| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080740
Identifier: 99080740
GI number: 99080740
Start: 959653
End: 960717
Strand: Direct
Name: 99080740
Synonym: TM1040_0899
Alternate gene names: NA
Gene position: 959653-960717 (Clockwise)
Preceding gene: 99080737
Following gene: 99080741
Centisome position: 29.98
GC content: 56.43
Gene sequence:
>1065_bases ATGGGGCAGGTGCTTTCATTTCGCAATGCGCAAGAGAAAAAAATCCGTGAAGGAGCGCCTTTTCTTTTGAATTCATTTGG CTCTTTTCGCAAAGATCCACTGGATGTTTTGTGGATGAAGGAAAATGCAGAGCTGCTCAATGTGTTGGAAACCACAGGTT GCACTTTAAATGAGGGTGCATTGGAGCCGCTTTTGCCATTTTACGAAGGCAGCCTGCGGCACCTGAATTTCTTCCGCCAG TATTATCGTTTCATCCTGTCGATCTGCCTCGATCTGGAGGATCTCGGGGTGCCGGGTCAACGAGCCGAGATCATGTCCGA TTGGATCATGCGTCAAGACGTGGCGGCGGCTGAACTTTCGGATTTGCAGCGGGCCGAGGCGCGACGCCTTTTGGCGCGGC GCGGGTTCGAATTGCCCGACGTCGAAGGGCTGGATGACCGGCTGCGGGCCTTTATGCAGCGCTCTGGCGGATTTGCGGTG CCCAATCGCAAGGCTGCCTATGAGTTGACCCATATTGTCTTTTACCTCACCGAATACGGTCGCGCGCCCCTCGAACTGGA AGAAACAGAGCGTCAAAGCCTGTTGTTTGCCGGGTTGATCGCCTTTCTCGATCAGGATGCGGATCTTCTAGCGGAAATCT GCATCGCGCTTCGTTTCTGCAATGAGGCCCCTCCACAGGAATGGAGCCGTTGGCTGGAGCAACACACAGGGAAATTTACC CTGCGCGCGGCGCCCGGACGAGTGGGGCAGGACGACTACCATCCCTACCTTATGTGCAATTGGTTTCAACTTCTGGTTGG ACGGACTGGGTTTTCTGAGGCACAGTGCGAGGGTTCAGTTGTGATTGAAGGGCCGGGGCGTCCCGGCGCGTTACGAGGCA TGTCGATGGCACTCTATACCCTGCTTGATCAGGCGCCCGGGACCTGGGCGCGGGTGCGCGCGCCTCTATTGCAGTCGCTC AGTTCCGAAGAGGGGGAGGTTCTGCGCCGCGCTGAGGAAAGCACGCCCTTGTTCGAGCCCTTTTTCGAGACATTTTCGCG CTTTGGCCAGGTGAGTAGCGCATGA
Upstream 100 bases:
>100_bases ATTGAGAGCTGAGTTTTACTCCGTCTCGATTGAAATGCGTTTCGGTGACCCAATTGTGTTGGGTTGCCGAAGATCAATTT AATGATCTTGAGGTCTATTC
Downstream 100 bases:
>100_bases GCCCTGTCGCCACAGGGGTCCTGGCCGTCTTGCTCTATACGGGGCTGATCGCGGCGGCGGATGGGATCGTGAAACTGATG GCTGGGGGATTTGCTCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MGQVLSFRNAQEKKIREGAPFLLNSFGSFRKDPLDVLWMKENAELLNVLETTGCTLNEGALEPLLPFYEGSLRHLNFFRQ YYRFILSICLDLEDLGVPGQRAEIMSDWIMRQDVAAAELSDLQRAEARRLLARRGFELPDVEGLDDRLRAFMQRSGGFAV PNRKAAYELTHIVFYLTEYGRAPLELEETERQSLLFAGLIAFLDQDADLLAEICIALRFCNEAPPQEWSRWLEQHTGKFT LRAAPGRVGQDDYHPYLMCNWFQLLVGRTGFSEAQCEGSVVIEGPGRPGALRGMSMALYTLLDQAPGTWARVRAPLLQSL SSEEGEVLRRAEESTPLFEPFFETFSRFGQVSSA
Sequences:
>Translated_354_residues MGQVLSFRNAQEKKIREGAPFLLNSFGSFRKDPLDVLWMKENAELLNVLETTGCTLNEGALEPLLPFYEGSLRHLNFFRQ YYRFILSICLDLEDLGVPGQRAEIMSDWIMRQDVAAAELSDLQRAEARRLLARRGFELPDVEGLDDRLRAFMQRSGGFAV PNRKAAYELTHIVFYLTEYGRAPLELEETERQSLLFAGLIAFLDQDADLLAEICIALRFCNEAPPQEWSRWLEQHTGKFT LRAAPGRVGQDDYHPYLMCNWFQLLVGRTGFSEAQCEGSVVIEGPGRPGALRGMSMALYTLLDQAPGTWARVRAPLLQSL SSEEGEVLRRAEESTPLFEPFFETFSRFGQVSSA >Mature_353_residues GQVLSFRNAQEKKIREGAPFLLNSFGSFRKDPLDVLWMKENAELLNVLETTGCTLNEGALEPLLPFYEGSLRHLNFFRQY YRFILSICLDLEDLGVPGQRAEIMSDWIMRQDVAAAELSDLQRAEARRLLARRGFELPDVEGLDDRLRAFMQRSGGFAVP NRKAAYELTHIVFYLTEYGRAPLELEETERQSLLFAGLIAFLDQDADLLAEICIALRFCNEAPPQEWSRWLEQHTGKFTL RAAPGRVGQDDYHPYLMCNWFQLLVGRTGFSEAQCEGSVVIEGPGRPGALRGMSMALYTLLDQAPGTWARVRAPLLQSLS SEEGEVLRRAEESTPLFEPFFETFSRFGQVSSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40149; Mature: 40018
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQVLSFRNAQEKKIREGAPFLLNSFGSFRKDPLDVLWMKENAELLNVLETTGCTLNEGA CCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCC LEPLLPFYEGSLRHLNFFRQYYRFILSICLDLEDLGVPGQRAEIMSDWIMRQDVAAAELS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH DLQRAEARRLLARRGFELPDVEGLDDRLRAFMQRSGGFAVPNRKAAYELTHIVFYLTEYG HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC RAPLELEETERQSLLFAGLIAFLDQDADLLAEICIALRFCNEAPPQEWSRWLEQHTGKFT CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEE LRAAPGRVGQDDYHPYLMCNWFQLLVGRTGFSEAQCEGSVVIEGPGRPGALRGMSMALYT EEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH LLDQAPGTWARVRAPLLQSLSSEEGEVLRRAEESTPLFEPFFETFSRFGQVSSA HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure GQVLSFRNAQEKKIREGAPFLLNSFGSFRKDPLDVLWMKENAELLNVLETTGCTLNEGA CCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCC LEPLLPFYEGSLRHLNFFRQYYRFILSICLDLEDLGVPGQRAEIMSDWIMRQDVAAAELS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH DLQRAEARRLLARRGFELPDVEGLDDRLRAFMQRSGGFAVPNRKAAYELTHIVFYLTEYG HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC RAPLELEETERQSLLFAGLIAFLDQDADLLAEICIALRFCNEAPPQEWSRWLEQHTGKFT CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEE LRAAPGRVGQDDYHPYLMCNWFQLLVGRTGFSEAQCEGSVVIEGPGRPGALRGMSMALYT EEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH LLDQAPGTWARVRAPLLQSLSSEEGEVLRRAEESTPLFEPFFETFSRFGQVSSA HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA