| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yceG [C]
Identifier: 99080896
GI number: 99080896
Start: 1134335
End: 1135489
Strand: Direct
Name: yceG [C]
Synonym: TM1040_1055
Alternate gene names: 99080896
Gene position: 1134335-1135489 (Clockwise)
Preceding gene: 99080895
Following gene: 99080897
Centisome position: 35.44
GC content: 63.38
Gene sequence:
>1155_bases ATGTGGCGCAGTCTGGCCTCGAACATGCTGACGATCCTGATCGTCGGCCTGTTTCTCTTCGCGGGGGTGATCCTGTGGGG CAAGAATGAATACACCGCCGAGGGCCCCCTGTCCGAAGCGATCTGTTTTCAGGTGCCCTCGGGGACCAATATGGCACGGG TGTCGCGCCGTCTTGAAAGCGACGGCGTGGTCTCGAGCGGCACCATCTTTCGCATCGGGGTGAAATATTCCGACAAGGCG CAGGACCTCAAGGCAGGCAGCTACCTTGTGGAGCCCGGCGCTTCGATGGAAGGGATCGTGGATCAGATCACCCGGGGCGG GGCCTCCACCTGTGGCACCGAGATCGTCTATCGCGTTGGCGTGACCCGCGTGCTGGCCGAGGTGCGCGAGCTGGACCCGG CGACCAACGCCTTTGTGGAACGTGCTGAATTTGTCCCCGGCGTGGATGAGACCCCCGCGGTCTATACCGAGAAAAAATCC GAGGCTGACACGCGCTACCGTATTGCACTGGCAGAAGGCGTGACCAGCTGGCAGGTGGTCGAGTCCCTGAAGGCGATGGA CATTCTCGAGGGGGAGCCGGGCCGCCGTCCGCCGGAGGGCAGCCTTGCGCCCGACAGCTACGAGGTCCGCCCCGGAACCT CGCGCGAGGCGGTGCTGGCCGAGATGCAGGCGCGGCAAGACAGGCGGATCGCGGACGCCTGGGAAGCCCGTAGCCCCGAT GCGGCTGTCAAAACCCCAGAGGAAATGCTGATCCTCGCCTCGATCATCGAGAAGGAAACCGGCGTTGCTGAGGAACGCGG TGTGGTGGCCTCTGTCTTCACCAACCGCCTGCGGCGCGGCATGCGCCTTCAGACCGACCCCACGGTGATCTATGGTGTGA CCAAGGGAGAGGGCGTTCTGGGCCGGGGCCTACGGCAGAGCGAGCTGCGCGGCGCAACGCCGTGGAACACGTATGTGATC GAAGGTCTTCCACCAACACCCATCGCCAATCCCGGGCTTGAAAGCCTGGTGGCGGCAGTGAACCCGGATCAGACTGACTA TGTGTTCTTTGTGGCCGATGGCACCGGCGGCCATGCTTTTGCCGAAACGCTCGAAGAGCACAATCGCAACGTCGCGAAAT GGCGAAAGATCGAAGCCGAGCGCAACAACAACTGA
Upstream 100 bases:
>100_bases AATGCCAAGCGCGAACGCAAGATCGACGTGGCGCTGTCCAACTCCTTCGGCTTTGGCGGCACCAATGCTTCGGTGGTCTT CGGGAAAGTGAGCGACTGAT
Downstream 100 bases:
>100_bases CAGTCATGAGGGGGGCGCTGCCCCCCTCGTGCTTTGCTGGGCAAAGCCCTCACCCCCCGGGATATTTCAGGTTAGAAGAA GGGCGGCCATGCGAGGGGCT
Product: aminodeoxychorismate lyase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 384; Mature: 384
Protein sequence:
>384_residues MWRSLASNMLTILIVGLFLFAGVILWGKNEYTAEGPLSEAICFQVPSGTNMARVSRRLESDGVVSSGTIFRIGVKYSDKA QDLKAGSYLVEPGASMEGIVDQITRGGASTCGTEIVYRVGVTRVLAEVRELDPATNAFVERAEFVPGVDETPAVYTEKKS EADTRYRIALAEGVTSWQVVESLKAMDILEGEPGRRPPEGSLAPDSYEVRPGTSREAVLAEMQARQDRRIADAWEARSPD AAVKTPEEMLILASIIEKETGVAEERGVVASVFTNRLRRGMRLQTDPTVIYGVTKGEGVLGRGLRQSELRGATPWNTYVI EGLPPTPIANPGLESLVAAVNPDQTDYVFFVADGTGGHAFAETLEEHNRNVAKWRKIEAERNNN
Sequences:
>Translated_384_residues MWRSLASNMLTILIVGLFLFAGVILWGKNEYTAEGPLSEAICFQVPSGTNMARVSRRLESDGVVSSGTIFRIGVKYSDKA QDLKAGSYLVEPGASMEGIVDQITRGGASTCGTEIVYRVGVTRVLAEVRELDPATNAFVERAEFVPGVDETPAVYTEKKS EADTRYRIALAEGVTSWQVVESLKAMDILEGEPGRRPPEGSLAPDSYEVRPGTSREAVLAEMQARQDRRIADAWEARSPD AAVKTPEEMLILASIIEKETGVAEERGVVASVFTNRLRRGMRLQTDPTVIYGVTKGEGVLGRGLRQSELRGATPWNTYVI EGLPPTPIANPGLESLVAAVNPDQTDYVFFVADGTGGHAFAETLEEHNRNVAKWRKIEAERNNN >Mature_384_residues MWRSLASNMLTILIVGLFLFAGVILWGKNEYTAEGPLSEAICFQVPSGTNMARVSRRLESDGVVSSGTIFRIGVKYSDKA QDLKAGSYLVEPGASMEGIVDQITRGGASTCGTEIVYRVGVTRVLAEVRELDPATNAFVERAEFVPGVDETPAVYTEKKS EADTRYRIALAEGVTSWQVVESLKAMDILEGEPGRRPPEGSLAPDSYEVRPGTSREAVLAEMQARQDRRIADAWEARSPD AAVKTPEEMLILASIIEKETGVAEERGVVASVFTNRLRRGMRLQTDPTVIYGVTKGEGVLGRGLRQSELRGATPWNTYVI EGLPPTPIANPGLESLVAAVNPDQTDYVFFVADGTGGHAFAETLEEHNRNVAKWRKIEAERNNN
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=364, Percent_Identity=32.6923076923077, Blast_Score=171, Evalue=9e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 41863; Mature: 41863
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWRSLASNMLTILIVGLFLFAGVILWGKNEYTAEGPLSEAICFQVPSGTNMARVSRRLES CCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHC DGVVSSGTIFRIGVKYSDKAQDLKAGSYLVEPGASMEGIVDQITRGGASTCGTEIVYRVG CCCCCCCCEEEEEECCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHH VTRVLAEVRELDPATNAFVERAEFVPGVDETPAVYTEKKSEADTRYRIALAEGVTSWQVV HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEHHCCHHHHHH ESLKAMDILEGEPGRRPPEGSLAPDSYEVRPGTSREAVLAEMQARQDRRIADAWEARSPD HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC AAVKTPEEMLILASIIEKETGVAEERGVVASVFTNRLRRGMRLQTDPTVIYGVTKGEGVL CCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCEECCCCEEEEEECCCCCHH GRGLRQSELRGATPWNTYVIEGLPPTPIANPGLESLVAAVNPDQTDYVFFVADGTGGHAF HCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHH AETLEEHNRNVAKWRKIEAERNNN HHHHHHHCCCHHHHHHHHHCCCCC >Mature Secondary Structure MWRSLASNMLTILIVGLFLFAGVILWGKNEYTAEGPLSEAICFQVPSGTNMARVSRRLES CCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHC DGVVSSGTIFRIGVKYSDKAQDLKAGSYLVEPGASMEGIVDQITRGGASTCGTEIVYRVG CCCCCCCCEEEEEECCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHH VTRVLAEVRELDPATNAFVERAEFVPGVDETPAVYTEKKSEADTRYRIALAEGVTSWQVV HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEHHCCHHHHHH ESLKAMDILEGEPGRRPPEGSLAPDSYEVRPGTSREAVLAEMQARQDRRIADAWEARSPD HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC AAVKTPEEMLILASIIEKETGVAEERGVVASVFTNRLRRGMRLQTDPTVIYGVTKGEGVL CCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCEECCCCEEEEEECCCCCHH GRGLRQSELRGATPWNTYVIEGLPPTPIANPGLESLVAAVNPDQTDYVFFVADGTGGHAF HCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHH AETLEEHNRNVAKWRKIEAERNNN HHHHHHHCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]