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The map label for this gene is ycjO [C]

Identifier: 94972283

GI number: 94972283

Start: 208040

End: 208957

Strand: Direct

Name: ycjO [C]

Synonym: Dgeo_2820

Alternate gene names: 94972283

Gene position: 208040-208957 (Clockwise)

Preceding gene: 94972284

Following gene: 94972282

Centisome position: 36.24

GC content: 62.2

Gene sequence:

>918_bases
ATGACCTCGGCCCCCACCCAGACCCGGGGGCAGCTGCGGTCAGGCGGAGGCTTCTCCGCCTGGCTGGACCGGAACATCCG
TTGGGTGTTCCCGCTGCCTGCCGTTGTTGTGCTGTTTGCACTCACGATCCTGCCACTGCTCTTCAACCTGCTGCTGAGCA
CTCAGGACCGCTCGGTGAGTGACGCTTTACCCAGCCGTTTTGTAGGCCTCGGCAACTTTGTGCAGGCGTTTCATGACCCA
CGCTTCTGGAATGCCACCTGGTTGATGTTTAAGTTTACACTGCTCGCCGTGCCTCTCCAGATGGGGCTAGGCCTGGGGCT
TGCCCTGCTGCTCAACCGGCAGATCCGGGGGCAGGGCTTAGTCCGCGCCGTGGTGCTGTTGCCCATGATCAGCACGCCGG
TCGCCGTCGCGCTGATCTGGGCATTGATGATGGACCCCAACCTGGGCGTGCTGAACTACTTTCTGCAGACGCTGGGTCTG
GGCCGCAGCCTGTGGCTGGCTGATCCCCGACTGGCGATTCCGGCGCTGGCCTTGGTGGACATCTGGCAGTGGACACCGCT
GGTGGCATTGATCCTCCTGGCAGGTCTACAAACCATGCCCGACGACCCCTTCGAGGCCGCCCGCATCGACGGCGCAAGCA
ATTGGCAAGCCTTTCGCTATATCACTTGGCCGTTGCTGCAACCTGCGCTCTTTGCTGCGCTGACCATCCGCCTGATTGAC
GCCCTGAAAACCTTCGACATCATCGAGGTGATGACGCAAGGCGGCCCGGGCAACGCCAGCGAGACGCTCAACGTGTATGC
CTATCACACCGGCTTTGAGTTCCTCCGGGTAGGTTACACGGCCTCGCTGCTCACGCTGCTGCTGGTGATTGTGGCTGCGG
TCGCTCTTGGCGTCAACCTGCTGCGGAGGCGGATATGA

Upstream 100 bases:

>100_bases
TCAGGCCATCGTGGGGATCTTGCAGGGCGGTAACACCCTAGACCTGCTCAAGCGTGCCGAGCAGACCACCAACGCGATCA
TCAGCAAGGAAAAGTAATCC

Downstream 100 bases:

>100_bases
ACGGCCGGACACGCAGACTGAGCGCCCTGCTGCCCAATCGTGACTACTCAGCAGGGGGAGTTGATGTCTGCGGCAAGGTA
GAGTAGGGCATCACACAGGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MTSAPTQTRGQLRSGGGFSAWLDRNIRWVFPLPAVVVLFALTILPLLFNLLLSTQDRSVSDALPSRFVGLGNFVQAFHDP
RFWNATWLMFKFTLLAVPLQMGLGLGLALLLNRQIRGQGLVRAVVLLPMISTPVAVALIWALMMDPNLGVLNYFLQTLGL
GRSLWLADPRLAIPALALVDIWQWTPLVALILLAGLQTMPDDPFEAARIDGASNWQAFRYITWPLLQPALFAALTIRLID
ALKTFDIIEVMTQGGPGNASETLNVYAYHTGFEFLRVGYTASLLTLLLVIVAAVALGVNLLRRRI

Sequences:

>Translated_305_residues
MTSAPTQTRGQLRSGGGFSAWLDRNIRWVFPLPAVVVLFALTILPLLFNLLLSTQDRSVSDALPSRFVGLGNFVQAFHDP
RFWNATWLMFKFTLLAVPLQMGLGLGLALLLNRQIRGQGLVRAVVLLPMISTPVAVALIWALMMDPNLGVLNYFLQTLGL
GRSLWLADPRLAIPALALVDIWQWTPLVALILLAGLQTMPDDPFEAARIDGASNWQAFRYITWPLLQPALFAALTIRLID
ALKTFDIIEVMTQGGPGNASETLNVYAYHTGFEFLRVGYTASLLTLLLVIVAAVALGVNLLRRRI
>Mature_304_residues
TSAPTQTRGQLRSGGGFSAWLDRNIRWVFPLPAVVVLFALTILPLLFNLLLSTQDRSVSDALPSRFVGLGNFVQAFHDPR
FWNATWLMFKFTLLAVPLQMGLGLGLALLLNRQIRGQGLVRAVVLLPMISTPVAVALIWALMMDPNLGVLNYFLQTLGLG
RSLWLADPRLAIPALALVDIWQWTPLVALILLAGLQTMPDDPFEAARIDGASNWQAFRYITWPLLQPALFAALTIRLIDA
LKTFDIIEVMTQGGPGNASETLNVYAYHTGFEFLRVGYTASLLTLLLVIVAAVALGVNLLRRRI

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=264, Percent_Identity=31.0606060606061, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1789861, Length=235, Percent_Identity=31.4893617021277, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790465, Length=254, Percent_Identity=28.740157480315, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33646; Mature: 33515

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAPTQTRGQLRSGGGFSAWLDRNIRWVFPLPAVVVLFALTILPLLFNLLLSTQDRSVS
CCCCCCCHHHHHCCCCCCHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
DALPSRFVGLGNFVQAFHDPRFWNATWLMFKFTLLAVPLQMGLGLGLALLLNRQIRGQGL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VRAVVLLPMISTPVAVALIWALMMDPNLGVLNYFLQTLGLGRSLWLADPRLAIPALALVD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
IWQWTPLVALILLAGLQTMPDDPFEAARIDGASNWQAFRYITWPLLQPALFAALTIRLID
HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALKTFDIIEVMTQGGPGNASETLNVYAYHTGFEFLRVGYTASLLTLLLVIVAAVALGVNL
HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRRI
HHHCC
>Mature Secondary Structure 
TSAPTQTRGQLRSGGGFSAWLDRNIRWVFPLPAVVVLFALTILPLLFNLLLSTQDRSVS
CCCCCCHHHHHCCCCCCHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
DALPSRFVGLGNFVQAFHDPRFWNATWLMFKFTLLAVPLQMGLGLGLALLLNRQIRGQGL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VRAVVLLPMISTPVAVALIWALMMDPNLGVLNYFLQTLGLGRSLWLADPRLAIPALALVD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
IWQWTPLVALILLAGLQTMPDDPFEAARIDGASNWQAFRYITWPLLQPALFAALTIRLID
HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALKTFDIIEVMTQGGPGNASETLNVYAYHTGFEFLRVGYTASLLTLLLVIVAAVALGVNL
HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRRI
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]