| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080796
Identifier: 99080796
GI number: 99080796
Start: 1020018
End: 1021610
Strand: Direct
Name: 99080796
Synonym: TM1040_0955
Alternate gene names: NA
Gene position: 1020018-1021610 (Clockwise)
Preceding gene: 99080792
Following gene: 99080797
Centisome position: 31.87
GC content: 63.97
Gene sequence:
>1593_bases ATGCGACGACTGGTCATTTGCTGTGATGGTACCTGGAACACCCCGGATCAGCACCGGGGCGGCGTGCGCACGCCTACCAA TGTGGCCAAGCTTCACTCTTTGATTGCCAAAACTGGTAGCGGCGCGGGGGTTGAGATTGCTCAGATCACCTACTACCGGC GCGGGGTCGGCACCTCCGGGGGGCTGTTTCGTCGTCTGTTGGGAGGCGCCATTGGGCTGAAGCTCGAAGATGACATCATG AGCGCCTATAAATTCCTCGCCGAGACCTATGAACCCGGCGATGAGATCTTTCTCTTTGGGTTCAGCCGGGGCGCTTACAC GGTGCGCAGCCTTGCGGGCATGGTCTCTTCGGTTGGACTGGCCGATCTGCGACCGGCGCATCTGTCGCCCTATGTAGAAC CCTGGGATGTGGTGAAGCGGTTGATGCGCAGCTATGCCGCGCGCAAAGCCCAAGGCGATGCGGGCGGCACCACGTCCCCG GACACACGCCCCGCTGCCGTGAGGTTCCACTCCGATCGCGCCGAGGTCGGATTTCGCTTTATCGGGGTCTGGGACACGGT TGGCGCGCTGGGCATCCCGGACGACAAGGGCGTCTTGCGGCTGCTTCTGGGCGATCTGCTGCGGCACGAGTTCAGCAACA CGACGCTTGGGGCCAATGTGGCCTGCGCCCGCCACGCGCTGGCGATGGACGAGCGGCGCAAGGATTTTACTCCGACCCTT TGGACACGCTGGGCTGCGGGGCAGGATGTGGAGCAGCGCTGGTTTCCCGGCGTCCACGCCGATGTCGGCGGCAGCTACGA GGACAGCGGCCTCGGCGACCTGACGCTTGACTGGATGCTGCGCGAAGCACAGGCGCAGGGGTTGGCGCTGCGCGAGATCG CGCCCGGCCATCTGCGCCCGGATGCCTACGGGCGGCGCCATACATCCTATCTGGGGTGGTTCCGCCTGCGTCCAACCCGC CCGCGCGCTGTGCCAGAGGTGTCGGCTGCCGGCGCGGAGGTCTTTGACTGGACCAGTCGCACCTGTTTTGACGCCTCGGT GCTGCAGCGCCAGCGCATGCCACCCCCGGGCGAGACGACCTATTGGCCTACCAATGTGCTGCTGAAAGGGCAGAGCGCGA CGACCATCGCCGCGGCACGCAAGCGTTGGAACACCACGGGGATCTATCTGGAACGTGGCGGCTGTTACCGGGTCGTGGCG CGTGGGAGCTGGCAGGACGCGGCAATCGAGGCCACGGCAAATGGCGTACGTCGCGGGCTTTCCCTTGGCAAGATCGGCTA TGCGCTGGCGGCGCTGCCGGAGGCGTTGCGCCGGATCATTCGCAAACGCAAAGGCTTTGCCACCGCAGACGTGGCGTTTT CGCGTCGTGTCGAAGCTGCGCCCTGGTTTGCGTTGATTGGGTCGATTGCCAATGGGCAGGTTCATGAGGGCAGCGGCGAT GAGATTGCCGATCATGAATATCACCGCCTCGGAGAAGAGGCCGCCATGATCGTGCGGCAGAGTGGCTATCTCTATCTTTT TGCGAATGACGCCTGGCAGATGTACGGCAATAACGCGGGTGTCCTGAAGGTCGAGATCACGCGGCTTTCATGA
Upstream 100 bases:
>100_bases GCGCGCGCGTGTTAGGCTCGGGGATATTTGAGGCGCGCTCCCCCGTGGCGGGACTGAAGGGCGCGAGTTTGCGGAAAATG CGTTTTTTGAGGAATGAGTG
Downstream 100 bases:
>100_bases GGGGGCGGCGCGCGAATGCGCGGAGTTGCGCCCCTTGTGTCTGACCCGAGGGCGTTGTTTAACACATGCAGTACTCAAGG CTTGCGCTACGTGCGGATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 530; Mature: 530
Protein sequence:
>530_residues MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSGGLFRRLLGGAIGLKLEDDIM SAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGLADLRPAHLSPYVEPWDVVKRLMRSYAARKAQGDAGGTTSP DTRPAAVRFHSDRAEVGFRFIGVWDTVGALGIPDDKGVLRLLLGDLLRHEFSNTTLGANVACARHALAMDERRKDFTPTL WTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWMLREAQAQGLALREIAPGHLRPDAYGRRHTSYLGWFRLRPTR PRAVPEVSAAGAEVFDWTSRTCFDASVLQRQRMPPPGETTYWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVA RGSWQDAAIEATANGVRRGLSLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGD EIADHEYHRLGEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS
Sequences:
>Translated_530_residues MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSGGLFRRLLGGAIGLKLEDDIM SAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGLADLRPAHLSPYVEPWDVVKRLMRSYAARKAQGDAGGTTSP DTRPAAVRFHSDRAEVGFRFIGVWDTVGALGIPDDKGVLRLLLGDLLRHEFSNTTLGANVACARHALAMDERRKDFTPTL WTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWMLREAQAQGLALREIAPGHLRPDAYGRRHTSYLGWFRLRPTR PRAVPEVSAAGAEVFDWTSRTCFDASVLQRQRMPPPGETTYWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVA RGSWQDAAIEATANGVRRGLSLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGD EIADHEYHRLGEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS >Mature_530_residues MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSGGLFRRLLGGAIGLKLEDDIM SAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGLADLRPAHLSPYVEPWDVVKRLMRSYAARKAQGDAGGTTSP DTRPAAVRFHSDRAEVGFRFIGVWDTVGALGIPDDKGVLRLLLGDLLRHEFSNTTLGANVACARHALAMDERRKDFTPTL WTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWMLREAQAQGLALREIAPGHLRPDAYGRRHTSYLGWFRLRPTR PRAVPEVSAAGAEVFDWTSRTCFDASVLQRQRMPPPGETTYWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVA RGSWQDAAIEATANGVRRGLSLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGD EIADHEYHRLGEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS
Specific function: Unknown
COG id: COG3673
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6320812, Length=257, Percent_Identity=31.5175097276265, Blast_Score=98, Evalue=3e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58273; Mature: 58273
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSG CCEEEEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCH GLFRRLLGGAIGLKLEDDIMSAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGL HHHHHHHHHHCCCEECHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC ADLRPAHLSPYVEPWDVVKRLMRSYAARKAQGDAGGTTSPDTRPAAVRFHSDRAEVGFRF CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE IGVWDTVGALGIPDDKGVLRLLLGDLLRHEFSNTTLGANVACARHALAMDERRKDFTPTL EEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHH WTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWMLREAQAQGLALREIAPGHLRP HHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCC DAYGRRHTSYLGWFRLRPTRPRAVPEVSAAGAEVFDWTSRTCFDASVLQRQRMPPPGETT CCCCCCCCCEEEEEEECCCCCCCCCCHHCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCC YWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVARGSWQDAAIEATANGVRRGL CCCCCEEEECCCCHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCC SLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGD CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCC EIADHEYHRLGEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS CCCCHHHHHHHHHHHHHEEECCEEEEEECCEEEEECCCCCEEEEEEEECC >Mature Secondary Structure MRRLVICCDGTWNTPDQHRGGVRTPTNVAKLHSLIAKTGSGAGVEIAQITYYRRGVGTSG CCEEEEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCH GLFRRLLGGAIGLKLEDDIMSAYKFLAETYEPGDEIFLFGFSRGAYTVRSLAGMVSSVGL HHHHHHHHHHCCCEECHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC ADLRPAHLSPYVEPWDVVKRLMRSYAARKAQGDAGGTTSPDTRPAAVRFHSDRAEVGFRF CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE IGVWDTVGALGIPDDKGVLRLLLGDLLRHEFSNTTLGANVACARHALAMDERRKDFTPTL EEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHH WTRWAAGQDVEQRWFPGVHADVGGSYEDSGLGDLTLDWMLREAQAQGLALREIAPGHLRP HHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCC DAYGRRHTSYLGWFRLRPTRPRAVPEVSAAGAEVFDWTSRTCFDASVLQRQRMPPPGETT CCCCCCCCCEEEEEEECCCCCCCCCCHHCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCC YWPTNVLLKGQSATTIAAARKRWNTTGIYLERGGCYRVVARGSWQDAAIEATANGVRRGL CCCCCEEEECCCCHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCC SLGKIGYALAALPEALRRIIRKRKGFATADVAFSRRVEAAPWFALIGSIANGQVHEGSGD CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCC EIADHEYHRLGEEAAMIVRQSGYLYLFANDAWQMYGNNAGVLKVEITRLS CCCCHHHHHHHHHHHHHEEECCEEEEEECCEEEEECCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA