Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080734
Identifier: 99080734
GI number: 99080734
Start: 953503
End: 954951
Strand: Reverse
Name: 99080734
Synonym: TM1040_0893
Alternate gene names: NA
Gene position: 954951-953503 (Counterclockwise)
Preceding gene: 99080735
Following gene: 99080733
Centisome position: 29.83
GC content: 68.12
Gene sequence:
>1449_bases TTGCCAAGGCGGACCAGAGACGTGCATGTGACCTTTTCTTCCCCCTGGGGCGCGCTCGAACGCGTCTTGCCTTCGCTCCG GGCGCTGCGCCTCAAGACGGTTTTTCTGGGCTGCGCGCTCCTGCTGGCCTGCACCCCCGCCGAGACGCCGCCCTCGCGCG CGTCGGCCTCACTGGCGATGGACCTGCCCCCCATCCGCACCTTTGCCACCCGCGCGGCTTCGCCGCCGCTGCGCTCCAAT GCGGATATGGCGCGGGATTTTCTCGATCTGCATTTTCGTCTTGAGGGCGGCACCACCATGCCGGTCTTCACCCGTTTCGA AGGCCCGGTGAGCGTCGCGGTCACCGGCACCGCCCCCGCCACGCTGCGCATGGATCTTGAGGCACTGCTGACGCGCCTGC GCCGCGAGGCCGGGATCAACGTCCGCCTGCGCACGCAAGGCGAGGTGCCCGCCTCCGTGACCATCGAGGCCGTGAGCCGC GCGCGCATTCAACGTCTTTTGCCGCATGCCGCCTGTTTCGTGGTACCAAATGTCAGCTCGATCGAGGAATACCGCCGCGC GCGCCGCCTGCCGCAAACCGACTGGAAAAACCTGCGCAACCGCGAGCGGCTGGCGATCTTTGTGCCCAATGATGTGAACC CGCAAGAGCTGCGCGACTGCCTGCACGAGGAACTGGCGCAGGCGCTGGGGCCGCTCAATGACCTCTATCGCCTGCGAGAT TCGGTCTTTAACGACGACAATGTACATGCGGTGCTGACCGGCTTTGACATGCTGATGCTGCGCGCAACCTACGACCCCTC CCTCAAAACCGGCATGACTCGCGAAGAGGTCGCCGCGCGCCTGCCCGCGATCCTTTCGCGGCTCAACCCTGCCGGCGCCC GCCGCGCCCCAGCCCCGCTGCCCCAGACCCCCAGCGCCTGGACTTCGGCGGTCGAGACTGCGCTCGGTGGCTCCGCAACA CGCGCCCAGCGCGTGCGCGCCGCCCATACGGCTGCCCATATCGCCGAGGCGCAGGGCTGGCAGGATCACCGCCGCGCCTT TGGGCATTTCCTGATCGGGCGGACGCTGGAAACATCTGCCCCCGAGCAGGCCGAAGCGCATTTTCGCACCGCGCTCAATT ACCTCGGCACCGGGCCGGACACCGCGCCGCATCGCGCCCTCAACCAGTCCCGCCTTGCTGCCTATGCGCTGCGCGCGGGC AATATCGCGCGCGCCGAACAGTTGATCGATACCGCCTATGGCGCTGCGCAAACCAGCCAGAACGCCGCCCTGATGGCCAC GCTTTTGACCCTGAAGGCGCATATCGCCGAGAGCCGCGGCGACCGTCGCCGCGCGACCGCCCTGCGCGCAGAGAGTGCCG GATGGGCACTCTATGGCAATGGTCCGGGCGCGGTCATCGCGATGACGCCGCGTGAGGTTGCCGCAGCCGGTCCTTCCCGG CGTCGCTGA
Upstream 100 bases:
>100_bases GCACACCGGCCCTATCTGCCATCAAAATCGGACCCGACTTCAAATTTTTGCCCAAATCATGTTCATACTGGGTGTCTTGG CCGGGAGATGATCCCGGATC
Downstream 100 bases:
>100_bases CCTTTGCACCTGCGCCAAAGCCGGGCTATATCCACGCCAAAGCCCCACCGGTCGTTCGTGTCGCCTATCGCAGACCCGGA CACCCCGAATTTTGGACCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 482; Mature: 481
Protein sequence:
>482_residues MPRRTRDVHVTFSSPWGALERVLPSLRALRLKTVFLGCALLLACTPAETPPSRASASLAMDLPPIRTFATRAASPPLRSN ADMARDFLDLHFRLEGGTTMPVFTRFEGPVSVAVTGTAPATLRMDLEALLTRLRREAGINVRLRTQGEVPASVTIEAVSR ARIQRLLPHAACFVVPNVSSIEEYRRARRLPQTDWKNLRNRERLAIFVPNDVNPQELRDCLHEELAQALGPLNDLYRLRD SVFNDDNVHAVLTGFDMLMLRATYDPSLKTGMTREEVAARLPAILSRLNPAGARRAPAPLPQTPSAWTSAVETALGGSAT RAQRVRAAHTAAHIAEAQGWQDHRRAFGHFLIGRTLETSAPEQAEAHFRTALNYLGTGPDTAPHRALNQSRLAAYALRAG NIARAEQLIDTAYGAAQTSQNAALMATLLTLKAHIAESRGDRRRATALRAESAGWALYGNGPGAVIAMTPREVAAAGPSR RR
Sequences:
