| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080901
Identifier: 99080901
GI number: 99080901
Start: 1139140
End: 1139712
Strand: Direct
Name: 99080901
Synonym: TM1040_1060
Alternate gene names: NA
Gene position: 1139140-1139712 (Clockwise)
Preceding gene: 99080900
Following gene: 99080902
Centisome position: 35.59
GC content: 67.36
Gene sequence:
>573_bases ATGCTGACAGAGCATGCCCCCGAGCTTGAGACCAAATTCGCCCGTTTTGGTGAGGCGCTGACCCTGACTGAGGGCGAGGT GATCGAAGGCTACGCAAGCCTCTTTGGCGTGGCCGATCAAGGCAAGGATATCGTCACGCGTGGCGCTTATGCGGCCTCGC TGGCGGCGCATCAGGCGCGCGGCAGCAAGGTCAAGATGCTCTGGCAGCATGACCCGAGCCACCCCATCGGTGTCTGGGAC GAAATCCTTGAGGACGAGACCGGCCTGCGCGTCAAAGGCCGTATCCTGACAGAAACCCAGAAAGGCGCCGAGGCCGCCGC CCTGGTGCGCGCGGGCGCCATCGAGGGGCTGTCGATCGGCTATCGCACCCTCAAGGCCACCCGCGACAAGGAAGGCCATC GCCGGCTTGAGGACCTCGCCCTCTGGGAGGTGTCTCTGGTGACGTTTCCGATGCTGCCCTCCGCGCGGGTGTCCCGCACG GCCCGCCGCGCGGCAGAGGCCGCGAAATCCGACGCCCCCGAGGCGGGGCTGCGCGCGCTTGCCGAAGCGCTGCGGGCCGC CACCAATCCCTAA
Upstream 100 bases:
>100_bases TACGGCGTTGCTGCCGTGATCCTTGCGCAGGCCTTTCAGGGCTTTCTCTCCGTGCAGATGCCCTGAGTGATTATTTTAGT TTCCAGAGAGGTAGAGCGAT
Downstream 100 bases:
>100_bases CCCCCGAAAGAGGATCAGAGATGACAGACCATCCCTTCACGGGCCACGCGCCCGAGGATGCGGCGACCCCGCCGCAGAAT GTGGCCACGGAAGTGAAACA
Product: peptidase U35, phage prohead HK97
Products: NA
Alternate protein names: HK97 Family Phage Prohead Protease; Peptidase; Prohead Peptidase; Caudovirus Prohead Protease; HK97 Family Phage Capsid Protein; Phage Head Maturation Protease; Phage Prohead Protease And Phage Capsid Protein; HK97 Family Phage Prohead Protease/Phage Capsid Protein; Phage Protease; Phage Pro-Head Protease
Number of amino acids: Translated: 190; Mature: 190
Protein sequence:
>190_residues MLTEHAPELETKFARFGEALTLTEGEVIEGYASLFGVADQGKDIVTRGAYAASLAAHQARGSKVKMLWQHDPSHPIGVWD EILEDETGLRVKGRILTETQKGAEAAALVRAGAIEGLSIGYRTLKATRDKEGHRRLEDLALWEVSLVTFPMLPSARVSRT ARRAAEAAKSDAPEAGLRALAEALRAATNP
Sequences:
>Translated_190_residues MLTEHAPELETKFARFGEALTLTEGEVIEGYASLFGVADQGKDIVTRGAYAASLAAHQARGSKVKMLWQHDPSHPIGVWD EILEDETGLRVKGRILTETQKGAEAAALVRAGAIEGLSIGYRTLKATRDKEGHRRLEDLALWEVSLVTFPMLPSARVSRT ARRAAEAAKSDAPEAGLRALAEALRAATNP >Mature_190_residues MLTEHAPELETKFARFGEALTLTEGEVIEGYASLFGVADQGKDIVTRGAYAASLAAHQARGSKVKMLWQHDPSHPIGVWD EILEDETGLRVKGRILTETQKGAEAAALVRAGAIEGLSIGYRTLKATRDKEGHRRLEDLALWEVSLVTFPMLPSARVSRT ARRAAEAAKSDAPEAGLRALAEALRAATNP
Specific function: Unknown
COG id: COG3740
COG function: function code R; Phage head maturation protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20512; Mature: 20512
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTEHAPELETKFARFGEALTLTEGEVIEGYASLFGVADQGKDIVTRGAYAASLAAHQAR CCCCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC GSKVKMLWQHDPSHPIGVWDEILEDETGLRVKGRILTETQKGAEAAALVRAGAIEGLSIG CCEEEEEEECCCCCCCCHHHHHHCCCCCCEEECEEECCCCCCHHHHHHHHHCCCCCHHHH YRTLKATRDKEGHRRLEDLALWEVSLVTFPMLPSARVSRTARRAAEAAKSDAPEAGLRAL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH AEALRAATNP HHHHHHCCCC >Mature Secondary Structure MLTEHAPELETKFARFGEALTLTEGEVIEGYASLFGVADQGKDIVTRGAYAASLAAHQAR CCCCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC GSKVKMLWQHDPSHPIGVWDEILEDETGLRVKGRILTETQKGAEAAALVRAGAIEGLSIG CCEEEEEEECCCCCCCCHHHHHHCCCCCCEEECEEECCCCCCHHHHHHHHHCCCCCHHHH YRTLKATRDKEGHRRLEDLALWEVSLVTFPMLPSARVSRTARRAAEAAKSDAPEAGLRAL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH AEALRAATNP HHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA