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The map label for this gene is yebA [H]

Identifier: 94985616

GI number: 94985616

Start: 1608271

End: 1609374

Strand: Reverse

Name: yebA [H]

Synonym: Dgeo_1516

Alternate gene names: 94985616

Gene position: 1609374-1608271 (Counterclockwise)

Preceding gene: 94985617

Following gene: 94985609

Centisome position: 65.23

GC content: 68.57

Gene sequence:

>1104_bases
ATGAGGTCCCGCCTGCCCCAGCGTTCTGTCCTGTTGCTCGCCGTCACGCTTCTGTTGGGTGCGGCGGGCGCATACACCGT
CAAGCCGGGGGATACCCTCTATTCCATTGCACGCGCCCACGGCATCACCGTCACAGAATTGATGCGCCTCAATGGCCTCA
CCGAGACGACCATCGAGGTTGGGCAGACCCTGCGGCTGCCGGGGGACAGTGCGCCCACGCCCGCGCCGCCGCCCCCGGCG
ACCTCCACCCCTGACGGCGCGCCGCTGCCCCAGCCCGTTTCGGAAGGTACCGCTCAGATCGCGGGCGTGACGGTCTCGGC
CCCAATCAGCCTGCGGATGGGGGACGCTTTTGTGCTGCGCCTCAGCGGGCCGCGGGCCGGACAGGCCACGGTGCGGTTCC
CCAGCGAGATCGGGGAGGACGTGCGCCAGCCCGCCGAGAAGCTCACGCCCATCGGTGCGGCGGGCGAGTATGTGGTGCTG
GGTCGGGTGGTGTTGGGCAAGACTACGCCGGTCGTGTACGAGGTCCAGGTGGGCGGGGACCTGGTGCGCGGCCGCATTCC
GGTCACGGACCTGGGGCAGAGGGTGCAGCACCTCAACCTTCCCTCCAGCATCAGCCGCAAGCTGGAGGACCCCGGGCGCA
AGGCCGAGGAGGCCGCAGTCGAGCAAGCGTATGCCCGGCGCACCCCACAGGCCTGGACTCGGCCCTTTCAGCCTGCCGTC
AACGTGAAGGCGCAGTCGAGCGCATTCGGCCAGCCACGCACCTACGTGGCGGGCGGCCCGGTCCTGTACCACTACGGCAC
CGACTACCCCGCCCCGGTCGGCACCCCGGTCACGGCGGTCAACGATGGCACCGTCGTTCTGGCAGGCAAGTTTCCGGTGC
GCGGCAACCTGGTGGTCATCGACCACGGCGCCGGGCTGACCAGTCTGTACTTTCACCAAAGCCGCATTCTGGTCAAGCCG
GGCCAAAAGGTAAAGCGCGGCGAGAAGATCGGCGAGGTTGGTTCGACTGGCCTGAGCGCCGGACCTCACCTCCATCTCGA
AATGCGCGTGCGCGGCGAAGGCACCAACCCTGCCGGCTGGATGAACCGCATCTGGCCGAACTAA

Upstream 100 bases:

>100_bases
CTTGACCTGACCAACGACGGTCCGGTGACGCTGTTTCTCGACACCGCAGAAAGCTAAGGCTTTCACCTGTCCCTGCAGAC
GGCTCGCTATCCTGCGCCGC

Downstream 100 bases:

>100_bases
AAGCCCTGGGGACTGGCCCGCGTCCCCTCAAGCCGCCACCCTAGTCCGCCAGGTACCGAATAAAGTCCCGCATGTCGTTG
ACGCAGGAGCTGCCCTCGTG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MRSRLPQRSVLLLAVTLLLGAAGAYTVKPGDTLYSIARAHGITVTELMRLNGLTETTIEVGQTLRLPGDSAPTPAPPPPA
TSTPDGAPLPQPVSEGTAQIAGVTVSAPISLRMGDAFVLRLSGPRAGQATVRFPSEIGEDVRQPAEKLTPIGAAGEYVVL
GRVVLGKTTPVVYEVQVGGDLVRGRIPVTDLGQRVQHLNLPSSISRKLEDPGRKAEEAAVEQAYARRTPQAWTRPFQPAV
NVKAQSSAFGQPRTYVAGGPVLYHYGTDYPAPVGTPVTAVNDGTVVLAGKFPVRGNLVVIDHGAGLTSLYFHQSRILVKP
GQKVKRGEKIGEVGSTGLSAGPHLHLEMRVRGEGTNPAGWMNRIWPN

Sequences:

>Translated_367_residues
MRSRLPQRSVLLLAVTLLLGAAGAYTVKPGDTLYSIARAHGITVTELMRLNGLTETTIEVGQTLRLPGDSAPTPAPPPPA
TSTPDGAPLPQPVSEGTAQIAGVTVSAPISLRMGDAFVLRLSGPRAGQATVRFPSEIGEDVRQPAEKLTPIGAAGEYVVL
GRVVLGKTTPVVYEVQVGGDLVRGRIPVTDLGQRVQHLNLPSSISRKLEDPGRKAEEAAVEQAYARRTPQAWTRPFQPAV
NVKAQSSAFGQPRTYVAGGPVLYHYGTDYPAPVGTPVTAVNDGTVVLAGKFPVRGNLVVIDHGAGLTSLYFHQSRILVKP
GQKVKRGEKIGEVGSTGLSAGPHLHLEMRVRGEGTNPAGWMNRIWPN
>Mature_367_residues
MRSRLPQRSVLLLAVTLLLGAAGAYTVKPGDTLYSIARAHGITVTELMRLNGLTETTIEVGQTLRLPGDSAPTPAPPPPA
TSTPDGAPLPQPVSEGTAQIAGVTVSAPISLRMGDAFVLRLSGPRAGQATVRFPSEIGEDVRQPAEKLTPIGAAGEYVVL
GRVVLGKTTPVVYEVQVGGDLVRGRIPVTDLGQRVQHLNLPSSISRKLEDPGRKAEEAAVEQAYARRTPQAWTRPFQPAV
NVKAQSSAFGQPRTYVAGGPVLYHYGTDYPAPVGTPVTAVNDGTVVLAGKFPVRGNLVVIDHGAGLTSLYFHQSRILVKP
GQKVKRGEKIGEVGSTGLSAGPHLHLEMRVRGEGTNPAGWMNRIWPN

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=112, Percent_Identity=48.2142857142857, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI87082297, Length=116, Percent_Identity=37.0689655172414, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789099, Length=93, Percent_Identity=40.8602150537634, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87082174, Length=93, Percent_Identity=39.7849462365591, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 38813; Mature: 38813

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSRLPQRSVLLLAVTLLLGAAGAYTVKPGDTLYSIARAHGITVTELMRLNGLTETTIEV
CCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
GQTLRLPGDSAPTPAPPPPATSTPDGAPLPQPVSEGTAQIAGVTVSAPISLRMGDAFVLR
CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEEEEEECCEEEEECCEEEEE
LSGPRAGQATVRFPSEIGEDVRQPAEKLTPIGAAGEYVVLGRVVLGKTTPVVYEVQVGGD
ECCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCE
LVRGRIPVTDLGQRVQHLNLPSSISRKLEDPGRKAEEAAVEQAYARRTPQAWTRPFQPAV
EEECCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCC
NVKAQSSAFGQPRTYVAGGPVLYHYGTDYPAPVGTPVTAVNDGTVVLAGKFPVRGNLVVI
CCEECCCCCCCCCEEEECCCEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCEEEE
DHGAGLTSLYFHQSRILVKPGQKVKRGEKIGEVGSTGLSAGPHLHLEMRVRGEGTNPAGW
ECCCCCEEEEEECCEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCHHH
MNRIWPN
HHHCCCC
>Mature Secondary Structure
MRSRLPQRSVLLLAVTLLLGAAGAYTVKPGDTLYSIARAHGITVTELMRLNGLTETTIEV
CCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
GQTLRLPGDSAPTPAPPPPATSTPDGAPLPQPVSEGTAQIAGVTVSAPISLRMGDAFVLR
CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEEEEEECCEEEEECCEEEEE
LSGPRAGQATVRFPSEIGEDVRQPAEKLTPIGAAGEYVVLGRVVLGKTTPVVYEVQVGGD
ECCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCE
LVRGRIPVTDLGQRVQHLNLPSSISRKLEDPGRKAEEAAVEQAYARRTPQAWTRPFQPAV
EEECCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCC
NVKAQSSAFGQPRTYVAGGPVLYHYGTDYPAPVGTPVTAVNDGTVVLAGKFPVRGNLVVI
CCEECCCCCCCCCEEEECCCEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCEEEE
DHGAGLTSLYFHQSRILVKPGQKVKRGEKIGEVGSTGLSAGPHLHLEMRVRGEGTNPAGW
ECCCCCEEEEEECCEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCHHH
MNRIWPN
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]