Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080619
Identifier: 99080619
GI number: 99080619
Start: 833924
End: 834868
Strand: Reverse
Name: 99080619
Synonym: TM1040_0778
Alternate gene names: NA
Gene position: 834868-833924 (Counterclockwise)
Preceding gene: 99080620
Following gene: 99080618
Centisome position: 26.08
GC content: 58.2
Gene sequence:
>945_bases ATGAACAAGGCCAACACAGTAGACACAAGCACAGAGGCGGTGGAGCGCGTCGCAAAAGAGATTTCAGGCCTTGCTTCGCG CGAAGCGGTTTCGATGATTCAGGGGTGGGAGGACGCTTTCGAACTCTACCTCAAAGCGGCGGATCAGCTAAGCGCCCTCG CCGCCGAACGTGACACCCTCGCCAATCAGGTCGAGGACTGCGCCCGGGAGTGCGCCAAGCTGGCCGAGGAGATCCAGAGG CTGCAAGCGCAACTGGCGGAAACAAGGGCCTCGCTTTATGCCCTAGAAAAGGGAGTTTGGCGCGACGGATACCCTGACAA GATTTCAGGCTCCGAGTGGTTTATCGCGCTTCTTGAAGACAATCGTCGCGTGGTCCTACGATCTCTGCCCGAAGAACACT CCTACGACTACACGACCGCAGACGATACCTACTTGGCGGCATGGAAGATCAAGCGCTGGATGCAATTTCCGGATGCTAAC TTCATCGCCCCTGACACCATCGTTCACACCACGGTCGAGCGGATCGAGCAGATCAAGGAAGAGGCGCGGAATGCGGCGCT GGAGGAGGCGGCAGAGGTGGTCGCTCGTATCAAAAAGCCAACCATTCCTCCTATGTTTATGGGTCAAACCAGAGCGGAAG CCTACGACATGGGGCAGCACAACGCATGCGAGTCAAAGGCCGAGTTGATCCGCACCCTGAAGTCCGAGCCAGCCCCGCAC CCAGACTGCCCCGAGTGCAGCGGTTCAGGAATGCGGGATAGCGGCGGCGTGCAGCCTTGGGGCGATCATATCGACGCCCC ATGCGACTGCGAGAACGCACCGGCACCACGCCAGAGCGTGCAGAAGGCTGCGGATAATCTGGCGAAAGGCCTACGATCGG CAGGCTATTTCATTCCTTCAAGCATCATTTTCGATGTCATGGTTCAGAAGAAGAGTGCGTCATGA
Upstream 100 bases:
>100_bases CGGATCGCTGGAAGTTTCGTAGCAAGACGTTCGCTGGGATGGCTGCCGCATGGGCCGACCAGTTTGGATCATGGGCGGCA GAGCATACAGGAGAGGCAGC
Downstream 100 bases:
>100_bases GCAGACCAAAGCTTCCAGATATTCCGACATTTGCGCGCCCTCCCTTCAAGACAGATGCGTATGGCCTGAAAATATGGGGC GTCGATGAGTTTGGCGGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTLANQVEDCARECAKLAEEIQR LQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLEDNRRVVLRSLPEEHSYDYTTADDTYLAAWKIKRWMQFPDAN FIAPDTIVHTTVERIEQIKEEARNAALEEAAEVVARIKKPTIPPMFMGQTRAEAYDMGQHNACESKAELIRTLKSEPAPH PDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSVQKAADNLAKGLRSAGYFIPSSIIFDVMVQKKSAS
Sequences:
>Translated_314_residues MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTLANQVEDCARECAKLAEEIQR LQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLEDNRRVVLRSLPEEHSYDYTTADDTYLAAWKIKRWMQFPDAN FIAPDTIVHTTVERIEQIKEEARNAALEEAAEVVARIKKPTIPPMFMGQTRAEAYDMGQHNACESKAELIRTLKSEPAPH PDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSVQKAADNLAKGLRSAGYFIPSSIIFDVMVQKKSAS >Mature_314_residues MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTLANQVEDCARECAKLAEEIQR LQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLEDNRRVVLRSLPEEHSYDYTTADDTYLAAWKIKRWMQFPDAN FIAPDTIVHTTVERIEQIKEEARNAALEEAAEVVARIKKPTIPPMFMGQTRAEAYDMGQHNACESKAELIRTLKSEPAPH PDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSVQKAADNLAKGLRSAGYFIPSSIIFDVMVQKKSAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34796; Mature: 34796
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANQVEDCARECAKLAEEIQRLQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLED HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC NRRVVLRSLPEEHSYDYTTADDTYLAAWKIKRWMQFPDANFIAPDTIVHTTVERIEQIKE CCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH EARNAALEEAAEVVARIKKPTIPPMFMGQTRAEAYDMGQHNACESKAELIRTLKSEPAPH HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC PDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSVQKAADNLAKGLRSAGYFIPS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH SIIFDVMVQKKSAS HHHHHHHHHHCCCC >Mature Secondary Structure MNKANTVDTSTEAVERVAKEISGLASREAVSMIQGWEDAFELYLKAADQLSALAAERDTL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANQVEDCARECAKLAEEIQRLQAQLAETRASLYALEKGVWRDGYPDKISGSEWFIALLED HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC NRRVVLRSLPEEHSYDYTTADDTYLAAWKIKRWMQFPDANFIAPDTIVHTTVERIEQIKE CCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH EARNAALEEAAEVVARIKKPTIPPMFMGQTRAEAYDMGQHNACESKAELIRTLKSEPAPH HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC PDCPECSGSGMRDSGGVQPWGDHIDAPCDCENAPAPRQSVQKAADNLAKGLRSAGYFIPS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH SIIFDVMVQKKSAS HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA