Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080620
Identifier: 99080620
GI number: 99080620
Start: 834865
End: 835524
Strand: Reverse
Name: 99080620
Synonym: TM1040_0779
Alternate gene names: NA
Gene position: 835524-834865 (Counterclockwise)
Preceding gene: 99080621
Following gene: 99080619
Centisome position: 26.1
GC content: 61.21
Gene sequence:
>660_bases ATGAAGTCACTGAAAGTTCTAATCGGTTGCGCGACCTCCTGTGTGGCGCTGGATGCATTCCTCGCGCGCGGGCATGACGC ATGGCAGTGCGACCTGTTGCACGCCGATAAGCCGACGAACCGGCATATCCAAGACGACATCCGCAATGTGCTGGGATGGG GTTGGGATTTGCTGTTGGTCTCGAACCCGCCCTGCACCCGGCTGTGCAATTCCGGCGTGCGCTGGCTGACAAAACCGCCG ACCGGACGCACGCTTGCCGAGATGTGGGCCGACCTTGATAAAGGTGCGGATCTGTTCTCGGATTGCTTAAATGCCCCGAT CCCGCATGTCGCGGTCGAAAACCCCGTGATGCACAAGCACGCACGCGAGCGAATCCGGAACTGGATCAAGCCTCAAATCG TGCAGCCATGGTGGTTCGGAGATCCGGCCTTCAAGGCGACAGGGCTCTACCTGCGCAACCTGCCCGATCTGGTGCCCACA AACAAACTTACCCCGCCACGCCCCGGCACAGACGATCACAAGCGCTGGTCAGCCATCCACCGGGCGCCGCCGGGGCCGGA TCGCTGGAAGTTTCGTAGCAAGACGTTCGCTGGGATGGCTGCCGCATGGGCCGACCAGTTTGGATCATGGGCGGCAGAGC ATACAGGAGAGGCAGCATGA
Upstream 100 bases:
>100_bases AGAACGAAGCGGCCCGCCTATACAGCGAGTGGCGCGCCTTACCGAAACCCCGTCCTGAGTTCCTTACCTGGGCGCACACC AAGCGAGAGAAGACCGCAGC
Downstream 100 bases:
>100_bases ACAAGGCCAACACAGTAGACACAAGCACAGAGGCGGTGGAGCGCGTCGCAAAAGAGATTTCAGGCCTTGCTTCGCGCGAA GCGGTTTCGATGATTCAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MKSLKVLIGCATSCVALDAFLARGHDAWQCDLLHADKPTNRHIQDDIRNVLGWGWDLLLVSNPPCTRLCNSGVRWLTKPP TGRTLAEMWADLDKGADLFSDCLNAPIPHVAVENPVMHKHARERIRNWIKPQIVQPWWFGDPAFKATGLYLRNLPDLVPT NKLTPPRPGTDDHKRWSAIHRAPPGPDRWKFRSKTFAGMAAAWADQFGSWAAEHTGEAA
Sequences:
>Translated_219_residues MKSLKVLIGCATSCVALDAFLARGHDAWQCDLLHADKPTNRHIQDDIRNVLGWGWDLLLVSNPPCTRLCNSGVRWLTKPP TGRTLAEMWADLDKGADLFSDCLNAPIPHVAVENPVMHKHARERIRNWIKPQIVQPWWFGDPAFKATGLYLRNLPDLVPT NKLTPPRPGTDDHKRWSAIHRAPPGPDRWKFRSKTFAGMAAAWADQFGSWAAEHTGEAA >Mature_219_residues MKSLKVLIGCATSCVALDAFLARGHDAWQCDLLHADKPTNRHIQDDIRNVLGWGWDLLLVSNPPCTRLCNSGVRWLTKPP TGRTLAEMWADLDKGADLFSDCLNAPIPHVAVENPVMHKHARERIRNWIKPQIVQPWWFGDPAFKATGLYLRNLPDLVPT NKLTPPRPGTDDHKRWSAIHRAPPGPDRWKFRSKTFAGMAAAWADQFGSWAAEHTGEAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24578; Mature: 24578
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLKVLIGCATSCVALDAFLARGHDAWQCDLLHADKPTNRHIQDDIRNVLGWGWDLLLV CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEE SNPPCTRLCNSGVRWLTKPPTGRTLAEMWADLDKGADLFSDCLNAPIPHVAVENPVMHKH CCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHH ARERIRNWIKPQIVQPWWFGDPAFKATGLYLRNLPDLVPTNKLTPPRPGTDDHKRWSAIH HHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH RAPPGPDRWKFRSKTFAGMAAAWADQFGSWAAEHTGEAA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKSLKVLIGCATSCVALDAFLARGHDAWQCDLLHADKPTNRHIQDDIRNVLGWGWDLLLV CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEE SNPPCTRLCNSGVRWLTKPPTGRTLAEMWADLDKGADLFSDCLNAPIPHVAVENPVMHKH CCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHH ARERIRNWIKPQIVQPWWFGDPAFKATGLYLRNLPDLVPTNKLTPPRPGTDDHKRWSAIH HHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH RAPPGPDRWKFRSKTFAGMAAAWADQFGSWAAEHTGEAA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA