| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080854
Identifier: 99080854
GI number: 99080854
Start: 1083921
End: 1085192
Strand: Reverse
Name: 99080854
Synonym: TM1040_1013
Alternate gene names: NA
Gene position: 1085192-1083921 (Counterclockwise)
Preceding gene: 99080857
Following gene: 99080853
Centisome position: 33.9
GC content: 62.66
Gene sequence:
>1272_bases ATGCCAACCGAACGCATCAGCTTTGCCGGCCATGCCGGACATGACCTCGCCGCGCGCCTCGACCTGCCCGAAGGGCCGGT GTTGGCCACCGCCCTTTTTGCCCATTGTTTTACCTGCTCCAAAGACATCCCCGCCGCCCGGCGTATTGCCGCGCGTCTGG CCGCCATGGGGATCGCGGTGCTGCGATTTGATTTCACCGGGCTGGGTCATTCGGGCGGCGAGTTTGCAAACACCAGCTTC ACCTCCAATGTCGCCGATCTGATTGCGGCTGCGCGCTATCTGGCCAGCCGCAACATGGCGCCAGATATGCTGATCGGACA TTCGCTGGGCGGTGCGGCGGTGCTGCGCGCGCGGGCAGGTATCCCCTCGGTCAAAAGCGTGGTGACGCTGGGTGCGCCCT TTGATCCGGGTCATGTGGCGCATCATTTCGAGGATGCGCTGGAGGAAATCAACCGCACGGGCCGGGCCGAAGTAAACCTT GGCGGGCGGCCCTTTGTGATCGGCAAGGAATTTGTCGATGACATCGGCCAGACGGAACTTGGAGAGGCGATCTCGGACCT CAGGGCCGCACTTCTTGTGATGCATGCGCCGCGGGATGCCACGGTTTCGATCGACAACGCGGCCGAGATCTTTGGTGCGG CGCGCCACCCCAAGAGCTTTGTCACCCTTGATGATGCCGATCACCTGATCACCGATCCCTGTGATGCCGAATATGCAGCA GATATGATTGCCACCTGGGCCACGCGGTATGTAGACATGAAGCCCCCCGCGCCCCCGCCCGGCGCCCCAGAGGGTGTCAT CCGCGTCACCGAGGCGGACCCGCAGGGGTTCTTGCAGGATGTGCAGAACGGCCCCTACCATCATCTGCTGGCTGACGAGC CCGAAGCCTATGGTGGCACCAACCGGGGCCTGTCACCCTATGGGTTTGTGGCCGCCGGCCTTGGGGCCTGCACGTCGATG ACCTTGCGGATGTATGCCCGGCGCAAAGACTGGCTCCTCGAGGGGATCAGCGTCGAGGTCTGCCACGACAAGGTCCATGC GCAGGATGCCATCCCCTCTGGCCCTGCCAAGATCGATCGCTTCATGCGGGTGATCCATCTGCAGGGAGATCTAGATGCGG AGCAGCGCGCCAAGCTTCTGGAGATTGCCGACAAATGCCCGGTGCATCGCACCCTTGAACAGAGCTCACGGGTCGAAACA CGGTTGGAAGATGCACCAAAGCTGCCTGATATGTCCCGCGAAGGGCAGGATCTCGACACCGCCTCCATTTGA
Upstream 100 bases:
>100_bases GAGCCATCGCCGACTTGCCGTTGCTCCCCCATCGGCGCAGTTTAAAGAGGTCGAACCACCCTCGCCAGCCCCGAAAGCCC AACCCCCGAAAGCGACGCCC
Downstream 100 bases:
>100_bases TCGACATCCCATTTGATCGACATCAATGTGCGGCGCGTCCTCTCGGCTAGGCTCTCCGGAGCCAGCAACAAGAGGATGCC CGCCATGGGACTGATGCGCA
Product: OsmC-like protein
Products: NA
Alternate protein names: OsmC-Like Protein; Hydrolase; OsmC-Like Family Protein; Redox Protein; Osmc Family Protein; OsmC-Like Protein Superfamily Protein; Hydrolase Of Alpha/Beta Superfamily Protein; Alpha/Beta Hydrolase Fold Protein; OsmC-Like Protein/ Redox Protein; Redox Protein Regulator Of Disulfide Bond Formation; Alpha/Beta Fold Family Hydrolase; Regulator Of Disulfide Bond Formation Redox Protein; Hydrolytic Protein; Peptidase S; Secreted Protein
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MPTERISFAGHAGHDLAARLDLPEGPVLATALFAHCFTCSKDIPAARRIAARLAAMGIAVLRFDFTGLGHSGGEFANTSF TSNVADLIAAARYLASRNMAPDMLIGHSLGGAAVLRARAGIPSVKSVVTLGAPFDPGHVAHHFEDALEEINRTGRAEVNL GGRPFVIGKEFVDDIGQTELGEAISDLRAALLVMHAPRDATVSIDNAAEIFGAARHPKSFVTLDDADHLITDPCDAEYAA DMIATWATRYVDMKPPAPPPGAPEGVIRVTEADPQGFLQDVQNGPYHHLLADEPEAYGGTNRGLSPYGFVAAGLGACTSM TLRMYARRKDWLLEGISVEVCHDKVHAQDAIPSGPAKIDRFMRVIHLQGDLDAEQRAKLLEIADKCPVHRTLEQSSRVET RLEDAPKLPDMSREGQDLDTASI
Sequences:
>Translated_423_residues MPTERISFAGHAGHDLAARLDLPEGPVLATALFAHCFTCSKDIPAARRIAARLAAMGIAVLRFDFTGLGHSGGEFANTSF TSNVADLIAAARYLASRNMAPDMLIGHSLGGAAVLRARAGIPSVKSVVTLGAPFDPGHVAHHFEDALEEINRTGRAEVNL GGRPFVIGKEFVDDIGQTELGEAISDLRAALLVMHAPRDATVSIDNAAEIFGAARHPKSFVTLDDADHLITDPCDAEYAA DMIATWATRYVDMKPPAPPPGAPEGVIRVTEADPQGFLQDVQNGPYHHLLADEPEAYGGTNRGLSPYGFVAAGLGACTSM TLRMYARRKDWLLEGISVEVCHDKVHAQDAIPSGPAKIDRFMRVIHLQGDLDAEQRAKLLEIADKCPVHRTLEQSSRVET RLEDAPKLPDMSREGQDLDTASI >Mature_422_residues PTERISFAGHAGHDLAARLDLPEGPVLATALFAHCFTCSKDIPAARRIAARLAAMGIAVLRFDFTGLGHSGGEFANTSFT SNVADLIAAARYLASRNMAPDMLIGHSLGGAAVLRARAGIPSVKSVVTLGAPFDPGHVAHHFEDALEEINRTGRAEVNLG GRPFVIGKEFVDDIGQTELGEAISDLRAALLVMHAPRDATVSIDNAAEIFGAARHPKSFVTLDDADHLITDPCDAEYAAD MIATWATRYVDMKPPAPPPGAPEGVIRVTEADPQGFLQDVQNGPYHHLLADEPEAYGGTNRGLSPYGFVAAGLGACTSMT LRMYARRKDWLLEGISVEVCHDKVHAQDAIPSGPAKIDRFMRVIHLQGDLDAEQRAKLLEIADKCPVHRTLEQSSRVETR LEDAPKLPDMSREGQDLDTASI
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45386; Mature: 45255
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTERISFAGHAGHDLAARLDLPEGPVLATALFAHCFTCSKDIPAARRIAARLAAMGIAV CCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LRFDFTGLGHSGGEFANTSFTSNVADLIAAARYLASRNMAPDMLIGHSLGGAAVLRARAG HEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHCC IPSVKSVVTLGAPFDPGHVAHHFEDALEEINRTGRAEVNLGGRPFVIGKEFVDDIGQTEL CCCHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCEEECHHHHHHCCHHHH GEAISDLRAALLVMHAPRDATVSIDNAAEIFGAARHPKSFVTLDDADHLITDPCDAEYAA HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCEEEECCCCCHHCCCCCHHHHH DMIATWATRYVDMKPPAPPPGAPEGVIRVTEADPQGFLQDVQNGPYHHLLADEPEAYGGT HHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEECCCCCCHHCCCC NRGLSPYGFVAAGLGACTSMTLRMYARRKDWLLEGISVEVCHDKVHAQDAIPSGPAKIDR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCHHHHHH FMRVIHLQGDLDAEQRAKLLEIADKCPVHRTLEQSSRVETRLEDAPKLPDMSREGQDLDT HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC ASI CCC >Mature Secondary Structure PTERISFAGHAGHDLAARLDLPEGPVLATALFAHCFTCSKDIPAARRIAARLAAMGIAV CCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LRFDFTGLGHSGGEFANTSFTSNVADLIAAARYLASRNMAPDMLIGHSLGGAAVLRARAG HEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHCC IPSVKSVVTLGAPFDPGHVAHHFEDALEEINRTGRAEVNLGGRPFVIGKEFVDDIGQTEL CCCHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCEEECHHHHHHCCHHHH GEAISDLRAALLVMHAPRDATVSIDNAAEIFGAARHPKSFVTLDDADHLITDPCDAEYAA HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCEEEECCCCCHHCCCCCHHHHH DMIATWATRYVDMKPPAPPPGAPEGVIRVTEADPQGFLQDVQNGPYHHLLADEPEAYGGT HHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEECCCCCCHHCCCC NRGLSPYGFVAAGLGACTSMTLRMYARRKDWLLEGISVEVCHDKVHAQDAIPSGPAKIDR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCHHHHHH FMRVIHLQGDLDAEQRAKLLEIADKCPVHRTLEQSSRVETRLEDAPKLPDMSREGQDLDT HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC ASI CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA