Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99080741

Identifier: 99080741

GI number: 99080741

Start: 960714

End: 961715

Strand: Direct

Name: 99080741

Synonym: TM1040_0900

Alternate gene names: NA

Gene position: 960714-961715 (Clockwise)

Preceding gene: 99080740

Following gene: 99080743

Centisome position: 30.01

GC content: 61.18

Gene sequence:

>1002_bases
ATGAGCCCTGTCGCCACAGGGGTCCTGGCCGTCTTGCTCTATACGGGGCTGATCGCGGCGGCGGATGGGATCGTGAAACT
GATGGCTGGGGGATTTGCTCCGGCGCAGCTTTTTGCTTTGTCGGGTCTTTTGGTGGCGGGGTTCTGTGTTATCGCGGGGC
GGCTGCAGGGGCATCCTGACGGTCTGCGCACCAACTGCAAACGGGCGATGTTGCTGCGATCGGGCGCAACTGTGCTGTCC
TGCACTTCCTTCTTTTTTGCGTTTCGCTATCTGGCATTGGCCGAGGTGTTTGTCTTTATCGCGCTGATGCCGCTGATGGC
GGCGATGATGTCGGGGCTGATCCTCAAGGAGCGCATCCGCCCCGTTGTCTGGCTGGCGCTGAGCCTTGGGGTGATCGGCA
TTCTGGTGATGCGTCCCACGGTGCAGGTCGGAGGGGCTCTTGGGTCGGCGCTGGCGTTGAGCGGGGTTGGGTTTGGGACG
CTGTCGATCATCATGGCGCGCTACATCAGCCGATACGAGAGCAACGTGCTGGCGCAGGTCTTCTATCCGAACCTGACGCT
TGGGCTGGTGATGCTCTGTGTGTTGCCACTGGTCTGGCGACCGATGACGGCAGCTGATCTGGCGCTGGTCGGGGCCTATG
CGGTCCTGCTGTTTGGGGCGCGTTGGCTGTTGGTATTAGCGCTGCGGCAGCTGCCGGCCTATACGGTGACACCGCTTCTC
AATCTGCAATTTGTCTGGATGGCGCTGATCGGATTGATGTTCTTTGGTGAAGTGCCATTTGTATCAACCTATTTGGGCAT
GGCGGTTGTTGCGGCATCGGGTCTCTTTTTGGTCTGGGATCAGGCTCAAACTCAAACACCCGTCCGCACTGAGGCGCCTA
TGGCGACGATTGCCTCGGACAAATATCGTCGTGGGAACAGGGCGCCTGCACGCGGCGTTCGGCGCAATGACCGGCGCAGT
GGCGCTTGGCGCACGCGGCGCCGGGTGCAGTCCGGCCGCTAA

Upstream 100 bases:

>100_bases
GTTCCGAAGAGGGGGAGGTTCTGCGCCGCGCTGAGGAAAGCACGCCCTTGTTCGAGCCCTTTTTCGAGACATTTTCGCGC
TTTGGCCAGGTGAGTAGCGC

Downstream 100 bases:

>100_bases
GTGCGTCGCGCGCGCGAGTGATGTGCGAGATTGTGTGCGCTGGCCGGGGGGGGCAGCGCGTAACTTCAATTCTTCGTAGG
TCCGATGCCCAAGAGGGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPDGLRTNCKRAMLLRSGATVLS
CTSFFFAFRYLALAEVFVFIALMPLMAAMMSGLILKERIRPVVWLALSLGVIGILVMRPTVQVGGALGSALALSGVGFGT
LSIIMARYISRYESNVLAQVFYPNLTLGLVMLCVLPLVWRPMTAADLALVGAYAVLLFGARWLLVLALRQLPAYTVTPLL
NLQFVWMALIGLMFFGEVPFVSTYLGMAVVAASGLFLVWDQAQTQTPVRTEAPMATIASDKYRRGNRAPARGVRRNDRRS
GAWRTRRRVQSGR

Sequences:

>Translated_333_residues
MSPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPDGLRTNCKRAMLLRSGATVLS
CTSFFFAFRYLALAEVFVFIALMPLMAAMMSGLILKERIRPVVWLALSLGVIGILVMRPTVQVGGALGSALALSGVGFGT
LSIIMARYISRYESNVLAQVFYPNLTLGLVMLCVLPLVWRPMTAADLALVGAYAVLLFGARWLLVLALRQLPAYTVTPLL
NLQFVWMALIGLMFFGEVPFVSTYLGMAVVAASGLFLVWDQAQTQTPVRTEAPMATIASDKYRRGNRAPARGVRRNDRRS
GAWRTRRRVQSGR
>Mature_332_residues
SPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPDGLRTNCKRAMLLRSGATVLSC
TSFFFAFRYLALAEVFVFIALMPLMAAMMSGLILKERIRPVVWLALSLGVIGILVMRPTVQVGGALGSALALSGVGFGTL
SIIMARYISRYESNVLAQVFYPNLTLGLVMLCVLPLVWRPMTAADLALVGAYAVLLFGARWLLVLALRQLPAYTVTPLLN
LQFVWMALIGLMFFGEVPFVSTYLGMAVVAASGLFLVWDQAQTQTPVRTEAPMATIASDKYRRGNRAPARGVRRNDRRSG
AWRTRRRVQSGR

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35934; Mature: 35802

Theoretical pI: Translated: 11.58; Mature: 11.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
GLRTNCKRAMLLRSGATVLSCTSFFFAFRYLALAEVFVFIALMPLMAAMMSGLILKERIR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVVWLALSLGVIGILVMRPTVQVGGALGSALALSGVGFGTLSIIMARYISRYESNVLAQV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
FYPNLTLGLVMLCVLPLVWRPMTAADLALVGAYAVLLFGARWLLVLALRQLPAYTVTPLL
HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
NLQFVWMALIGLMFFGEVPFVSTYLGMAVVAASGLFLVWDQAQTQTPVRTEAPMATIASD
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHH
KYRRGNRAPARGVRRNDRRSGAWRTRRRVQSGR
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC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HHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA