Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080735
Identifier: 99080735
GI number: 99080735
Start: 955075
End: 955914
Strand: Reverse
Name: 99080735
Synonym: TM1040_0894
Alternate gene names: NA
Gene position: 955914-955075 (Counterclockwise)
Preceding gene: 99080738
Following gene: 99080734
Centisome position: 29.86
GC content: 56.07
Gene sequence:
>840_bases ATGTTATTTCAGGGCACTAAGGACTATGTGGCAACCGAAGACCTGAAAGTTGCAGTGAATGCTGCGGTCACTCTGGAGCG CCCCTTGCTGGTCAAGGGCGAGCCGGGCACCGGCAAGACCGAGCTCGCCAAACAGGTGGCAGACGCCCTTGGGTTGCGCA TGATCGAGTGGAACGTCAAATCCACCACCCGCGCGCAGCAGGGGCTCTATGAATACGATGCGGTGTCACGTCTGCGTGAC AGCCAGCTCGGCGAAGAGCGCGTGCATGACGTCAAGAACTACATCAAGAAAGGCAAGCTCTGGGAGGCCTTTGAGGCCGA CGAGAAAGTCGTGCTCCTGATTGATGAAATCGACAAGGCCGATATCGAGTTTCCCAACGATCTCTTGCAGGAACTCGATA AGATGGAGTTTCACGTCTACGAGACCGGCGAAACCATCCGCGCCAAACATCGCCCCGTGATGATCATCACCTCCAATAAC GAAAAAGAGCTGCCCGACGCGTTTTTGCGGCGCTGTTTCTTCCATTACATCCGCTTCCCCGATGCCGAGACGATGAAGAA AATCGTCGAAGTGCATCACCCCGACATCAAACCCGACCTCTTGTCGGCGGCGCTCACGCAATTCTACGAAATCCGCGACA CACAGGGGCTCAAGAAAAAACCCTCCACCTCGGAGGTGATCGACTGGCTGAAACTCCTGTTGGCCGAAGACCTGAGCCCC GAGGATCTGAAACGCGACGGAGCAAATGCGCTGCCAAAACTGCACGGTGCCTTGCTCAAGAACGAACAGGATGTGCATTT GTTTGAACGCCTCGCCTTTATGGCGCGACGTGGGCGCTGA
Upstream 100 bases:
>100_bases AGTGCCGCGAATGTCACTACACAATAGTCACTCGCTGTGCTTATACCGGAGCCTGACATGCCAATTCGGCAATACTAAGG CGCAACCGGAGGGAGAGTTC
Downstream 100 bases:
>100_bases TGATGATCTGATGCGGGCCGGCTGCACACCGGCCCTATCTGCCATCAAAATCGGACCCGACTTCAAATTTTTGCCCAAAT CATGTTCATACTGGGTGTCT
Product: ATPase
Products: NA
Alternate protein names: ATPase AAA Family; AAA ATPase Central Domain Protein; ATPase Central Domain-Containing Protein; AAA_5 ATPase; MoxR-Like ATPase; AAA ATPase; ATPase AAA Family Protein; AAA Family ATPase; ATPase-Like Protein; ATPase Associated With Various Cellular Activities; ATPase Aaa Family; Carbon Monoxide Dehydrogenase D Protein; Aaa ATPase; Chaperone ClpB; Oxidoreductase; MoxR Family ATPase; AAA ATPase Central RegionATPase; ATP-Dependent Protease LA Protein; MoxR-Like ATPases; CoxD-Like Protein; ATP-Dependent Protease Subunit; ClpA/ClpB Family Protein; AAA ATPase Family Protein; MoxR-Like ATPase CoxD; ATPase Protein
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVKSTTRAQQGLYEYDAVSRLRD SQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKADIEFPNDLLQELDKMEFHVYETGETIRAKHRPVMIITSNN EKELPDAFLRRCFFHYIRFPDAETMKKIVEVHHPDIKPDLLSAALTQFYEIRDTQGLKKKPSTSEVIDWLKLLLAEDLSP EDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR
Sequences:
>Translated_279_residues MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVKSTTRAQQGLYEYDAVSRLRD SQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKADIEFPNDLLQELDKMEFHVYETGETIRAKHRPVMIITSNN EKELPDAFLRRCFFHYIRFPDAETMKKIVEVHHPDIKPDLLSAALTQFYEIRDTQGLKKKPSTSEVIDWLKLLLAEDLSP EDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR >Mature_279_residues MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVKSTTRAQQGLYEYDAVSRLRD SQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKADIEFPNDLLQELDKMEFHVYETGETIRAKHRPVMIITSNN EKELPDAFLRRCFFHYIRFPDAETMKKIVEVHHPDIKPDLLSAALTQFYEIRDTQGLKKKPSTSEVIDWLKLLLAEDLSP EDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR
Specific function: Unknown
COG id: COG0714
COG function: function code R; MoxR-like ATPases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32042; Mature: 32042
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVK CCCCCCCCHHCCCCHHEEEHHEEEECCCEEEECCCCCCHHHHHHHHHHHHCCEEEEECCC STTRAQQGLYEYDAVSRLRDSQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKA HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCC DIEFPNDLLQELDKMEFHVYETGETIRAKHRPVMIITSNNEKELPDAFLRRCFFHYIRFP CCCCCHHHHHHHHHHHEEEEECCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC DAETMKKIVEVHHPDIKPDLLSAALTQFYEIRDTQGLKKKPSTSEVIDWLKLLLAEDLSP CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCH EDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MLFQGTKDYVATEDLKVAVNAAVTLERPLLVKGEPGTGKTELAKQVADALGLRMIEWNVK CCCCCCCCHHCCCCHHEEEHHEEEECCCEEEECCCCCCHHHHHHHHHHHHCCEEEEECCC STTRAQQGLYEYDAVSRLRDSQLGEERVHDVKNYIKKGKLWEAFEADEKVVLLIDEIDKA HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCC DIEFPNDLLQELDKMEFHVYETGETIRAKHRPVMIITSNNEKELPDAFLRRCFFHYIRFP CCCCCHHHHHHHHHHHEEEEECCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC DAETMKKIVEVHHPDIKPDLLSAALTQFYEIRDTQGLKKKPSTSEVIDWLKLLLAEDLSP CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCH EDLKRDGANALPKLHGALLKNEQDVHLFERLAFMARRGR HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA