| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080938
Identifier: 99080938
GI number: 99080938
Start: 1176282
End: 1177466
Strand: Direct
Name: 99080938
Synonym: TM1040_1097
Alternate gene names: NA
Gene position: 1176282-1177466 (Clockwise)
Preceding gene: 99080937
Following gene: 99080939
Centisome position: 36.75
GC content: 65.99
Gene sequence:
>1185_bases ATGCAGCAGCAGGGGCAGGGGACGAACTGGGTCATGGTGCTCTTGATCTGGGCCGCGGGCCTCGGCGCGGCGGCGCAATA CGGCAAGATCGCCGTGATCTTTGACCAGCTGCCTGCGCTTTATCCCGGTGTGGGCGCGGCGATGGGCTGGACGGTGTCGC TGGTGGGGGTGCTGGGGATCATTTTTGGCGTTGTGGCGGGGCTTTATGTGTCGGCCATCGGTTTTCGGCGTACGCTTGTT CTGTCGCTGGTGCTTGGCGCGGGGGTCTCGGGCCTGCAGGCGCTGCATCTGCCCTTTGGCCTGTTTCTCATCACGCGCAT GGTCGAGGGGATCTCCCATCTGGGCGTGGTTGTTGCGGCGCCGACGCTGATGGCGATCCTCGCGCGTGGCCCGGCGCGTG GGGTGGCGCTGACGATCTGGAGTACGTTCTTTGGCGTTGCCTTTGCGCTCTTGACGTGGTTCGGGCTGCCGCTCGTCGAG GCACGGGGCATCCCTGCGCTTTTTGCGGTGCATGCGGGGATGATGGGCCTTCTGGCGCTCATCCTGCATTGGGGGCTGCG CGACTTGCCGGTGCCGCCGCGCGCCAGCTATCCTGATCTGCGCGCCTTGCCATCGCTGCATCTGAATATCTACCGATCGC CGCACAAGCTGGCGCCTGCCGCGGGCTGGCTCTTTTATACCTGCTGCTTTGTGGCGGTGCTGACGGTGCTGCCGCCCTAT ATCGCCGAGAGCCAGCGTGCGCATGTGATGGGGGCGATGCCTCTGGTGTCGATCGTGGTCTCTCTGACGCTTGGGGCTGG CCTGCTGCGCGTGACCTCGGGGGTCAAAGTGGTGCAGCTTGGGTTCCTCATCGGCACGGTGGCGATGCTCTGGCTTTGGG CGATGCCGGGGTACTGGCTGGCCTGCATGGTCTTGGCGGCGGGGTTCGGGCTGGTGCAGGGGGCCAGCTTTGCTTCTGTG CCGCAGCTCAATGACACGCCTTCGACGCAATCAGAGGCCAATGGCGCCATGGCGCAGGCGGGCAACATGGGCAATGCCAT CGGCACACCGCTGTTTGTCGCCGTGCTGACCTATGGGGGCTATGGCTCGCTGGTGCTGACCGTGGCGCTGCTGCTTTTGG CCGGGGCCGTGGTGCATCAGGCGCTTGCGCTGCACCGGCAACGGGTGGCGCGGGGGGCGGTCTGA
Upstream 100 bases:
>100_bases GTTTGTGTGGGTACAAAATAGCGCGTTATCGATCTGGCGCCCCGGAGCCGGGAGGCATAAGTTGGCCGCTCATTTTCTTT ACAGGGTCGAGGGCGACGAG
Downstream 100 bases:
>100_bases CAGTTTCTGTCAGGACAGATTTGCGCGTTCCCCCTCTGTTCCTCTTTTTCTCTTGGAGACTCGCGGCGGCTCACCTATGT GTAGTTCAAAGTTTGGGGGC
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Transporter Facilitator Family
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MQQQGQGTNWVMVLLIWAAGLGAAAQYGKIAVIFDQLPALYPGVGAAMGWTVSLVGVLGIIFGVVAGLYVSAIGFRRTLV LSLVLGAGVSGLQALHLPFGLFLITRMVEGISHLGVVVAAPTLMAILARGPARGVALTIWSTFFGVAFALLTWFGLPLVE ARGIPALFAVHAGMMGLLALILHWGLRDLPVPPRASYPDLRALPSLHLNIYRSPHKLAPAAGWLFYTCCFVAVLTVLPPY IAESQRAHVMGAMPLVSIVVSLTLGAGLLRVTSGVKVVQLGFLIGTVAMLWLWAMPGYWLACMVLAAGFGLVQGASFASV PQLNDTPSTQSEANGAMAQAGNMGNAIGTPLFVAVLTYGGYGSLVLTVALLLLAGAVVHQALALHRQRVARGAV
Sequences:
>Translated_394_residues MQQQGQGTNWVMVLLIWAAGLGAAAQYGKIAVIFDQLPALYPGVGAAMGWTVSLVGVLGIIFGVVAGLYVSAIGFRRTLV LSLVLGAGVSGLQALHLPFGLFLITRMVEGISHLGVVVAAPTLMAILARGPARGVALTIWSTFFGVAFALLTWFGLPLVE ARGIPALFAVHAGMMGLLALILHWGLRDLPVPPRASYPDLRALPSLHLNIYRSPHKLAPAAGWLFYTCCFVAVLTVLPPY IAESQRAHVMGAMPLVSIVVSLTLGAGLLRVTSGVKVVQLGFLIGTVAMLWLWAMPGYWLACMVLAAGFGLVQGASFASV PQLNDTPSTQSEANGAMAQAGNMGNAIGTPLFVAVLTYGGYGSLVLTVALLLLAGAVVHQALALHRQRVARGAV >Mature_394_residues MQQQGQGTNWVMVLLIWAAGLGAAAQYGKIAVIFDQLPALYPGVGAAMGWTVSLVGVLGIIFGVVAGLYVSAIGFRRTLV LSLVLGAGVSGLQALHLPFGLFLITRMVEGISHLGVVVAAPTLMAILARGPARGVALTIWSTFFGVAFALLTWFGLPLVE ARGIPALFAVHAGMMGLLALILHWGLRDLPVPPRASYPDLRALPSLHLNIYRSPHKLAPAAGWLFYTCCFVAVLTVLPPY IAESQRAHVMGAMPLVSIVVSLTLGAGLLRVTSGVKVVQLGFLIGTVAMLWLWAMPGYWLACMVLAAGFGLVQGASFASV PQLNDTPSTQSEANGAMAQAGNMGNAIGTPLFVAVLTYGGYGSLVLTVALLLLAGAVVHQALALHRQRVARGAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41161; Mature: 41161
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQQGQGTNWVMVLLIWAAGLGAAAQYGKIAVIFDQLPALYPGVGAAMGWTVSLVGVLGI CCCCCCCCHHHHHHHHHHHCCCHHHHHCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHH IFGVVAGLYVSAIGFRRTLVLSLVLGAGVSGLQALHLPFGLFLITRMVEGISHLGVVVAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PTLMAILARGPARGVALTIWSTFFGVAFALLTWFGLPLVEARGIPALFAVHAGMMGLLAL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHH ILHWGLRDLPVPPRASYPDLRALPSLHLNIYRSPHKLAPAAGWLFYTCCFVAVLTVLPPY HHHCCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHCHH IAESQRAHVMGAMPLVSIVVSLTLGAGLLRVTSGVKVVQLGFLIGTVAMLWLWAMPGYWL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHH ACMVLAAGFGLVQGASFASVPQLNDTPSTQSEANGAMAQAGNMGNAIGTPLFVAVLTYGG HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCC YGSLVLTVALLLLAGAVVHQALALHRQRVARGAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQQQGQGTNWVMVLLIWAAGLGAAAQYGKIAVIFDQLPALYPGVGAAMGWTVSLVGVLGI CCCCCCCCHHHHHHHHHHHCCCHHHHHCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHH IFGVVAGLYVSAIGFRRTLVLSLVLGAGVSGLQALHLPFGLFLITRMVEGISHLGVVVAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PTLMAILARGPARGVALTIWSTFFGVAFALLTWFGLPLVEARGIPALFAVHAGMMGLLAL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHH ILHWGLRDLPVPPRASYPDLRALPSLHLNIYRSPHKLAPAAGWLFYTCCFVAVLTVLPPY HHHCCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHCHH IAESQRAHVMGAMPLVSIVVSLTLGAGLLRVTSGVKVVQLGFLIGTVAMLWLWAMPGYWL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHH ACMVLAAGFGLVQGASFASVPQLNDTPSTQSEANGAMAQAGNMGNAIGTPLFVAVLTYGG HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCC YGSLVLTVALLLLAGAVVHQALALHRQRVARGAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA