| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is fur [H]
Identifier: 99080769
GI number: 99080769
Start: 991564
End: 991980
Strand: Direct
Name: fur [H]
Synonym: TM1040_0928
Alternate gene names: 99080769
Gene position: 991564-991980 (Clockwise)
Preceding gene: 99080767
Following gene: 99080770
Centisome position: 30.98
GC content: 58.75
Gene sequence:
>417_bases ATGACCGACACGATAATCTCGCGCTGTGAGGCCCATGGCCTGCGTATGACCGGCCCGCGCCGCACCATTGCGCGTGTTCT GGAGGAAAGCGACGATCACCCCGATGTCGAAGAGCTGCATGCGCGCGCCAATGCGCAGGATTCGGGGATCTCGCTGGCGA CGGTCTACCGCACCGTCAAACTCTTTGAGGAATCAGGCATTCTGGAACGGCTCGAGTTTGGCGATGGCCGGGCGCGCTAT GAGGATGCCGACCGCGATCATCACGACCATCTCATTGATCTGAACACGGGCGAGGTGATCGAGTTCTGTGATCCGGATAT TGAGGAGCTGCAGGAACGCATTGCCAAAAAGCTCGGCTATGAGCTGCGCGGTCATAAGCTCGAACTCTATGGCGTGCCGA TCAAAAAGGGCAGCTGA
Upstream 100 bases:
>100_bases TGGTGTGCGGGCAAGATGGCTGTTTGCTATGCGTCTTGCATTCGCTAAAAAGAAACGCCAAGCAAGGGACCCCGCATCGA ACGACAGGGACAGATCAGGC
Downstream 100 bases:
>100_bases GCGGGCGCGGTTCGGGTCGCAGCCTGAGGGTCTCATCACCATCGTGAATAGAAAACCTCACAACTTCTGCTGAGGCAGGT GCGATTTCACGCTTGCGTCA
Product: FUR family manganese uptake regulator
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 138; Mature: 137
Protein sequence:
>138_residues MTDTIISRCEAHGLRMTGPRRTIARVLEESDDHPDVEELHARANAQDSGISLATVYRTVKLFEESGILERLEFGDGRARY EDADRDHHDHLIDLNTGEVIEFCDPDIEELQERIAKKLGYELRGHKLELYGVPIKKGS
Sequences:
>Translated_138_residues MTDTIISRCEAHGLRMTGPRRTIARVLEESDDHPDVEELHARANAQDSGISLATVYRTVKLFEESGILERLEFGDGRARY EDADRDHHDHLIDLNTGEVIEFCDPDIEELQERIAKKLGYELRGHKLELYGVPIKKGS >Mature_137_residues TDTIISRCEAHGLRMTGPRRTIARVLEESDDHPDVEELHARANAQDSGISLATVYRTVKLFEESGILERLEFGDGRARYE DADRDHHDHLIDLNTGEVIEFCDPDIEELQERIAKKLGYELRGHKLELYGVPIKKGS
Specific function: Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
Organism=Escherichia coli, GI1786899, Length=132, Percent_Identity=43.9393939393939, Blast_Score=95, Evalue=1e-21,
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 - InterPro: IPR011991 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 15713; Mature: 15582
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTIISRCEAHGLRMTGPRRTIARVLEESDDHPDVEELHARANAQDSGISLATVYRTVK CCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHH LFEESGILERLEFGDGRARYEDADRDHHDHLIDLNTGEVIEFCDPDIEELQERIAKKLGY HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCHHHHHHHHHHHHCC ELRGHKLELYGVPIKKGS HHCCCEEEEEECCCCCCC >Mature Secondary Structure TDTIISRCEAHGLRMTGPRRTIARVLEESDDHPDVEELHARANAQDSGISLATVYRTVK CHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHH LFEESGILERLEFGDGRARYEDADRDHHDHLIDLNTGEVIEFCDPDIEELQERIAKKLGY HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCHHHHHHHHHHHHCC ELRGHKLELYGVPIKKGS HHCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9835040 [H]