Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080619

Identifier: 99080619

GI number: 99080619

Start: 833924

End: 834868

Strand: Reverse

Name: 99080619

Synonym: TM1040_0778

Alternate gene names: NA

Gene position: 834868-833924 (Counterclockwise)

Preceding gene: 99080620

Following gene: 99080618

Centisome position: 26.08

GC content: 58.2

Gene sequence:

>945_bases
ATGAACAAGGCCAACACAGTAGACACAAGCACAGAGGCGGTGGAGCGCGTCGCAAAAGAGATTTCAGGCCTTGCTTCGCG
CGAAGCGGTTTCGATGATTCAGGGGTGGGAGGACGCTTTCGAACTCTACCTCAAAGCGGCGGATCAGCTAAGCGCCCTCG
CCGCCGAACGTGACACCCTCGCCAATCAGGTCGAGGACTGCGCCCGGGAGTGCGCCAAGCTGGCCGAGGAGATCCAGAGG
CTGCAAGCGCAACTGGCGGAAACAAGGGCCTCGCTTTATGCCCTAGAAAAGGGAGTTTGGCGCGACGGATACCCTGACAA
GATTTCAGGCTCCGAGTGGTTTATCGCGCTTCTTGAAGACAATCGTCGCGTGGTCCTACGATCTCTGCCCGAAGAACACT
CCTACGACTACACGACCGCAGACGATACCTACTTGGCGGCATGGAAGATCAAGCGCTGGATGCAATTTCCGGATGCTAAC
TTCATCGCCCCTGACACCATCGTTCACACCACGGTCGAGCGGATCGAGCAGATCAAGGAAGAGGCGCGGAATGCGGCGCT
GGAGGAGGCGGCAGAGGTGGTCGCTCGTATCAAAAAGCCAACCATTCCTCCTATGTTTATGGGTCAAACCAGAGCGGAAG
CCTACGACATGGGGCAGCACAACGCATGCGAGTCAAAGGCCGAGTTGATCCGCACCCTGAAGTCCGAGCCAGCCCCGCAC
CCAGACTGCCCCGAGTGCAGCGGTTCAGGAATGCGGGATAGCGGCGGCGTGCAGCCTTGGGGCGATCATATCGACGCCCC
ATGCGACTGCGAGAACGCACCGGCACCACGCCAGAGCGTGCAGAAGGCTGCGGATAATCTGGCGAAAGGCCTACGATCGG
CAGGCTATTTCATTCCTTCAAGCATCATTTTCGATGTCATGGTTCAGAAGAAGAGTGCGTCATGA

Upstream 100 bases:

>100_bases
CGGATCGCTGGAAGTTTCGTAGCAAGACGTTCGCTGGGATGGCTGCCGCATGGGCCGACCAGTTTGGATCATGGGCGGCA
GAGCATACAGGAGAGGCAGC

Downstream 100 bases:

>100_bases
GCAGACCAAAGCTTCCAGATATTCCGACATTTGCGCGCCCTCCCTTCAAGACAGATGCGTATGGCCTGAAAATATGGGGC
GTCGATGAGTTTGGCGGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTLANQVEDCARECAKLAEEIQR
LQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLEDNRRVVLRSLPEEHSYDYTTADDTYLAAWKIKRWMQFPDAN
FIAPDTIVHTTVERIEQIKEEARNAALEEAAEVVARIKKPTIPPMFMGQTRAEAYDMGQHNACESKAELIRTLKSEPAPH
PDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSVQKAADNLAKGLRSAGYFIPSSIIFDVMVQKKSAS

Sequences:

>Translated_314_residues
MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTLANQVEDCARECAKLAEEIQR
LQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLEDNRRVVLRSLPEEHSYDYTTADDTYLAAWKIKRWMQFPDAN
FIAPDTIVHTTVERIEQIKEEARNAALEEAAEVVARIKKPTIPPMFMGQTRAEAYDMGQHNACESKAELIRTLKSEPAPH
PDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSVQKAADNLAKGLRSAGYFIPSSIIFDVMVQKKSAS
>Mature_314_residues
MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTLANQVEDCARECAKLAEEIQR
LQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLEDNRRVVLRSLPEEHSYDYTTADDTYLAAWKIKRWMQFPDAN
FIAPDTIVHTTVERIEQIKEEARNAALEEAAEVVARIKKPTIPPMFMGQTRAEAYDMGQHNACESKAELIRTLKSEPAPH
PDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSVQKAADNLAKGLRSAGYFIPSSIIFDVMVQKKSAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34796; Mature: 34796

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANQVEDCARECAKLAEEIQRLQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC
NRRVVLRSLPEEHSYDYTTADDTYLAAWKIKRWMQFPDANFIAPDTIVHTTVERIEQIKE
CCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
EARNAALEEAAEVVARIKKPTIPPMFMGQTRAEAYDMGQHNACESKAELIRTLKSEPAPH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
PDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSVQKAADNLAKGLRSAGYFIPS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
SIIFDVMVQKKSAS
HHHHHHHHHHCCCC
>Mature Secondary Structure
MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANQVEDCARECAKLAEEIQRLQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC
NRRVVLRSLPEEHSYDYTTADDTYLAAWKIKRWMQFPDANFIAPDTIVHTTVERIEQIKE
CCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
EARNAALEEAAEVVARIKKPTIPPMFMGQTRAEAYDMGQHNACESKAELIRTLKSEPAPH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
PDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSVQKAADNLAKGLRSAGYFIPS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
SIIFDVMVQKKSAS
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA