Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is yitW [H]
Identifier: 99080607
GI number: 99080607
Start: 822118
End: 822480
Strand: Reverse
Name: yitW [H]
Synonym: TM1040_0766
Alternate gene names: 99080607
Gene position: 822480-822118 (Counterclockwise)
Preceding gene: 99080608
Following gene: 99080606
Centisome position: 25.69
GC content: 56.75
Gene sequence:
>363_bases ATGACTGACGCTTCCGAACCGCTTGAAGGCACTCCGCTGATTGCGCCCTCCTCCGTGTCCCACGCGCTCTATGAGCCAGT GGTTGATGCCTGCCGTACTGTTTTTGACCCAGAGATCCCGGTCAACATCTATGATCTTGGGCTGATCTACACTGTTGAAA TTTCTGATGAAAACGACGTCAAAATCATCATGACCCTGACCGCCCCTGGCTGTCCGGTGGCAGGCGATATGCCCGGCTGG ATCGTCGATGCGGTCTCGCCCGTGCCCGGTGTCAAAAGCGTCGATGTGGAACTCACCTGGGAACCGCCCTGGGGCATGGA CATGATGTCGGATGAAGCCCGACTGGAACTCGGGTTCATGTAA
Upstream 100 bases:
>100_bases CCCCTTCAAAACCACTGCACGCGCGTGAATCGACCGCGATCTCTGGACCCTGCCTGCAGGTTTCCCTATATAAAACCTCA GATAACTGACCGAGGCTTGA
Downstream 100 bases:
>100_bases CCATGACCTGCGCTCGCAGGATCGTGATCTGAGACTGTCGCCTTTCCCTGACATCCGTGCCCCTTGATGGGCTACGCCAC ACCACCTAGGTTACAGGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 120; Mature: 119
Protein sequence:
>120_residues MTDASEPLEGTPLIAPSSVSHALYEPVVDACRTVFDPEIPVNIYDLGLIYTVEISDENDVKIIMTLTAPGCPVAGDMPGW IVDAVSPVPGVKSVDVELTWEPPWGMDMMSDEARLELGFM
Sequences:
>Translated_120_residues MTDASEPLEGTPLIAPSSVSHALYEPVVDACRTVFDPEIPVNIYDLGLIYTVEISDENDVKIIMTLTAPGCPVAGDMPGW IVDAVSPVPGVKSVDVELTWEPPWGMDMMSDEARLELGFM >Mature_119_residues TDASEPLEGTPLIAPSSVSHALYEPVVDACRTVFDPEIPVNIYDLGLIYTVEISDENDVKIIMTLTAPGCPVAGDMPGWI VDAVSPVPGVKSVDVELTWEPPWGMDMMSDEARLELGFM
Specific function: Unknown
COG id: COG2151
COG function: function code R; Predicted metal-sulfur cluster biosynthetic enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MIP18 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002744 [H]
Pfam domain/function: PF01883 DUF59 [H]
EC number: NA
Molecular weight: Translated: 12980; Mature: 12849
Theoretical pI: Translated: 3.54; Mature: 3.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDASEPLEGTPLIAPSSVSHALYEPVVDACRTVFDPEIPVNIYDLGLIYTVEISDENDV CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCE KIIMTLTAPGCPVAGDMPGWIVDAVSPVPGVKSVDVELTWEPPWGMDMMSDEARLELGFM EEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECC >Mature Secondary Structure TDASEPLEGTPLIAPSSVSHALYEPVVDACRTVFDPEIPVNIYDLGLIYTVEISDENDV CCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCE KIIMTLTAPGCPVAGDMPGWIVDAVSPVPGVKSVDVELTWEPPWGMDMMSDEARLELGFM EEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9025291; 9384377 [H]