| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is spr [C]
Identifier: 99080912
GI number: 99080912
Start: 1145621
End: 1146058
Strand: Direct
Name: spr [C]
Synonym: TM1040_1071
Alternate gene names: 99080912
Gene position: 1145621-1146058 (Clockwise)
Preceding gene: 99080911
Following gene: 99080913
Centisome position: 35.79
GC content: 68.95
Gene sequence:
>438_bases ATGAGCCGCGACATCAACACAGAGGCGGTGGCCCTCGCGCGGCTCTGGCTGGGCACGCCCTATCGCCATCAGGGGGCCAC GCGGGGGGCGGGCTGCGATTGTCTCGGGCTGATCCGGGGCCTCTGGCGCAGCCTTTATGGCAGCGAACCCGAACCCGTGC CGCCCTATACCCGCGACTGGGCCGAACGCGGCAGCGAGGAACGCCTGTGGCGGGCAGCACTGCGGCACATGCAGCCCGCC CAAGACCCCATGCCCGGGCAGGTCATCCTGTTTCGCATGCGCGCAGGGGCGGTGGCCAAACATCTTGGCCTCCAGAGCGA GAGCGCGCGCTTTATCCACGCCTACAGCGGCCATGGCGTTGTCGAAAGCGCGCTGACGCCCGCGTGGCAACGCCGCATCG TGGCGCGCTTTGCCTTTCCCGACCCCAACGATCTCTGA
Upstream 100 bases:
>100_bases ACAATCTGGTGAATTATCAGGGCTTTCCCGACATTCCCGGCGAGGACTGGATGGTGGCAGTCCCCAAGCGCACCGGCCAG AACACCGGTGGCAGCCGCAG
Downstream 100 bases:
>100_bases GGAGGACATTTCATGGCGACACTGGTTCTGGCAGCGGCAGGCTCCGCCGTGGGTGGGGCAATCGGCGGCTCTGTGGCGGG GCTCTCGACGGCGATCATCG
Product: putative phage cell wall peptidase, NlpC/P60
Products: NA
Alternate protein names: NlpC/P60 Family Phage Cell Wall Peptidase; Phage Cell Wall Peptidase NlpC/P; Phage Cell Wall Peptidase Of NlpC/P60 Family; Spr-Family Cell Wall-Associated Hydrolase; Phage Cell Wall Peptidase; Cell Wall-Associated Hydrolase
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MSRDINTEAVALARLWLGTPYRHQGATRGAGCDCLGLIRGLWRSLYGSEPEPVPPYTRDWAERGSEERLWRAALRHMQPA QDPMPGQVILFRMRAGAVAKHLGLQSESARFIHAYSGHGVVESALTPAWQRRIVARFAFPDPNDL
Sequences:
>Translated_145_residues MSRDINTEAVALARLWLGTPYRHQGATRGAGCDCLGLIRGLWRSLYGSEPEPVPPYTRDWAERGSEERLWRAALRHMQPA QDPMPGQVILFRMRAGAVAKHLGLQSESARFIHAYSGHGVVESALTPAWQRRIVARFAFPDPNDL >Mature_144_residues SRDINTEAVALARLWLGTPYRHQGATRGAGCDCLGLIRGLWRSLYGSEPEPVPPYTRDWAERGSEERLWRAALRHMQPAQ DPMPGQVILFRMRAGAVAKHLGLQSESARFIHAYSGHGVVESALTPAWQRRIVARFAFPDPNDL
Specific function: Unknown
COG id: COG0791
COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)
Gene ontology:
Cell location: Attached To The Membrane By A Lipid Anchor [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16247; Mature: 16116
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRDINTEAVALARLWLGTPYRHQGATRGAGCDCLGLIRGLWRSLYGSEPEPVPPYTRDW CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH AERGSEERLWRAALRHMQPAQDPMPGQVILFRMRAGAVAKHLGLQSESARFIHAYSGHGV HHCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEECCCCCH VESALTPAWQRRIVARFAFPDPNDL HHHHHCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SRDINTEAVALARLWLGTPYRHQGATRGAGCDCLGLIRGLWRSLYGSEPEPVPPYTRDW CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH AERGSEERLWRAALRHMQPAQDPMPGQVILFRMRAGAVAKHLGLQSESARFIHAYSGHGV HHCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEECCCCCH VESALTPAWQRRIVARFAFPDPNDL HHHHHCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA