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The map label for this gene is araQ [H]

Identifier: 94972293

GI number: 94972293

Start: 194901

End: 195794

Strand: Direct

Name: araQ [H]

Synonym: Dgeo_2830

Alternate gene names: 94972293

Gene position: 194901-195794 (Clockwise)

Preceding gene: 94972294

Following gene: 94972292

Centisome position: 33.95

GC content: 64.65

Gene sequence:

>894_bases
GTGACTCTGTCGCGTTCTGTCCCGGCGCAGGTGGCCCCGCGCGCTCGGTCCCGGCCCGGCTTCACGCCGCTGCAGCTGCT
TGCGCTGGTCCTCTTCGCCGCCTACTCGCTGCTGCCGCTGTGGTGGGTGCTGGTGACGATCTTCAAGGACAACGGCCAGC
TCTTTTCCTCCTTTGGCCTGTGGTTTGCCTCGCCGGGGCACCTCGCCCAGAACTGGCACACGCTGGTCACGCGCGATGAC
GGCATCTTCCTGCGCTGGCTGCTCAATAGCGTTCTGTATGCCGGAGCGTCGGCCATTGGGAGCATGTTCGTGAGCGCAGC
GGCAGGGTACGCCTTCAGCGCCTACGACTTCCGGGGCAAGAACGCCCTCTTCGCCCTCATCCTCGCCACGATCATGGTGC
CCGGCACTGCCCTTGTCCTGCCGCTCTTCCTGATGATGCAGAAGCTGGGGCTCCTCAACACCTCTTGGGCCGTCATCTTG
CCTGCGCTGGTGAGTCCTTTTGGGCTGTATCTGATGCGCCTCTTCTGGGACGCGGGGTTCCCGCGCGAGCTGATGGAAGC
CGCGCGCATTGACGGAGCCGGGGACTGGACCATCTTTCGGCAGCTCGGCCTGCCGCTGGTGCGCGGCGGCCTGGTCACGG
TGGGCCTCTTCGCATTCGTGGGTGCCTGGAACAACTTCTTCCTACCCCTGGTGGTTATCAACCGCAGCGAACTCTTTCCC
CTCACGCTGGGGCTGAGTGTCTGGAACCAGACCAGCAGTTCCAGCGGCCAGGAACCGCTCTATACCGTGATTGTACTGGG
GGCGCTGGTCAGTATCTTGCCGCTCCTGCTCGCTTTTCTCAGCCTCGGCCGCTTCTGGCAAGGCGGCCTGTCCTCCGGCG
CTGTGAAGGGCTGA

Upstream 100 bases:

>100_bases
GCAACTTCAGCTACGCGGCGGCGCTGGCCCTCCTGCTGGCGGTCTTCACGTTCCTGCTCAGTGCCGTCTTTCTGCGCCTG
ACCCGCCGGGGAGGGGCGCT

Downstream 100 bases:

>100_bases
GGCCTCATCAAGGACCCTGCATGAGTTATCCTGAATCCTCTACGCACCTCCAGCTGGGAGTGTGCGACTATCCCGAACAC
GTCTCCGAAGACCGTTGGCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTLSRSVPAQVAPRARSRPGFTPLQLLALVLFAAYSLLPLWWVLVTIFKDNGQLFSSFGLWFASPGHLAQNWHTLVTRDD
GIFLRWLLNSVLYAGASAIGSMFVSAAAGYAFSAYDFRGKNALFALILATIMVPGTALVLPLFLMMQKLGLLNTSWAVIL
PALVSPFGLYLMRLFWDAGFPRELMEAARIDGAGDWTIFRQLGLPLVRGGLVTVGLFAFVGAWNNFFLPLVVINRSELFP
LTLGLSVWNQTSSSSGQEPLYTVIVLGALVSILPLLLAFLSLGRFWQGGLSSGAVKG

Sequences:

>Translated_297_residues
MTLSRSVPAQVAPRARSRPGFTPLQLLALVLFAAYSLLPLWWVLVTIFKDNGQLFSSFGLWFASPGHLAQNWHTLVTRDD
GIFLRWLLNSVLYAGASAIGSMFVSAAAGYAFSAYDFRGKNALFALILATIMVPGTALVLPLFLMMQKLGLLNTSWAVIL
PALVSPFGLYLMRLFWDAGFPRELMEAARIDGAGDWTIFRQLGLPLVRGGLVTVGLFAFVGAWNNFFLPLVVINRSELFP
LTLGLSVWNQTSSSSGQEPLYTVIVLGALVSILPLLLAFLSLGRFWQGGLSSGAVKG
>Mature_296_residues
TLSRSVPAQVAPRARSRPGFTPLQLLALVLFAAYSLLPLWWVLVTIFKDNGQLFSSFGLWFASPGHLAQNWHTLVTRDDG
IFLRWLLNSVLYAGASAIGSMFVSAAAGYAFSAYDFRGKNALFALILATIMVPGTALVLPLFLMMQKLGLLNTSWAVILP
ALVSPFGLYLMRLFWDAGFPRELMEAARIDGAGDWTIFRQLGLPLVRGGLVTVGLFAFVGAWNNFFLPLVVINRSELFPL
TLGLSVWNQTSSSSGQEPLYTVIVLGALVSILPLLLAFLSLGRFWQGGLSSGAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=291, Percent_Identity=27.4914089347079, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789860, Length=279, Percent_Identity=26.1648745519713, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790464, Length=221, Percent_Identity=29.8642533936652, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32333; Mature: 32201

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSRSVPAQVAPRARSRPGFTPLQLLALVLFAAYSLLPLWWVLVTIFKDNGQLFSSFGL
CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
WFASPGHLAQNWHTLVTRDDGIFLRWLLNSVLYAGASAIGSMFVSAAAGYAFSAYDFRGK
HHCCCCCHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
NALFALILATIMVPGTALVLPLFLMMQKLGLLNTSWAVILPALVSPFGLYLMRLFWDAGF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PRELMEAARIDGAGDWTIFRQLGLPLVRGGLVTVGLFAFVGAWNNFFLPLVVINRSELFP
CHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
LTLGLSVWNQTSSSSGQEPLYTVIVLGALVSILPLLLAFLSLGRFWQGGLSSGAVKG
CEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TLSRSVPAQVAPRARSRPGFTPLQLLALVLFAAYSLLPLWWVLVTIFKDNGQLFSSFGL
CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
WFASPGHLAQNWHTLVTRDDGIFLRWLLNSVLYAGASAIGSMFVSAAAGYAFSAYDFRGK
HHCCCCCHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
NALFALILATIMVPGTALVLPLFLMMQKLGLLNTSWAVILPALVSPFGLYLMRLFWDAGF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PRELMEAARIDGAGDWTIFRQLGLPLVRGGLVTVGLFAFVGAWNNFFLPLVVINRSELFP
CHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
LTLGLSVWNQTSSSSGQEPLYTVIVLGALVSILPLLLAFLSLGRFWQGGLSSGAVKG
CEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]