Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080735

Identifier: 99080735

GI number: 99080735

Start: 955075

End: 955914

Strand: Reverse

Name: 99080735

Synonym: TM1040_0894

Alternate gene names: NA

Gene position: 955914-955075 (Counterclockwise)

Preceding gene: 99080738

Following gene: 99080734

Centisome position: 29.86

GC content: 56.07

Gene sequence:

>840_bases
ATGTTATTTCAGGGCACTAAGGACTATGTGGCAACCGAAGACCTGAAAGTTGCAGTGAATGCTGCGGTCACTCTGGAGCG
CCCCTTGCTGGTCAAGGGCGAGCCGGGCACCGGCAAGACCGAGCTCGCCAAACAGGTGGCAGACGCCCTTGGGTTGCGCA
TGATCGAGTGGAACGTCAAATCCACCACCCGCGCGCAGCAGGGGCTCTATGAATACGATGCGGTGTCACGTCTGCGTGAC
AGCCAGCTCGGCGAAGAGCGCGTGCATGACGTCAAGAACTACATCAAGAAAGGCAAGCTCTGGGAGGCCTTTGAGGCCGA
CGAGAAAGTCGTGCTCCTGATTGATGAAATCGACAAGGCCGATATCGAGTTTCCCAACGATCTCTTGCAGGAACTCGATA
AGATGGAGTTTCACGTCTACGAGACCGGCGAAACCATCCGCGCCAAACATCGCCCCGTGATGATCATCACCTCCAATAAC
GAAAAAGAGCTGCCCGACGCGTTTTTGCGGCGCTGTTTCTTCCATTACATCCGCTTCCCCGATGCCGAGACGATGAAGAA
AATCGTCGAAGTGCATCACCCCGACATCAAACCCGACCTCTTGTCGGCGGCGCTCACGCAATTCTACGAAATCCGCGACA
CACAGGGGCTCAAGAAAAAACCCTCCACCTCGGAGGTGATCGACTGGCTGAAACTCCTGTTGGCCGAAGACCTGAGCCCC
GAGGATCTGAAACGCGACGGAGCAAATGCGCTGCCAAAACTGCACGGTGCCTTGCTCAAGAACGAACAGGATGTGCATTT
GTTTGAACGCCTCGCCTTTATGGCGCGACGTGGGCGCTGA

Upstream 100 bases:

>100_bases
AGTGCCGCGAATGTCACTACACAATAGTCACTCGCTGTGCTTATACCGGAGCCTGACATGCCAATTCGGCAATACTAAGG
CGCAACCGGAGGGAGAGTTC

Downstream 100 bases:

>100_bases
TGATGATCTGATGCGGGCCGGCTGCACACCGGCCCTATCTGCCATCAAAATCGGACCCGACTTCAAATTTTTGCCCAAAT
CATGTTCATACTGGGTGTCT

Product: ATPase

Products: NA

Alternate protein names: ATPase AAA Family; AAA ATPase Central Domain Protein; ATPase Central Domain-Containing Protein; AAA_5 ATPase; MoxR-Like ATPase; AAA ATPase; ATPase AAA Family Protein; AAA Family ATPase; ATPase-Like Protein; ATPase Associated With Various Cellular Activities; ATPase Aaa Family; Carbon Monoxide Dehydrogenase D Protein; Aaa ATPase; Chaperone ClpB; Oxidoreductase; MoxR Family ATPase; AAA ATPase Central RegionATPase; ATP-Dependent Protease LA Protein; MoxR-Like ATPases; CoxD-Like Protein; ATP-Dependent Protease Subunit; ClpA/ClpB Family Protein; AAA ATPase Family Protein; MoxR-Like ATPase CoxD; ATPase Protein

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVKSTTRAQQGLYEYDAVSRLRD
SQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKADIEFPNDLLQELDKMEFHVYETGETIRAKHRPVMIITSNN
EKELPDAFLRRCFFHYIRFPDAETMKKIVEVHHPDIKPDLLSAALTQFYEIRDTQGLKKKPSTSEVIDWLKLLLAEDLSP
EDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR

Sequences:

>Translated_279_residues
MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVKSTTRAQQGLYEYDAVSRLRD
SQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKADIEFPNDLLQELDKMEFHVYETGETIRAKHRPVMIITSNN
EKELPDAFLRRCFFHYIRFPDAETMKKIVEVHHPDIKPDLLSAALTQFYEIRDTQGLKKKPSTSEVIDWLKLLLAEDLSP
EDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR
>Mature_279_residues
MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVKSTTRAQQGLYEYDAVSRLRD
SQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKADIEFPNDLLQELDKMEFHVYETGETIRAKHRPVMIITSNN
EKELPDAFLRRCFFHYIRFPDAETMKKIVEVHHPDIKPDLLSAALTQFYEIRDTQGLKKKPSTSEVIDWLKLLLAEDLSP
EDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR

Specific function: Unknown

COG id: COG0714

COG function: function code R; MoxR-like ATPases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32042; Mature: 32042

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVK
CCCCCCCCHHCCCCHHEEEHHEEEECCCEEEECCCCCCHHHHHHHHHHHHCCEEEEECCC
STTRAQQGLYEYDAVSRLRDSQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCC
DIEFPNDLLQELDKMEFHVYETGETIRAKHRPVMIITSNNEKELPDAFLRRCFFHYIRFP
CCCCCHHHHHHHHHHHEEEEECCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
DAETMKKIVEVHHPDIKPDLLSAALTQFYEIRDTQGLKKKPSTSEVIDWLKLLLAEDLSP
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCH
EDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVK
CCCCCCCCHHCCCCHHEEEHHEEEECCCEEEECCCCCCHHHHHHHHHHHHCCEEEEECCC
STTRAQQGLYEYDAVSRLRDSQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCC
DIEFPNDLLQELDKMEFHVYETGETIRAKHRPVMIITSNNEKELPDAFLRRCFFHYIRFP
CCCCCHHHHHHHHHHHEEEEECCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
DAETMKKIVEVHHPDIKPDLLSAALTQFYEIRDTQGLKKKPSTSEVIDWLKLLLAEDLSP
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCH
EDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA