| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yceI [C]
Identifier: 99080888
GI number: 99080888
Start: 1126045
End: 1126620
Strand: Direct
Name: yceI [C]
Synonym: TM1040_1047
Alternate gene names: 99080888
Gene position: 1126045-1126620 (Clockwise)
Preceding gene: 99080887
Following gene: 99080889
Centisome position: 35.18
GC content: 57.99
Gene sequence:
>576_bases ATGAAAAAGATCCTCCTTGCTGCTGCGCTGATCGGCACCACTGCGACCACTGCTTTTGCAGCCCCCGAGAAGTACACGCT GGATGCGAGCCACAGCCAGATCCTGTTCAACTACAACCACCTTGGTTACTCGACCACTTGGGGCATGTTCTCCGGCTTTG AAGGCGAGATCATGTTCGATCAGGAAGATCCGGCGAACTCCTCCGTGTCCGTGTCCATGCCCGTGAAATCCATGTTCACC GGCTGGGAAGGTCGTTTCAACCACTTCATGTCCGATGACTTCTTTGGCGCGACCGACGACGAGATGGTGTCCTTCACCTC CACCGCGATCGAAGTGACCGGCGAGGACACCGCCAAGATCACCGGCGATCTGACCCTCAACGGTGTGACCAAATCCGTGG TGCTGGATGCCAAGCTCAACAAAGTCGGCGAGCACCCGATGGCAAAGAAACCCTGGGCGGGCTTTGACGCCACCACCACT CTGGTACGCTCTGAGTACGAGCTGGGCCAGTTCGCGCCCTTCGTCAGCGACGAGGTCGAAGTGCAGATCTCTGTCGAGGC GATGAAGGCCGAGTAA
Upstream 100 bases:
>100_bases CATTTCCCAACATCACATGTTGGGTTTTGCGGACTAGCTGAAGCCAACCGCATCGCCGACATTAGACCCATCAAACACAC ACACTCTGGAGCCCAGACAC
Downstream 100 bases:
>100_bases CGGCGACCCCACTCACGGCGCCAATCGACCACTGGTCCCTCGGGGCCGGTGGTTTTTTGTTGCCGTGCTGCGCCTGCTGA TCCCGCATGGGCAGCTCTGC
Product: YceI
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 191; Mature: 191
Protein sequence:
>191_residues MKKILLAAALIGTTATTAFAAPEKYTLDASHSQILFNYNHLGYSTTWGMFSGFEGEIMFDQEDPANSSVSVSMPVKSMFT GWEGRFNHFMSDDFFGATDDEMVSFTSTAIEVTGEDTAKITGDLTLNGVTKSVVLDAKLNKVGEHPMAKKPWAGFDATTT LVRSEYELGQFAPFVSDEVEVQISVEAMKAE
Sequences:
>Translated_191_residues MKKILLAAALIGTTATTAFAAPEKYTLDASHSQILFNYNHLGYSTTWGMFSGFEGEIMFDQEDPANSSVSVSMPVKSMFT GWEGRFNHFMSDDFFGATDDEMVSFTSTAIEVTGEDTAKITGDLTLNGVTKSVVLDAKLNKVGEHPMAKKPWAGFDATTT LVRSEYELGQFAPFVSDEVEVQISVEAMKAE >Mature_191_residues MKKILLAAALIGTTATTAFAAPEKYTLDASHSQILFNYNHLGYSTTWGMFSGFEGEIMFDQEDPANSSVSVSMPVKSMFT GWEGRFNHFMSDDFFGATDDEMVSFTSTAIEVTGEDTAKITGDLTLNGVTKSVVLDAKLNKVGEHPMAKKPWAGFDATTT LVRSEYELGQFAPFVSDEVEVQISVEAMKAE
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787295, Length=193, Percent_Identity=37.3056994818653, Blast_Score=105, Evalue=3e-24,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 20841; Mature: 20841
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILLAAALIGTTATTAFAAPEKYTLDASHSQILFNYNHLGYSTTWGMFSGFEGEIMFD CCHHHEEHHHHCCCCHHEECCCCCEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEEC QEDPANSSVSVSMPVKSMFTGWEGRFNHFMSDDFFGATDDEMVSFTSTAIEVTGEDTAKI CCCCCCCEEEEEECHHHHHCCCCCHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEE TGDLTLNGVTKSVVLDAKLNKVGEHPMAKKPWAGFDATTTLVRSEYELGQFAPFVSDEVE EEEEEECCCEEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEE VQISVEAMKAE EEEEEEEEECC >Mature Secondary Structure MKKILLAAALIGTTATTAFAAPEKYTLDASHSQILFNYNHLGYSTTWGMFSGFEGEIMFD CCHHHEEHHHHCCCCHHEECCCCCEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEEC QEDPANSSVSVSMPVKSMFTGWEGRFNHFMSDDFFGATDDEMVSFTSTAIEVTGEDTAKI CCCCCCCEEEEEECHHHHHCCCCCHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEE TGDLTLNGVTKSVVLDAKLNKVGEHPMAKKPWAGFDATTTLVRSEYELGQFAPFVSDEVE EEEEEECCCEEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEE VQISVEAMKAE EEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA