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The map label for this gene is ydiU [C]

Identifier: 99080767

GI number: 99080767

Start: 988123

End: 989541

Strand: Direct

Name: ydiU [C]

Synonym: TM1040_0926

Alternate gene names: 99080767

Gene position: 988123-989541 (Clockwise)

Preceding gene: 99080765

Following gene: 99080769

Centisome position: 30.87

GC content: 64.06

Gene sequence:

>1419_bases
ATGACCCTCGATATCCCGTTTGACAATACATACGCGCAACTCGCGCCCGAGTTCTACACGCGACAGGCGCCCACGCCGGT
AAAGGCGCCGCGCCTTCTGGCCTTCAACGACGCGCTTGCGACTCTTCTGGGGATCGCGCGAGGCACGGACGCAGAGCTGG
CCCAGGTTTTTGGCGGCAACGAGCTACCAGAGGGGGCTGACCCGTTGGCGCAGCTTTATGCCGGGCATCAGTTCGGCACC
TACAATCCCCAGCTCGGCGACGGGCGCGCGGTGCTCTTGGGCGAGGTGGTTGGGACCGACGGTCTGCGCCGTGACATTCA
GCTCAAGGGCTCTGGCCCCACGCCCTATTCCCGCCGAGGGGATGGGCGCGCTTGGTTGGGTCCTGTGCTGCGCGAATATG
TGGTTTCAGAAGCGATGCATGCGCTGGGCATTCCGACCACCCGCGCCCTTGCAGCGGTTGAGACAGGCGAGACGGTCTGG
CGCGAGGGTGGATTGCCGGGGGCTGTGCTGACGCGGGTGGCCTCCAGTCATCTGCGTGTTGGCACGTTTCAGATCTTTGC
GGCGCGGGGCAACACGGAGGCGCTGCGCAGCCTTACGGAGTATGCCATCGCGCGCCACTACCCAGAGGCCAAGGGGGCGC
TTGGTCTGTTGCGGGCCGTGCGGGACGCCCAGGTGGAGCTCGTCTCGGCGTGGATGAGTGTTGGCTTCATCCACGGGGTG
ATGAACACGGACAACTCCTCAATTGCGGGAGAGACGATCGATTACGGACCCTGCGCTTTTATGGACGTGTATCACCCCAA
TCGGGTGTTTTCCTCGATCGACCGGACAGGGCGCTATGCCTATGGAAACCAACCACAAATCGCGGTGTGGAACCTCGCAC
AGCTTGCGACGGCGCTGATCCAGCTTGAGGACGATCCCGAAAGCGTACTGGAAGAGGCCACCGAGATCGTGCATGCGATG
CCGGAGCTGCTGGAGGACGCGTGGCTGCGGCGGTTCCGCGCCAAGATCGGCCTTCGGGAGGTCGCAGAGGGCGATCTGGA
ACTGGTGTCGGATCTCTTGGGGATAATGGCGCAGGGGCAGGCGGATTTCACCAATACCTTCCGGGGGCTGCTGGACGGCA
CCGCGCGGGATCAGTTTCTGGAGCCCGAGGCGTTTGATGTCTGGGAGAGCCGCTGGAAGGACCGCCTGTCGCGGGAAGCG
GACCCGGAGGCGCTCATGGCGCGCAGCAACCCGGTTCTGATCCCGCGCAATCACCGGATTGAGCAGATGATCGCTGCAGC
CGTCGGGGGAGATTATGCTTCGTTTGAACGTCTGATGGATGCGCTGTCGCACCCGTTTGAGGCGCGGGAGGACTATGCCG
ATCTGCGCCGCCCGCCAGCGGAGGATGAGGTGGTACAGGCGACGTTCTGCGGCACCTAG

Upstream 100 bases:

>100_bases
GATGATCTCTTGTGCGTTCATGTCCTGCATCATGCGGCTGTGCTCCGGTCTGGTTCTGATTGCGGCTGGTAATTCGCGTG
GGTCACCATATGTTTGCCCC

Downstream 100 bases:

>100_bases
CCCGCTCAGGTTTTGGCGGTTCAGGGACCAATTCTGTAACAGGAGCGTTTGCGCCGCGTTGCGCGTCGCCCGGGGCGCAG
GCCGTTCTTGATGTTGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MTLDIPFDNTYAQLAPEFYTRQAPTPVKAPRLLAFNDALATLLGIARGTDAELAQVFGGNELPEGADPLAQLYAGHQFGT
YNPQLGDGRAVLLGEVVGTDGLRRDIQLKGSGPTPYSRRGDGRAWLGPVLREYVVSEAMHALGIPTTRALAAVETGETVW
REGGLPGAVLTRVASSHLRVGTFQIFAARGNTEALRSLTEYAIARHYPEAKGALGLLRAVRDAQVELVSAWMSVGFIHGV
MNTDNSSIAGETIDYGPCAFMDVYHPNRVFSSIDRTGRYAYGNQPQIAVWNLAQLATALIQLEDDPESVLEEATEIVHAM
PELLEDAWLRRFRAKIGLREVAEGDLELVSDLLGIMAQGQADFTNTFRGLLDGTARDQFLEPEAFDVWESRWKDRLSREA
DPEALMARSNPVLIPRNHRIEQMIAAAVGGDYASFERLMDALSHPFEAREDYADLRRPPAEDEVVQATFCGT

Sequences:

>Translated_472_residues
MTLDIPFDNTYAQLAPEFYTRQAPTPVKAPRLLAFNDALATLLGIARGTDAELAQVFGGNELPEGADPLAQLYAGHQFGT
YNPQLGDGRAVLLGEVVGTDGLRRDIQLKGSGPTPYSRRGDGRAWLGPVLREYVVSEAMHALGIPTTRALAAVETGETVW
REGGLPGAVLTRVASSHLRVGTFQIFAARGNTEALRSLTEYAIARHYPEAKGALGLLRAVRDAQVELVSAWMSVGFIHGV
MNTDNSSIAGETIDYGPCAFMDVYHPNRVFSSIDRTGRYAYGNQPQIAVWNLAQLATALIQLEDDPESVLEEATEIVHAM
PELLEDAWLRRFRAKIGLREVAEGDLELVSDLLGIMAQGQADFTNTFRGLLDGTARDQFLEPEAFDVWESRWKDRLSREA
DPEALMARSNPVLIPRNHRIEQMIAAAVGGDYASFERLMDALSHPFEAREDYADLRRPPAEDEVVQATFCGT
>Mature_471_residues
TLDIPFDNTYAQLAPEFYTRQAPTPVKAPRLLAFNDALATLLGIARGTDAELAQVFGGNELPEGADPLAQLYAGHQFGTY
NPQLGDGRAVLLGEVVGTDGLRRDIQLKGSGPTPYSRRGDGRAWLGPVLREYVVSEAMHALGIPTTRALAAVETGETVWR
EGGLPGAVLTRVASSHLRVGTFQIFAARGNTEALRSLTEYAIARHYPEAKGALGLLRAVRDAQVELVSAWMSVGFIHGVM
NTDNSSIAGETIDYGPCAFMDVYHPNRVFSSIDRTGRYAYGNQPQIAVWNLAQLATALIQLEDDPESVLEEATEIVHAMP
ELLEDAWLRRFRAKIGLREVAEGDLELVSDLLGIMAQGQADFTNTFRGLLDGTARDQFLEPEAFDVWESRWKDRLSREAD
PEALMARSNPVLIPRNHRIEQMIAAAVGGDYASFERLMDALSHPFEAREDYADLRRPPAEDEVVQATFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=382, Percent_Identity=41.8848167539267, Blast_Score=261, Evalue=9e-70,
Organism=Escherichia coli, GI1787999, Length=474, Percent_Identity=41.1392405063291, Blast_Score=328, Evalue=3e-91,
Organism=Saccharomyces cerevisiae, GI6325034, Length=303, Percent_Identity=33.003300330033, Blast_Score=170, Evalue=5e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y926_SILST (Q1GI57)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_612921.1
- STRING:   Q1GI57
- GeneID:   4077554
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_0926
- NMPDR:   fig|292414.1.peg.3006
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- PhylomeDB:   Q1GI57
- ProtClustDB:   CLSK767342
- BioCyc:   SSP292414:TM1040_0926-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 51770; Mature: 51639

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDIPFDNTYAQLAPEFYTRQAPTPVKAPRLLAFNDALATLLGIARGTDAELAQVFGGN
CEEECCCCCHHHHHCHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHCCC
ELPEGADPLAQLYAGHQFGTYNPQLGDGRAVLLGEVVGTDGLRRDIQLKGSGPTPYSRRG
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCEEEECCCCCCCCCCC
DGRAWLGPVLREYVVSEAMHALGIPTTRALAAVETGETVWREGGLPGAVLTRVASSHLRV
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHCEE
GTFQIFAARGNTEALRSLTEYAIARHYPEAKGALGLLRAVRDAQVELVSAWMSVGFIHGV
EEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNTDNSSIAGETIDYGPCAFMDVYHPNRVFSSIDRTGRYAYGNQPQIAVWNLAQLATALI
HCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHH
QLEDDPESVLEEATEIVHAMPELLEDAWLRRFRAKIGLREVAEGDLELVSDLLGIMAQGQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHCCC
ADFTNTFRGLLDGTARDQFLEPEAFDVWESRWKDRLSREADPEALMARSNPVLIPRNHRI
CHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHH
EQMIAAAVGGDYASFERLMDALSHPFEAREDYADLRRPPAEDEVVQATFCGT
HHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHEEEECCCC
>Mature Secondary Structure 
TLDIPFDNTYAQLAPEFYTRQAPTPVKAPRLLAFNDALATLLGIARGTDAELAQVFGGN
EEECCCCCHHHHHCHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHCCC
ELPEGADPLAQLYAGHQFGTYNPQLGDGRAVLLGEVVGTDGLRRDIQLKGSGPTPYSRRG
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCEEEECCCCCCCCCCC
DGRAWLGPVLREYVVSEAMHALGIPTTRALAAVETGETVWREGGLPGAVLTRVASSHLRV
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHCEE
GTFQIFAARGNTEALRSLTEYAIARHYPEAKGALGLLRAVRDAQVELVSAWMSVGFIHGV
EEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNTDNSSIAGETIDYGPCAFMDVYHPNRVFSSIDRTGRYAYGNQPQIAVWNLAQLATALI
HCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHH
QLEDDPESVLEEATEIVHAMPELLEDAWLRRFRAKIGLREVAEGDLELVSDLLGIMAQGQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHCCC
ADFTNTFRGLLDGTARDQFLEPEAFDVWESRWKDRLSREADPEALMARSNPVLIPRNHRI
CHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHH
EQMIAAAVGGDYASFERLMDALSHPFEAREDYADLRRPPAEDEVVQATFCGT
HHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA