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The map label for this gene is yhdI [H]

Identifier: 94972251

GI number: 94972251

Start: 238321

End: 239064

Strand: Direct

Name: yhdI [H]

Synonym: Dgeo_2785

Alternate gene names: 94972251

Gene position: 238321-239064 (Clockwise)

Preceding gene: 94972252

Following gene: 94972244

Centisome position: 41.51

GC content: 70.7

Gene sequence:

>744_bases
GTGGATGAAGATGGCCTGCGCGTGGCTGAACTCCCTGTGGGCGAGGCTGCCCCAACGCTGGTGTACACCACGCCCTCCCA
CCAGTTCCCGCTGGGCAGCCGCCTCTCCCTCCCGCGCCGGCACGCCCTGCTGGCCTGGGCCCAGGTGCAGGACAGCCTGA
TCGTCGAGGACGATTACGACGGTGAGTTCAGGTACGACACGGCCCCACTGCCCGCCCTGGCGTCCCTGAACCCTGCCCGT
GTGGTGTACCTGGGGACCTTCTCGAAGGTCCTGTCCCCGGCGCTGCGCGTGGGGTACGTCGTGGGGCCACCCGCCCTGCG
CGAGCGGCTCATTGCCCTGAAGACCATCGCGGACTACCACACGTCCTGGCCGGTCCAACGGGCGCTGACGTTCTTCCTGC
GCGTAGGTGACCTGGAGCGGCACCTGGGGCGCATGCGCCGCGTGTACGCCCGCAAGCGGGAGGTGCTGGTGCGCGAACTG
GCGGTACTCGGGTCCCTGGCGCAGGTGGGCGGCTTGGAAGCCGGGTTCCACGTGCATCTGAACCTCGACGGTCGGCTCGA
CGCAGTAGAGGTGGCCCGGCGCGCGCAGGCGCGGGGCGTGCGGGTCAACGTGCTCGCCCCGTTCTACGCTTCGGGCACGG
GACCGGGCGGGTTGGTGCTGGGCTACGGTGGGCTGGAGGCCGACCAGATCGAGCGGGGTGCCCGCGTGCTGGTCGAGGTC
ATGACCGACCTGGTCCGCCCCTGA

Upstream 100 bases:

>100_bases
CGCCGGGGTAACACCCTGGTGACCTGGTTCCGTCCTTCCCGGGTACCGGCTGGCCCGGCAGGTACTCCGCGAGCACGGCG
CGCAGATCCGGCCGGTCCCC

Downstream 100 bases:

>100_bases
TCATCACACTGGTCATCGGCTGCTCTGGACTGAGAAGCCTACACCTGACGCCTGCGGAATCCTGACCTTTGTGCGCGGCA
GCCTGTGGGTGCTGTGGCCC

Product: regulatory protein MocR, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDEDGLRVAELPVGEAAPTLVYTTPSHQFPLGSRLSLPRRHALLAWAQVQDSLIVEDDYDGEFRYDTAPLPALASLNPAR
VVYLGTFSKVLSPALRVGYVVGPPALRERLIALKTIADYHTSWPVQRALTFFLRVGDLERHLGRMRRVYARKREVLVREL
AVLGSLAQVGGLEAGFHVHLNLDGRLDAVEVARRAQARGVRVNVLAPFYASGTGPGGLVLGYGGLEADQIERGARVLVEV
MTDLVRP

Sequences:

>Translated_247_residues
MDEDGLRVAELPVGEAAPTLVYTTPSHQFPLGSRLSLPRRHALLAWAQVQDSLIVEDDYDGEFRYDTAPLPALASLNPAR
VVYLGTFSKVLSPALRVGYVVGPPALRERLIALKTIADYHTSWPVQRALTFFLRVGDLERHLGRMRRVYARKREVLVREL
AVLGSLAQVGGLEAGFHVHLNLDGRLDAVEVARRAQARGVRVNVLAPFYASGTGPGGLVLGYGGLEADQIERGARVLVEV
MTDLVRP
>Mature_247_residues
MDEDGLRVAELPVGEAAPTLVYTTPSHQFPLGSRLSLPRRHALLAWAQVQDSLIVEDDYDGEFRYDTAPLPALASLNPAR
VVYLGTFSKVLSPALRVGYVVGPPALRERLIALKTIADYHTSWPVQRALTFFLRVGDLERHLGRMRRVYARKREVLVREL
AVLGSLAQVGGLEAGFHVHLNLDGRLDAVEVARRAQARGVRVNVLAPFYASGTGPGGLVLGYGGLEADQIERGARVLVEV
MTDLVRP

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=236, Percent_Identity=25, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI33469970, Length=236, Percent_Identity=25, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI1790797, Length=198, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787710, Length=189, Percent_Identity=29.1005291005291, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27066; Mature: 27066

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEDGLRVAELPVGEAAPTLVYTTPSHQFPLGSRLSLPRRHALLAWAQVQDSLIVEDDYD
CCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCC
GEFRYDTAPLPALASLNPARVVYLGTFSKVLSPALRVGYVVGPPALRERLIALKTIADYH
CCEEECCCCCCHHHCCCCCEEEEEECHHHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHH
TSWPVQRALTFFLRVGDLERHLGRMRRVYARKREVLVRELAVLGSLAQVGGLEAGFHVHL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
NLDGRLDAVEVARRAQARGVRVNVLAPFYASGTGPGGLVLGYGGLEADQIERGARVLVEV
EECCCCHHHHHHHHHHHCCCEEEEEECEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
MTDLVRP
HHHHHCC
>Mature Secondary Structure
MDEDGLRVAELPVGEAAPTLVYTTPSHQFPLGSRLSLPRRHALLAWAQVQDSLIVEDDYD
CCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCC
GEFRYDTAPLPALASLNPARVVYLGTFSKVLSPALRVGYVVGPPALRERLIALKTIADYH
CCEEECCCCCCHHHCCCCCEEEEEECHHHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHH
TSWPVQRALTFFLRVGDLERHLGRMRRVYARKREVLVRELAVLGSLAQVGGLEAGFHVHL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
NLDGRLDAVEVARRAQARGVRVNVLAPFYASGTGPGGLVLGYGGLEADQIERGARVLVEV
EECCCCHHHHHHHHHHHCCCEEEEEECEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
MTDLVRP
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]