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The map label for this gene is sodB [H]

Identifier: 99080817

GI number: 99080817

Start: 1043026

End: 1043625

Strand: Direct

Name: sodB [H]

Synonym: TM1040_0976

Alternate gene names: 99080817

Gene position: 1043026-1043625 (Clockwise)

Preceding gene: 99080816

Following gene: 99080818

Centisome position: 32.59

GC content: 57.33

Gene sequence:

>600_bases
ATGGCTTTTGAACTTCCCGATCTTCCCTACGCACATGATGCGCTGGCGTCCAAGGGCATGTCTGCCGAGACGCTGGAATA
CCACCACGACCTGCACCACAAGGCTTATGTCGACAACGGCAACAAGCTGATCGCGGGCACCGAGTGGGACGGCAAGTCTC
TCGAAGAGATCATCAAAGGCACCTACAACAAGGACGCCGTGGCCCAGAACGGGATCTTCAACAACATCTCGCAGCTCTGG
AACCACAACCAGTTCTGGGAAATGATGGGCCCGGGCGAAAGCAAAATGCCGACCGAGCTGGAAAAGGCGCTCGTCGAGTC
CTTTGGCTCTGTCGAAAAGTTCAAAGAAGAGTTCTCCGCCGCTGGCGCGGGTCAGTTCGGTTCCGGCTGGGCGTGGCTGG
TCAAGGACACCGATGGTGGCCTCAAAGTGACCAAGACCGAAAACGGCGTGAACCCGCTGTGCTTTGGTCAGGCCGCGCTC
TTGGGTTGTGACGTGTGGGAGCACTCCTACTACATCGACTTCCGCAACAAGCGTCCGGCCTATCTGTCGAACTTCCTCGA
CAACCTGGTGAACTGGGAAAATGTCGCCTCCCGCATGTAA

Upstream 100 bases:

>100_bases
AAGCAATTGAGTCTGGTTTTCCCGCTCTAGCACTTGACCAACGTCGCAGTGGGACGCATGTATCCCACAGGAACGCAACA
TTAATTGACAGGGGGCCACC

Downstream 100 bases:

>100_bases
TTGCGGTCTGAGGTCACTCCAAAGAGGCTCCGTCCGGTTCGGGCGGGGCCTTTTTTTATGCTGGGGACGCGCGGAGTGTG
CCGCCTGCATCTGCGCGTAC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAFELPDLPYAHDALASKGMSAETLEYHHDLHHKAYVDNGNKLIAGTEWDGKSLEEIIKGTYNKDAVAQNGIFNNISQLW
NHNQFWEMMGPGESKMPTELEKALVESFGSVEKFKEEFSAAGAGQFGSGWAWLVKDTDGGLKVTKTENGVNPLCFGQAAL
LGCDVWEHSYYIDFRNKRPAYLSNFLDNLVNWENVASRM

Sequences:

>Translated_199_residues
MAFELPDLPYAHDALASKGMSAETLEYHHDLHHKAYVDNGNKLIAGTEWDGKSLEEIIKGTYNKDAVAQNGIFNNISQLW
NHNQFWEMMGPGESKMPTELEKALVESFGSVEKFKEEFSAAGAGQFGSGWAWLVKDTDGGLKVTKTENGVNPLCFGQAAL
LGCDVWEHSYYIDFRNKRPAYLSNFLDNLVNWENVASRM
>Mature_198_residues
AFELPDLPYAHDALASKGMSAETLEYHHDLHHKAYVDNGNKLIAGTEWDGKSLEEIIKGTYNKDAVAQNGIFNNISQLWN
HNQFWEMMGPGESKMPTELEKALVESFGSVEKFKEEFSAAGAGQFGSGWAWLVKDTDGGLKVTKTENGVNPLCFGQAALL
GCDVWEHSYYIDFRNKRPAYLSNFLDNLVNWENVASRM

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=38.8888888888889, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=38.8888888888889, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=35.0253807106599, Blast_Score=98, Evalue=6e-21,
Organism=Escherichia coli, GI1787946, Length=200, Percent_Identity=50, Blast_Score=197, Evalue=4e-52,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=39.6135265700483, Blast_Score=138, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17506561, Length=196, Percent_Identity=33.1632653061224, Blast_Score=103, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17569479, Length=195, Percent_Identity=31.7948717948718, Blast_Score=94, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=32.5242718446602, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17136812, Length=198, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=7e-23,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22314; Mature: 22183

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPDLPYAHDALASKGMSAETLEYHHDLHHKAYVDNGNKLIAGTEWDGKSLEEIIKG
CCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCEEEEECCCCCHHHHHHHCC
TYNKDAVAQNGIFNNISQLWNHNQFWEMMGPGESKMPTELEKALVESFGSVEKFKEEFSA
CCCCCHHHHCCHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
AGAGQFGSGWAWLVKDTDGGLKVTKTENGVNPLCFGQAALLGCDVWEHSYYIDFRNKRPA
CCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCH
YLSNFLDNLVNWENVASRM
HHHHHHHHHHCHHHHHHCC
>Mature Secondary Structure 
AFELPDLPYAHDALASKGMSAETLEYHHDLHHKAYVDNGNKLIAGTEWDGKSLEEIIKG
CCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCEEEEECCCCCHHHHHHHCC
TYNKDAVAQNGIFNNISQLWNHNQFWEMMGPGESKMPTELEKALVESFGSVEKFKEEFSA
CCCCCHHHHCCHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
AGAGQFGSGWAWLVKDTDGGLKVTKTENGVNPLCFGQAALLGCDVWEHSYYIDFRNKRPA
CCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCH
YLSNFLDNLVNWENVASRM
HHHHHHHHHHCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9765573 [H]