Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080887

Identifier: 99080887

GI number: 99080887

Start: 1125241

End: 1125774

Strand: Direct

Name: 99080887

Synonym: TM1040_1046

Alternate gene names: NA

Gene position: 1125241-1125774 (Clockwise)

Preceding gene: 99080882

Following gene: 99080888

Centisome position: 35.15

GC content: 64.23

Gene sequence:

>534_bases
ATGGCCATGATCGATCAGAACGTCATCGACTTCACCCGTGTTGCTCCGATTGACCATGTGCCGGGGTTTCGCACCGATGC
GCCGTCGCAAGTCACCCTTCGTCCCGGCGGATCCGTGTCTGCCCTGCTGCTGCGTCTGCTCGGCGGTGGCATGGTGCTGG
CCTCGACCGGACTCTGGCTGATGCCCGAGTCCGGTGCGGATCCGCAGATGGCGCTCATTCGGATCGGGGTCTCGGTGTTC
CTGCTGTTTGCTGGGCTCTGCCTCTTGCTGCAGCGGGACGTGAAACTGCCCCCGGAGTTTCATTTCGACGCCCAACGCAA
CGAGCTGCGGATCGAGGAAATGCGCAGCGATGGTCGCCCGGTGGTGCTGATGCGGCGCAGCTATGCCTCGCTCGGTGCGG
CGCGGTTTGATGGCAAGGTGTTGCAGATCCTCGAAACCGATGGCCGCCTTCTGGCGGAGCTGCCGCTCGAAGGCCGCGCC
ACCCGCAAGCTCCTCTTGGCGCAACTGAGGCCGCATCTGCGCATCGTGAGTTGA

Upstream 100 bases:

>100_bases
CAATGACGGCCACACTGCTGCCCCAATCCGACGCAATCAAATAGGTTAACAACTCGTTAACGGCGCCCGGCGGCGCGGTG
GAGCAGGAAGGATTAAAGCC

Downstream 100 bases:

>100_bases
CCGCGCCAGCACGGCGCCGCTGATCCCGCCCGCGCGGGGCGTGGCCCGGGCCCGTCAAGACCCCACATTTCATGACATTC
CCGTGAGGCCCGCCCGATCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MAMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWLMPESGADPQMALIRIGVSVF
LLFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRPVVLMRRSYASLGAARFDGKVLQILETDGRLLAELPLEGRA
TRKLLLAQLRPHLRIVS

Sequences:

>Translated_177_residues
MAMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWLMPESGADPQMALIRIGVSVF
LLFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRPVVLMRRSYASLGAARFDGKVLQILETDGRLLAELPLEGRA
TRKLLLAQLRPHLRIVS
>Mature_176_residues
AMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWLMPESGADPQMALIRIGVSVFL
LFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRPVVLMRRSYASLGAARFDGKVLQILETDGRLLAELPLEGRAT
RKLLLAQLRPHLRIVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19505; Mature: 19374

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWL
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCEEE
MPESGADPQMALIRIGVSVFLLFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRP
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCC
VVLMRRSYASLGAARFDGKVLQILETDGRLLAELPLEGRATRKLLLAQLRPHLRIVS
EEEEECCHHHHCHHHCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure 
AMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWL
CCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCEEE
MPESGADPQMALIRIGVSVFLLFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRP
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCC
VVLMRRSYASLGAARFDGKVLQILETDGRLLAELPLEGRATRKLLLAQLRPHLRIVS
EEEEECCHHHHCHHHCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA