| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is hemK [H]
Identifier: 99080783
GI number: 99080783
Start: 1004793
End: 1005629
Strand: Direct
Name: hemK [H]
Synonym: TM1040_0942
Alternate gene names: 99080783
Gene position: 1004793-1005629 (Clockwise)
Preceding gene: 99080782
Following gene: 99080784
Centisome position: 31.39
GC content: 63.8
Gene sequence:
>837_bases ATGAGCACCACCGCCGCACAAGCCATGGTGGCGGCAACGGCGCGCCTAAGAGCGGCGGGGGTAGAGGACCCCGCGCGCGA TGCGCGGGTGCTTTTGGCGCATGCCGCGCGGATTGAGGCGGCGCGGGTCACATTGATCGCGCCCGAGGAACTCTCGCATG AGGTTGCCGAACGCTATGACCAGCTGATTTCCCTGCGCGCGATCCGGGTACCCGTGTCGCATCTCGTGGGCGAGCGGGAT TTCTATGGCCGCCGCTTCAAGGTCTCTGGCGATGTTCTGGACCCGCGTCCCGAAACCGAAACCCTGATCGAAGCGGCGCT TGCAGAGCCGTTCGAGCGGGTGCTGGATCTTGGGGTGGGGTCGGGCTGCATTCTGGTGACGCTCTTGGCAGAGCAGCAGC GCGCGCGCGGCCTTGGCGTGGACCTCAGTGAAGCCGCCTGTCTTCAGGCCAGCGCCAATGCGGTGTTGCACCGCGTCGAG GCGCGTGCCGACATCCGCCAGTCGAACTGGTTTTCCGCTGTTGAAGGGCAGTTTGACCTGATTGTCTCCAACCCGCCTTA TATTGCGCTTGAAGAAATGGATGGGCTCTCGGCAGAGGTGCGCGATCATGAACCGCAAATGGCGCTCACGGATGGGGCGG ATGGCCTCAGCGCGTATCGGCAAATCTGTGCAGGGCTTGCGCCGCATCTCGCAGCAAATGGGCGCGTGATGGTAGAAATC GGCCCCACGCAAGGTCCGGCTGTTGCGCAGATGATGCGCGAAACGGGGCTTCGCGATGTTAGCGTGCTGCCGGACCTGGA TGGTCGGGATCGGGTCGTTTTTGGCCGAAATGCGTGA
Upstream 100 bases:
>100_bases CGCTTTATAAGCTCGATCAGATCATGGGCGGCGACTTGGATGAAATCATTGACGCGCTGATATCCGAGCATCAGGCGAAG CTCCTGGCGGAGATGGGGCA
Downstream 100 bases:
>100_bases CGTGCCGCGTCAATAGCGCTCAATTTTGACAAAAAGAGCCAAAAAACTCCCCGTGCCCCCTTGTTTGTGACAAAGGAACG TGGTTACTCAAGATGTCGCT
Product: HemK family modification methylase
Products: NA
Alternate protein names: M.MloHemKP [H]
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MSTTAAQAMVAATARLRAAGVEDPARDARVLLAHAARIEAARVTLIAPEELSHEVAERYDQLISLRAIRVPVSHLVGERD FYGRRFKVSGDVLDPRPETETLIEAALAEPFERVLDLGVGSGCILVTLLAEQQRARGLGVDLSEAACLQASANAVLHRVE ARADIRQSNWFSAVEGQFDLIVSNPPYIALEEMDGLSAEVRDHEPQMALTDGADGLSAYRQICAGLAPHLAANGRVMVEI GPTQGPAVAQMMRETGLRDVSVLPDLDGRDRVVFGRNA
Sequences:
>Translated_278_residues MSTTAAQAMVAATARLRAAGVEDPARDARVLLAHAARIEAARVTLIAPEELSHEVAERYDQLISLRAIRVPVSHLVGERD FYGRRFKVSGDVLDPRPETETLIEAALAEPFERVLDLGVGSGCILVTLLAEQQRARGLGVDLSEAACLQASANAVLHRVE ARADIRQSNWFSAVEGQFDLIVSNPPYIALEEMDGLSAEVRDHEPQMALTDGADGLSAYRQICAGLAPHLAANGRVMVEI GPTQGPAVAQMMRETGLRDVSVLPDLDGRDRVVFGRNA >Mature_277_residues STTAAQAMVAATARLRAAGVEDPARDARVLLAHAARIEAARVTLIAPEELSHEVAERYDQLISLRAIRVPVSHLVGERDF YGRRFKVSGDVLDPRPETETLIEAALAEPFERVLDLGVGSGCILVTLLAEQQRARGLGVDLSEAACLQASANAVLHRVEA RADIRQSNWFSAVEGQFDLIVSNPPYIALEEMDGLSAEVRDHEPQMALTDGADGLSAYRQICAGLAPHLAANGRVMVEIG PTQGPAVAQMMRETGLRDVSVLPDLDGRDRVVFGRNA
Specific function: Probable protein methyltransferase. May methylate a Gln residue in target proteins [H]
COG id: COG2890
COG function: function code J; Methylase of polypeptide chain release factors
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hemK family [H]
Homologues:
Organism=Homo sapiens, GI7705409, Length=300, Percent_Identity=29.6666666666667, Blast_Score=101, Evalue=8e-22, Organism=Escherichia coli, GI1787463, Length=269, Percent_Identity=35.6877323420074, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI87082085, Length=196, Percent_Identity=34.1836734693878, Blast_Score=92, Evalue=5e-20, Organism=Drosophila melanogaster, GI24582226, Length=279, Percent_Identity=27.9569892473118, Blast_Score=110, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR004556 - InterPro: IPR019874 - InterPro: IPR007848 [H]
Pfam domain/function: PF05175 MTS [H]
EC number: 2.1.1.-
Molecular weight: Translated: 29935; Mature: 29804
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTAAQAMVAATARLRAAGVEDPARDARVLLAHAARIEAARVTLIAPEELSHEVAERYD CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHH QLISLRAIRVPVSHLVGERDFYGRRFKVSGDVLDPRPETETLIEAALAEPFERVLDLGVG HHHHHHHHHCCHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC SGCILVTLLAEQQRARGLGVDLSEAACLQASANAVLHRVEARADIRQSNWFSAVEGQFDL CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEE IVSNPPYIALEEMDGLSAEVRDHEPQMALTDGADGLSAYRQICAGLAPHLAANGRVMVEI EECCCCEEEEECCCCCCCHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE GPTQGPAVAQMMRETGLRDVSVLPDLDGRDRVVFGRNA CCCCCHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCC >Mature Secondary Structure STTAAQAMVAATARLRAAGVEDPARDARVLLAHAARIEAARVTLIAPEELSHEVAERYD CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHH QLISLRAIRVPVSHLVGERDFYGRRFKVSGDVLDPRPETETLIEAALAEPFERVLDLGVG HHHHHHHHHCCHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC SGCILVTLLAEQQRARGLGVDLSEAACLQASANAVLHRVEARADIRQSNWFSAVEGQFDL CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEE IVSNPPYIALEEMDGLSAEVRDHEPQMALTDGADGLSAYRQICAGLAPHLAANGRVMVEI EECCCCEEEEECCCCCCCHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE GPTQGPAVAQMMRETGLRDVSVLPDLDGRDRVVFGRNA CCCCCHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]