| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080771
Identifier: 99080771
GI number: 99080771
Start: 993036
End: 994274
Strand: Reverse
Name: 99080771
Synonym: TM1040_0930
Alternate gene names: NA
Gene position: 994274-993036 (Counterclockwise)
Preceding gene: 99080774
Following gene: 99080768
Centisome position: 31.06
GC content: 61.74
Gene sequence:
>1239_bases ATGGCTGCCCCCCTGCGATTCCACGAATTTCTGTTGCGCAACGCCCCCTATCTTTCGGCAGGGGTCTTGCTGACGTTCCT GTCGAGCTTTGGTCAGACCTTTTTCATTTCGGTATTTGCCGGGCCTATTCAGGCAGAGTTTGGTCTGAGCCACGCCGGAT GGGGTGCCATCTACATGGTGGGGACCACGGCCTCTGCACTTGTGATGGTGGCGGCAGGTGGTCTGTCGGATGTGCTGCGG GTGCGCCAGCTCGGGGCCTTTGTGCTCTGTGGACTGGCGGCGGCCTGCGTACTGATGGCGCTCAATCGCAACTATTGGGT CCTGCCGCTCTCTGTCTTTGCGTTGCGCTTTTTCGGACAGGGTATGAGCACTCATCTCGCGGTGGTTGCCATGGCGCGCT GGTTTGTGGCCACGCGCGGACGGGCGCTGTCGATTGCGGCTCTGGGCGTATCCTTTGGTCAGGCGCTCCTGCCGCTGATC TTTGTGGCGTTGATGGTGCGCTTTGACTGGCGCATGCTCTGGCTTCTGAGCGCGGCGATCTGTCTGCTTGGTGCGCCGTT GCTCTTGCATCTGTTGTCACAAGAGCGCACACCGCGTGCCACCTCTCAGGACGTGAGCAGCACCGGCATGGACAACCGCC ACTGGTCCCGCGGCGAGGTGCTGCGCACGCCGCTCTTTTGGCTGATGGTGCCATCGATTCTGGGTCCGGCGGCCTTTTCG ACCGCCTTCTTCTTTCATCAACTGCATTTCGCCACCACCAAAGGCTGGAGCCTGTTGGAGCTGGTGGCCTATTTCCCGTT TTTCACAGTGATGTCCGTTCTTGCCATGCTGGTTGCGGGCTGGGCACTGGATCGCTGGGGCGCGGCGCGGCTGATGCCGC TCTATCAGCTGCCAATGGTTGCGGCTTTTGCGATCTTTGCCACCACCGCCAGCGGTATCGGCATGGCAGCGGGTTTCCTT GCAATGGCGCTCTCGGTAGGCGCGCATGCGGTACTACCAAGTTCGTTCTGGGCCGAGGCCTATGGCACGCGCTATATCGG TGCGATCAAATCGCTGGTCATGGCGGTGATGGTCTTTGGCACCGCGATCGGCCCGGGCCTGACCGGAGCGCTTATCGACC TCGGGCTTGATTTCGACGCCCAAGGCTACGGCATCGCGGTCTACTTCCTGCTAACAACACTCTGCATCTGGGTCGGCGTG CGCGGCGCGCGACAGCGCTTGACCCCACGCGCAGCCTGA
Upstream 100 bases:
>100_bases CTGGCTCATGGCGCGACAAAAAAGACGCGCCGTCCACGCGATACCGCAAGATGATAGCGCTCACCCTTGCGTCAGATCCT TAACAGGTAAAGCTGTCGCT
Downstream 100 bases:
>100_bases TCTCAGGCGGGCTGTGCCGCCAGTCGCGCGGCCTGACGCGCCAGACGGCGCTCGCGCACAAAGGTATAGAGCCCGGTTGC GATAATCAGCCCGGAGCCGA
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Transporter Facilitator Family; Facilitator Superfamily Transporter; Facilitator Superfamily Permease; Facilitator Superfamily Permease Protein; Facilitator Family Transporter
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MAAPLRFHEFLLRNAPYLSAGVLLTFLSSFGQTFFISVFAGPIQAEFGLSHAGWGAIYMVGTTASALVMVAAGGLSDVLR VRQLGAFVLCGLAAACVLMALNRNYWVLPLSVFALRFFGQGMSTHLAVVAMARWFVATRGRALSIAALGVSFGQALLPLI FVALMVRFDWRMLWLLSAAICLLGAPLLLHLLSQERTPRATSQDVSSTGMDNRHWSRGEVLRTPLFWLMVPSILGPAAFS TAFFFHQLHFATTKGWSLLELVAYFPFFTVMSVLAMLVAGWALDRWGAARLMPLYQLPMVAAFAIFATTASGIGMAAGFL AMALSVGAHAVLPSSFWAEAYGTRYIGAIKSLVMAVMVFGTAIGPGLTGALIDLGLDFDAQGYGIAVYFLLTTLCIWVGV RGARQRLTPRAA
Sequences:
>Translated_412_residues MAAPLRFHEFLLRNAPYLSAGVLLTFLSSFGQTFFISVFAGPIQAEFGLSHAGWGAIYMVGTTASALVMVAAGGLSDVLR VRQLGAFVLCGLAAACVLMALNRNYWVLPLSVFALRFFGQGMSTHLAVVAMARWFVATRGRALSIAALGVSFGQALLPLI FVALMVRFDWRMLWLLSAAICLLGAPLLLHLLSQERTPRATSQDVSSTGMDNRHWSRGEVLRTPLFWLMVPSILGPAAFS TAFFFHQLHFATTKGWSLLELVAYFPFFTVMSVLAMLVAGWALDRWGAARLMPLYQLPMVAAFAIFATTASGIGMAAGFL AMALSVGAHAVLPSSFWAEAYGTRYIGAIKSLVMAVMVFGTAIGPGLTGALIDLGLDFDAQGYGIAVYFLLTTLCIWVGV RGARQRLTPRAA >Mature_411_residues AAPLRFHEFLLRNAPYLSAGVLLTFLSSFGQTFFISVFAGPIQAEFGLSHAGWGAIYMVGTTASALVMVAAGGLSDVLRV RQLGAFVLCGLAAACVLMALNRNYWVLPLSVFALRFFGQGMSTHLAVVAMARWFVATRGRALSIAALGVSFGQALLPLIF VALMVRFDWRMLWLLSAAICLLGAPLLLHLLSQERTPRATSQDVSSTGMDNRHWSRGEVLRTPLFWLMVPSILGPAAFST AFFFHQLHFATTKGWSLLELVAYFPFFTVMSVLAMLVAGWALDRWGAARLMPLYQLPMVAAFAIFATTASGIGMAAGFLA MALSVGAHAVLPSSFWAEAYGTRYIGAIKSLVMAVMVFGTAIGPGLTGALIDLGLDFDAQGYGIAVYFLLTTLCIWVGVR GARQRLTPRAA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44385; Mature: 44254
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAPLRFHEFLLRNAPYLSAGVLLTFLSSFGQTFFISVFAGPIQAEFGLSHAGWGAIYMV CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCHHEEHHHHCCCHHHHCCCCCCCCCEEEEE GTTASALVMVAAGGLSDVLRVRQLGAFVLCGLAAACVLMALNRNYWVLPLSVFALRFFGQ CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCC GMSTHLAVVAMARWFVATRGRALSIAALGVSFGQALLPLIFVALMVRFDWRMLWLLSAAI CHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CLLGAPLLLHLLSQERTPRATSQDVSSTGMDNRHWSRGEVLRTPLFWLMVPSILGPAAFS HHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHH TAFFFHQLHFATTKGWSLLELVAYFPFFTVMSVLAMLVAGWALDRWGAARLMPLYQLPMV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AAFAIFATTASGIGMAAGFLAMALSVGAHAVLPSSFWAEAYGTRYIGAIKSLVMAVMVFG HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHH TAIGPGLTGALIDLGLDFDAQGYGIAVYFLLTTLCIWVGVRGARQRLTPRAA HHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCC >Mature Secondary Structure AAPLRFHEFLLRNAPYLSAGVLLTFLSSFGQTFFISVFAGPIQAEFGLSHAGWGAIYMV CCCHHHHHHHHHCCCCHHHHHHHHHHHHHCHHEEHHHHCCCHHHHCCCCCCCCCEEEEE GTTASALVMVAAGGLSDVLRVRQLGAFVLCGLAAACVLMALNRNYWVLPLSVFALRFFGQ CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCC GMSTHLAVVAMARWFVATRGRALSIAALGVSFGQALLPLIFVALMVRFDWRMLWLLSAAI CHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CLLGAPLLLHLLSQERTPRATSQDVSSTGMDNRHWSRGEVLRTPLFWLMVPSILGPAAFS HHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHH TAFFFHQLHFATTKGWSLLELVAYFPFFTVMSVLAMLVAGWALDRWGAARLMPLYQLPMV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AAFAIFATTASGIGMAAGFLAMALSVGAHAVLPSSFWAEAYGTRYIGAIKSLVMAVMVFG HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHH TAIGPGLTGALIDLGLDFDAQGYGIAVYFLLTTLCIWVGVRGARQRLTPRAA HHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA