDANAGGLMWMAAASLGAADEAVVRDYAYAAGLAAYMRAIPELEAQHRVPLLDGT
HHHHEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SAGLVALAERGLDRLAAARRRRGAVSPAARAALLPGWQAEALLRQVRAEPERVGAGALGV
CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCCCCH
SEFRRRISLMWQAGSGRW
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQFDDDLIACAEAVQKGDPDRFLAAMAAPVEARAVLFALYAFNLEISRAPWASQESMIAE
CCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHH
MRVQWWRDVGAEIAAGGPVRRHYVATPLTRLVDRSAARAIDAMAEARRWDIYRDPFEDEA
HHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
AFDAYIDANAGGLMWMAAASLGAADEAVVRDYAYAAGLAAYMRAIPELEAQHRVPLLDGT
HHHHEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SAGLVALAERGLDRLAAARRRRGAVSPAARAALLPGWQAEALLRQVRAEPERVGAGALGV
CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCCCCH
SEFRRRISLMWQAGSGRW
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: geranylgeranyl diphosphate

Specific reaction: 2 geranylgeranyl diphosphate = diphosphate + prephytoene diphosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA