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The map label for this gene is hfaC [H]

Identifier: 99080761

GI number: 99080761

Start: 980789

End: 982579

Strand: Direct

Name: hfaC [H]

Synonym: TM1040_0920

Alternate gene names: 99080761

Gene position: 980789-982579 (Clockwise)

Preceding gene: 99080760

Following gene: 99080765

Centisome position: 30.64

GC content: 61.75

Gene sequence:

>1791_bases
ATGTCCGGGATTTCGCTGACCTTTGGTGGCGATCCGGTGTTTTCCGACCTCGACCTCGTGGTGCAGCCCGGCGACCGGGT
TGCGCTTGTGGGGCGCAATGGCTCGGGTAAATCGACCTTGATGAAAGTCATGGCCGGTCTTGTGGAGGCGGATGCCGGCT
CCATCGTGATCCCGCCCGGAAATTCCGCCGGCTACATGGAGCAAGACCCCAAGATGGAGGGCTTTGCCACGCTGGGGGAT
TTTGCGGCCTCGGCACTGGAACCCGGCGAGCTTTATAAAGTGGAGCGCGCAGGCGAGGGGCTGAAGTTCGACCCCGCCCG
CCCGGTGGAAACCGCTTCGGGCGGGGAACGTCGGCGCGCGGCGCTGGCGAAACTCATGGCCGAGGCGCCCGAGCTGATGC
TCTTGGACGAGCCGACCAACCACCTTGATATCGAAGCGATTTCCTGGCTCGAGGGTGAGCTGGCCTCAACCCGTGCAGCC
TTTGTGCTGATCTCGCACGACCGCGCGTTTCTGCGCGCTCTGACCCGCGCGACCCTCTGGGTGGACCGCGGTCAGGTGCG
CCGTCAGGACAAGGGGTTCGAGCATTTTGAGGCGTGGCGCGACAAGGTTTGGGAAGACGAAGACATGCAGCGCCACAAGC
TCAACCGCCTGATCAAATCCGAAAGCCGCTGGGCGGTCGAAGGCATCTCGGCCCGGCGCAAACGCAACATGGGTCGGGTG
CGCGCTTTGCAGGATCTGAAATCCGAACGCGCGAGCCAGATCAAACGACAGGGCGCGGCGGCGATGGAGCTGGAGGCGGG
GCCAAAGTCCGGCCGCAAGGTTATCGAGGCCGAAGGTATCACCAAACGCTTTGGCGACAAACAGATCCTCAACCACTTCT
CCCTGACGGTGCAGCGCGGTGAGCGCGTCGCCTTTGTGGGGCCGAACGGCGTGGGCAAGACGACGCTGTTGAAGATGCTT
CTCGGGCAGGAAACGCCGGATGAGGGCACAGTCAAACTGGGCACGAATCTGGAGGTCGCAGTCTTTGATCAGACCCGCGA
TCAGCTCGATGGCGATTCGAGCCTGTGGGAGAACCTCACCGCGGATCCCTTGATGGGGATTTCTGGCAAGGCAGATCAGG
TGATGGTGCGCGGACAGCCCAAACATGTGGTGGGCTATCTGAAGGAGTTCCTTTTTGATGAGCGCCAAGCCCGCGCACCG
GTGCGCTCGCTCTCGGGTGGGGAAAAGGCCCGGCTTCTGCTCGCGAAACTCATGGCGCGCCCATCGAACATGCTGGTGCT
GGACGAGCCGACCAACGACCTCGACGTGGAGACGCTTGATCTGTTGCAAGAGCTTCTGGACGCCTATGACGGCACCGTAC
TGCTGGTAAGTCACGACCGAGATTTCCTCGACCGGGTTGCGACGACCTCGGTTGCCATGGAAGGGCAGGGGCAGGCCACG
GTCTATGCGGGCGGCTGGAGCGACTACCTCGCGCAGCGCTCCCCCAAAGCGGCGCCTGAGAAGGTCGAGAAATCAAAACC
GGCAAAATCGAAACCAAAACCAGAGGCGCAGGCACCCAAAGAGGCGTTGAGTTTCAAGGAGAAACACCGGCTCGAGGCGC
TCCCGGACGAGATTGACCGTCTTGAGAAAGAGATCGCCAAACTCGAAGAGCTGATGGCCGATCCCGAGCTTTTCACCCGC
GAGCCGGTGAAGTTCAAAAAAGCCACAGAGGCCCTGGTGGAACGTCAGGAAAAACTCGCTGCTGCCGAGGAAGAATGGCT
GACGCTGGAAGAAAAAGCGGCTCAGGCTTGA

Upstream 100 bases:

>100_bases
CGGTGGCGGGCTAGGCCGCGCCCCCCGGCGCCATGATACATTGACGAAGAGAGCGGCGCGGTTTAGCTCCGCTCTCATGG
CACGTATTCCTCTTTTGCAG

Downstream 100 bases:

>100_bases
CGCGTCACAGGCATTCTCTGGTCTGCAGGGGAGGTGTTTCGCTTCGGGCAGAGCCCGAAGCGACCCGCGCCGCGCGCACC
CCTGCGGGGCGCGCGCGGCG

Product: ABC transporter related

Products: NA

Alternate protein names: Protein HfaC [H]

Number of amino acids: Translated: 596; Mature: 595

Protein sequence:

>596_residues
MSGISLTFGGDPVFSDLDLVVQPGDRVALVGRNGSGKSTLMKVMAGLVEADAGSIVIPPGNSAGYMEQDPKMEGFATLGD
FAASALEPGELYKVERAGEGLKFDPARPVETASGGERRRAALAKLMAEAPELMLLDEPTNHLDIEAISWLEGELASTRAA
FVLISHDRAFLRALTRATLWVDRGQVRRQDKGFEHFEAWRDKVWEDEDMQRHKLNRLIKSESRWAVEGISARRKRNMGRV
RALQDLKSERASQIKRQGAAAMELEAGPKSGRKVIEAEGITKRFGDKQILNHFSLTVQRGERVAFVGPNGVGKTTLLKML
LGQETPDEGTVKLGTNLEVAVFDQTRDQLDGDSSLWENLTADPLMGISGKADQVMVRGQPKHVVGYLKEFLFDERQARAP
VRSLSGGEKARLLLAKLMARPSNMLVLDEPTNDLDVETLDLLQELLDAYDGTVLLVSHDRDFLDRVATTSVAMEGQGQAT
VYAGGWSDYLAQRSPKAAPEKVEKSKPAKSKPKPEAQAPKEALSFKEKHRLEALPDEIDRLEKEIAKLEELMADPELFTR
EPVKFKKATEALVERQEKLAAAEEEWLTLEEKAAQA

Sequences:

>Translated_596_residues
MSGISLTFGGDPVFSDLDLVVQPGDRVALVGRNGSGKSTLMKVMAGLVEADAGSIVIPPGNSAGYMEQDPKMEGFATLGD
FAASALEPGELYKVERAGEGLKFDPARPVETASGGERRRAALAKLMAEAPELMLLDEPTNHLDIEAISWLEGELASTRAA
FVLISHDRAFLRALTRATLWVDRGQVRRQDKGFEHFEAWRDKVWEDEDMQRHKLNRLIKSESRWAVEGISARRKRNMGRV
RALQDLKSERASQIKRQGAAAMELEAGPKSGRKVIEAEGITKRFGDKQILNHFSLTVQRGERVAFVGPNGVGKTTLLKML
LGQETPDEGTVKLGTNLEVAVFDQTRDQLDGDSSLWENLTADPLMGISGKADQVMVRGQPKHVVGYLKEFLFDERQARAP
VRSLSGGEKARLLLAKLMARPSNMLVLDEPTNDLDVETLDLLQELLDAYDGTVLLVSHDRDFLDRVATTSVAMEGQGQAT
VYAGGWSDYLAQRSPKAAPEKVEKSKPAKSKPKPEAQAPKEALSFKEKHRLEALPDEIDRLEKEIAKLEELMADPELFTR
EPVKFKKATEALVERQEKLAAAEEEWLTLEEKAAQA
>Mature_595_residues
SGISLTFGGDPVFSDLDLVVQPGDRVALVGRNGSGKSTLMKVMAGLVEADAGSIVIPPGNSAGYMEQDPKMEGFATLGDF
AASALEPGELYKVERAGEGLKFDPARPVETASGGERRRAALAKLMAEAPELMLLDEPTNHLDIEAISWLEGELASTRAAF
VLISHDRAFLRALTRATLWVDRGQVRRQDKGFEHFEAWRDKVWEDEDMQRHKLNRLIKSESRWAVEGISARRKRNMGRVR
ALQDLKSERASQIKRQGAAAMELEAGPKSGRKVIEAEGITKRFGDKQILNHFSLTVQRGERVAFVGPNGVGKTTLLKMLL
GQETPDEGTVKLGTNLEVAVFDQTRDQLDGDSSLWENLTADPLMGISGKADQVMVRGQPKHVVGYLKEFLFDERQARAPV
RSLSGGEKARLLLAKLMARPSNMLVLDEPTNDLDVETLDLLQELLDAYDGTVLLVSHDRDFLDRVATTSVAMEGQGQATV
YAGGWSDYLAQRSPKAAPEKVEKSKPAKSKPKPEAQAPKEALSFKEKHRLEALPDEIDRLEKEIAKLEELMADPELFTRE
PVKFKKATEALVERQEKLAAAEEEWLTLEEKAAQA

Specific function: Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adhere to surfaces [H]

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI10947137, Length=516, Percent_Identity=27.1317829457364, Blast_Score=170, Evalue=3e-42,
Organism=Homo sapiens, GI27881506, Length=516, Percent_Identity=27.1317829457364, Blast_Score=170, Evalue=3e-42,
Organism=Homo sapiens, GI148612853, Length=542, Percent_Identity=28.2287822878229, Blast_Score=167, Evalue=2e-41,
Organism=Homo sapiens, GI69354671, Length=547, Percent_Identity=27.7879341864717, Blast_Score=156, Evalue=7e-38,
Organism=Homo sapiens, GI10947135, Length=547, Percent_Identity=27.7879341864717, Blast_Score=155, Evalue=7e-38,
Organism=Homo sapiens, GI171184400, Length=210, Percent_Identity=30.4761904761905, Blast_Score=73, Evalue=1e-12,
Organism=Homo sapiens, GI31657092, Length=203, Percent_Identity=32.512315270936, Blast_Score=71, Evalue=3e-12,
Organism=Escherichia coli, GI1787182, Length=632, Percent_Identity=38.2911392405063, Blast_Score=396, Evalue=1e-111,
Organism=Escherichia coli, GI2367384, Length=520, Percent_Identity=32.6923076923077, Blast_Score=283, Evalue=3e-77,
Organism=Escherichia coli, GI1787041, Length=536, Percent_Identity=30.7835820895522, Blast_Score=240, Evalue=2e-64,
Organism=Escherichia coli, GI1789751, Length=647, Percent_Identity=27.5115919629057, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI87081782, Length=486, Percent_Identity=27.5720164609054, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI48994943, Length=482, Percent_Identity=23.2365145228216, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1788165, Length=196, Percent_Identity=34.6938775510204, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1786253, Length=188, Percent_Identity=32.4468085106383, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081791, Length=199, Percent_Identity=29.6482412060301, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787164, Length=186, Percent_Identity=32.7956989247312, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789672, Length=239, Percent_Identity=26.3598326359833, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788225, Length=222, Percent_Identity=27.9279279279279, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1786563, Length=185, Percent_Identity=28.6486486486486, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=25.9259259259259, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787758, Length=192, Percent_Identity=30.2083333333333, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787089, Length=251, Percent_Identity=25.8964143426295, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081834, Length=216, Percent_Identity=30.0925925925926, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI48995001, Length=214, Percent_Identity=25.7009345794392, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787370, Length=205, Percent_Identity=25.3658536585366, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789891, Length=226, Percent_Identity=26.5486725663717, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87082267, Length=216, Percent_Identity=28.2407407407407, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1790467, Length=234, Percent_Identity=28.2051282051282, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=26.4423076923077, Blast_Score=63, Evalue=7e-11,
Organism=Escherichia coli, GI1788897, Length=213, Percent_Identity=27.6995305164319, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=541, Percent_Identity=26.2476894639556, Blast_Score=169, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI17555318, Length=528, Percent_Identity=26.3257575757576, Blast_Score=157, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17553372, Length=556, Percent_Identity=27.5179856115108, Blast_Score=153, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6320874, Length=536, Percent_Identity=26.865671641791, Blast_Score=154, Evalue=5e-38,
Organism=Saccharomyces cerevisiae, GI6321121, Length=395, Percent_Identity=28.3544303797468, Blast_Score=139, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6325030, Length=352, Percent_Identity=26.7045454545455, Blast_Score=107, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6324314, Length=219, Percent_Identity=31.5068493150685, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6323278, Length=349, Percent_Identity=23.7822349570201, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24642252, Length=564, Percent_Identity=28.7234042553192, Blast_Score=194, Evalue=2e-49,
Organism=Drosophila melanogaster, GI18859989, Length=564, Percent_Identity=28.7234042553192, Blast_Score=194, Evalue=2e-49,
Organism=Drosophila melanogaster, GI24666836, Length=543, Percent_Identity=27.9926335174954, Blast_Score=177, Evalue=3e-44,
Organism=Drosophila melanogaster, GI24641342, Length=549, Percent_Identity=27.1402550091075, Blast_Score=169, Evalue=4e-42,
Organism=Drosophila melanogaster, GI24641565, Length=155, Percent_Identity=32.9032258064516, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24666092, Length=211, Percent_Identity=30.3317535545024, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR007406 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 65801; Mature: 65669

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGISLTFGGDPVFSDLDLVVQPGDRVALVGRNGSGKSTLMKVMAGLVEADAGSIVIPPG
CCCCEEEECCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCC
NSAGYMEQDPKMEGFATLGDFAASALEPGELYKVERAGEGLKFDPARPVETASGGERRRA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHEEHHHCCCCCCCCCCCCCCCCCCCHHHHH
ALAKLMAEAPELMLLDEPTNHLDIEAISWLEGELASTRAAFVLISHDRAFLRALTRATLW
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHH
VDRGQVRRQDKGFEHFEAWRDKVWEDEDMQRHKLNRLIKSESRWAVEGISARRKRNMGRV
CCCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHH
RALQDLKSERASQIKRQGAAAMELEAGPKSGRKVIEAEGITKRFGDKQILNHFSLTVQRG
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCHHHHHCHHHHHHHHHHEEECC
ERVAFVGPNGVGKTTLLKMLLGQETPDEGTVKLGTNLEVAVFDQTRDQLDGDSSLWENLT
CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCHHHHCCCCHHHHHCCC
ADPLMGISGKADQVMVRGQPKHVVGYLKEFLFDERQARAPVRSLSGGEKARLLLAKLMAR
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHCCHHHCCCCHHHHHHHHHHHCC
PSNMLVLDEPTNDLDVETLDLLQELLDAYDGTVLLVSHDRDFLDRVATTSVAMEGQGQAT
CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHEECCCCCEE
VYAGGWSDYLAQRSPKAAPEKVEKSKPAKSKPKPEAQAPKEALSFKEKHRLEALPDEIDR
EEECCHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
LEKEIAKLEELMADPELFTREPVKFKKATEALVERQEKLAAAEEEWLTLEEKAAQA
HHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGISLTFGGDPVFSDLDLVVQPGDRVALVGRNGSGKSTLMKVMAGLVEADAGSIVIPPG
CCCEEEECCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCC
NSAGYMEQDPKMEGFATLGDFAASALEPGELYKVERAGEGLKFDPARPVETASGGERRRA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHEEHHHCCCCCCCCCCCCCCCCCCCHHHHH
ALAKLMAEAPELMLLDEPTNHLDIEAISWLEGELASTRAAFVLISHDRAFLRALTRATLW
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHH
VDRGQVRRQDKGFEHFEAWRDKVWEDEDMQRHKLNRLIKSESRWAVEGISARRKRNMGRV
CCCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHH
RALQDLKSERASQIKRQGAAAMELEAGPKSGRKVIEAEGITKRFGDKQILNHFSLTVQRG
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCHHHHHCHHHHHHHHHHEEECC
ERVAFVGPNGVGKTTLLKMLLGQETPDEGTVKLGTNLEVAVFDQTRDQLDGDSSLWENLT
CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCHHHHCCCCHHHHHCCC
ADPLMGISGKADQVMVRGQPKHVVGYLKEFLFDERQARAPVRSLSGGEKARLLLAKLMAR
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHCCHHHCCCCHHHHHHHHHHHCC
PSNMLVLDEPTNDLDVETLDLLQELLDAYDGTVLLVSHDRDFLDRVATTSVAMEGQGQAT
CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHEECCCCCEE
VYAGGWSDYLAQRSPKAAPEKVEKSKPAKSKPKPEAQAPKEALSFKEKHRLEALPDEIDR
EEECCHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
LEKEIAKLEELMADPELFTREPVKFKKATEALVERQEKLAAAEEEWLTLEEKAAQA
HHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11259647; 8150261 [H]