>Translated_482_residues MPRRTRDVHVTFSSPWGALERVLPSLRALRLKTVFLGCALLLACTPAETPPSRASASLAMDLPPIRTFATRAASPPLRSN ADMARDFLDLHFRLEGGTTMPVFTRFEGPVSVAVTGTAPATLRMDLEALLTRLRREAGINVRLRTQGEVPASVTIEAVSR ARIQRLLPHAACFVVPNVSSIEEYRRARRLPQTDWKNLRNRERLAIFVPNDVNPQELRDCLHEELAQALGPLNDLYRLRD SVFNDDNVHAVLTGFDMLMLRATYDPSLKTGMTREEVAARLPAILSRLNPAGARRAPAPLPQTPSAWTSAVETALGGSAT RAQRVRAAHTAAHIAEAQGWQDHRRAFGHFLIGRTLETSAPEQAEAHFRTALNYLGTGPDTAPHRALNQSRLAAYALRAG NIARAEQLIDTAYGAAQTSQNAALMATLLTLKAHIAESRGDRRRATALRAESAGWALYGNGPGAVIAMTPREVAAAGPSR RR >Mature_481_residues PRRTRDVHVTFSSPWGALERVLPSLRALRLKTVFLGCALLLACTPAETPPSRASASLAMDLPPIRTFATRAASPPLRSNA DMARDFLDLHFRLEGGTTMPVFTRFEGPVSVAVTGTAPATLRMDLEALLTRLRREAGINVRLRTQGEVPASVTIEAVSRA RIQRLLPHAACFVVPNVSSIEEYRRARRLPQTDWKNLRNRERLAIFVPNDVNPQELRDCLHEELAQALGPLNDLYRLRDS VFNDDNVHAVLTGFDMLMLRATYDPSLKTGMTREEVAARLPAILSRLNPAGARRAPAPLPQTPSAWTSAVETALGGSATR AQRVRAAHTAAHIAEAQGWQDHRRAFGHFLIGRTLETSAPEQAEAHFRTALNYLGTGPDTAPHRALNQSRLAAYALRAGN IARAEQLIDTAYGAAQTSQNAALMATLLTLKAHIAESRGDRRRATALRAESAGWALYGNGPGAVIAMTPREVAAAGPSRR R
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52622; Mature: 52491
Theoretical pI: Translated: 11.29; Mature: 11.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRRTRDVHVTFSSPWGALERVLPSLRALRLKTVFLGCALLLACTPAETPPSRASASLAM CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE DLPPIRTFATRAASPPLRSNADMARDFLDLHFRLEGGTTMPVFTRFEGPVSVAVTGTAPA CCCCHHHHHHHCCCCCCCCCHHHHHHHHHEEEEECCCCCCCEEEECCCCEEEEEECCCCC TLRMDLEALLTRLRREAGINVRLRTQGEVPASVTIEAVSRARIQRLLPHAACFVVPNVSS EEHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHEEEECCHHH IEEYRRARRLPQTDWKNLRNRERLAIFVPNDVNPQELRDCLHEELAQALGPLNDLYRLRD HHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH SVFNDDNVHAVLTGFDMLMLRATYDPSLKTGMTREEVAARLPAILSRLNPAGARRAPAPL HHCCCCCCEEEEHHHHHHHHEECCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC PQTPSAWTSAVETALGGSATRAQRVRAAHTAAHIAEAQGWQDHRRAFGHFLIGRTLETSA CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC PEQAEAHFRTALNYLGTGPDTAPHRALNQSRLAAYALRAGNIARAEQLIDTAYGAAQTSQ CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCC NAALMATLLTLKAHIAESRGDRRRATALRAESAGWALYGNGPGAVIAMTPREVAAAGPSR CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHCCCCC RR CC >Mature Secondary Structure PRRTRDVHVTFSSPWGALERVLPSLRALRLKTVFLGCALLLACTPAETPPSRASASLAM CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE DLPPIRTFATRAASPPLRSNADMARDFLDLHFRLEGGTTMPVFTRFEGPVSVAVTGTAPA CCCCHHHHHHHCCCCCCCCCHHHHHHHHHEEEEECCCCCCCEEEECCCCEEEEEECCCCC TLRMDLEALLTRLRREAGINVRLRTQGEVPASVTIEAVSRARIQRLLPHAACFVVPNVSS EEHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHEEEECCHHH IEEYRRARRLPQTDWKNLRNRERLAIFVPNDVNPQELRDCLHEELAQALGPLNDLYRLRD HHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH SVFNDDNVHAVLTGFDMLMLRATYDPSLKTGMTREEVAARLPAILSRLNPAGARRAPAPL HHCCCCCCEEEEHHHHHHHHEECCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC PQTPSAWTSAVETALGGSATRAQRVRAAHTAAHIAEAQGWQDHRRAFGHFLIGRTLETSA CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC PEQAEAHFRTALNYLGTGPDTAPHRALNQSRLAAYALRAGNIARAEQLIDTAYGAAQTSQ CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCC NAALMATLLTLKAHIAESRGDRRRATALRAESAGWALYGNGPGAVIAMTPREVAAAGPSR CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHCCCCC RR CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA