| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080887
Identifier: 99080887
GI number: 99080887
Start: 1125241
End: 1125774
Strand: Direct
Name: 99080887
Synonym: TM1040_1046
Alternate gene names: NA
Gene position: 1125241-1125774 (Clockwise)
Preceding gene: 99080882
Following gene: 99080888
Centisome position: 35.15
GC content: 64.23
Gene sequence:
>534_bases ATGGCCATGATCGATCAGAACGTCATCGACTTCACCCGTGTTGCTCCGATTGACCATGTGCCGGGGTTTCGCACCGATGC GCCGTCGCAAGTCACCCTTCGTCCCGGCGGATCCGTGTCTGCCCTGCTGCTGCGTCTGCTCGGCGGTGGCATGGTGCTGG CCTCGACCGGACTCTGGCTGATGCCCGAGTCCGGTGCGGATCCGCAGATGGCGCTCATTCGGATCGGGGTCTCGGTGTTC CTGCTGTTTGCTGGGCTCTGCCTCTTGCTGCAGCGGGACGTGAAACTGCCCCCGGAGTTTCATTTCGACGCCCAACGCAA CGAGCTGCGGATCGAGGAAATGCGCAGCGATGGTCGCCCGGTGGTGCTGATGCGGCGCAGCTATGCCTCGCTCGGTGCGG CGCGGTTTGATGGCAAGGTGTTGCAGATCCTCGAAACCGATGGCCGCCTTCTGGCGGAGCTGCCGCTCGAAGGCCGCGCC ACCCGCAAGCTCCTCTTGGCGCAACTGAGGCCGCATCTGCGCATCGTGAGTTGA
Upstream 100 bases:
>100_bases CAATGACGGCCACACTGCTGCCCCAATCCGACGCAATCAAATAGGTTAACAACTCGTTAACGGCGCCCGGCGGCGCGGTG GAGCAGGAAGGATTAAAGCC
Downstream 100 bases:
>100_bases CCGCGCCAGCACGGCGCCGCTGATCCCGCCCGCGCGGGGCGTGGCCCGGGCCCGTCAAGACCCCACATTTCATGACATTC CCGTGAGGCCCGCCCGATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MAMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWLMPESGADPQMALIRIGVSVF LLFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRPVVLMRRSYASLGAARFDGKVLQILETDGRLLAELPLEGRA TRKLLLAQLRPHLRIVS
Sequences:
>Translated_177_residues MAMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWLMPESGADPQMALIRIGVSVF LLFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRPVVLMRRSYASLGAARFDGKVLQILETDGRLLAELPLEGRA TRKLLLAQLRPHLRIVS >Mature_176_residues AMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWLMPESGADPQMALIRIGVSVFL LFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRPVVLMRRSYASLGAARFDGKVLQILETDGRLLAELPLEGRAT RKLLLAQLRPHLRIVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19505; Mature: 19374
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWL CCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCEEE MPESGADPQMALIRIGVSVFLLFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRP ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCC VVLMRRSYASLGAARFDGKVLQILETDGRLLAELPLEGRATRKLLLAQLRPHLRIVS EEEEECCHHHHCHHHCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCEEECC >Mature Secondary Structure AMIDQNVIDFTRVAPIDHVPGFRTDAPSQVTLRPGGSVSALLLRLLGGGMVLASTGLWL CCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCEEE MPESGADPQMALIRIGVSVFLLFAGLCLLLQRDVKLPPEFHFDAQRNELRIEEMRSDGRP ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCC VVLMRRSYASLGAARFDGKVLQILETDGRLLAELPLEGRATRKLLLAQLRPHLRIVS EEEEECCHHHHCHHHCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA